Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ZP4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 57829 zona pellucida glycoprotein 4 chr1 - 238053722 - 238059222 238054222 Transcription Factor Binding Sites   Download all TFBS in the ZP4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NKX2-8_homeodomain_full_monomeric_9_1 SELEX - 238057548 238057556 8.0E-06 ACACTTGAA 9 Sox1_HMG_DBD_dimeric_14_1 SELEX + 238057761 238057774 9.0E-06 TGAAGTGTAATTCA 14 SOX10_HMG_full_dimeric_14_1 SELEX + 238055479 238055492 1.0E-06 TGAATATGCTTTCA 14 POU2F1_POU_DBD_dimeric_14_1 SELEX + 238055477 238055490 2.0E-06 AATGAATATGCTTT 14 POU2F1_POU_DBD_dimeric_14_1 SELEX - 238055477 238055490 1.0E-06 AAAGCATATTCATT 14 SOX10_HMG_full_dimeric_15_3 SELEX + 238050400 238050414 6.0E-06 ACCAATTCCAGTCAG 15 Tp53_p53l_DBD_dimeric_18_1 SELEX + 238055619 238055636 5.0E-06 TCATGTGATTGCACATGT 18 Tp53_p53l_DBD_dimeric_18_1 SELEX - 238055619 238055636 4.0E-06 ACATGTGCAATCACATGA 18 PDX1_homeodomain_DBD_dimeric_18_1 SELEX + 238057712 238057729 9.0E-06 TTAATTTACTGTAAGTAC 18 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 238057712 238057729 8.0E-06 GTACTTACAGTAAATTAA 18 ZNF435_C2H2_full_dimeric_18_1 SELEX + 238050482 238050499 5.0E-06 GGTCTTAGCTGAACACCC 18 HNF1B_MA0153.1 JASPAR - 238057616 238057627 1.0E-06 TTACTGATTAAC 12 SOX8_HMG_full_dimeric_15_1 SELEX + 238057604 238057618 9.0E-06 GACCATTGTTGTGTT 15 SOX8_HMG_DBD_dimeric_14_1 SELEX + 238055479 238055492 2.0E-06 TGAATATGCTTTCA 14 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX + 238057566 238057579 6.0E-06 ATAATCAAAATTAT 14 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 238057615 238057630 8.0E-06 TAATTACTGATTAACA 16 Meis3_MEIS_DBD_dimeric_12_1 SELEX + 238050469 238050480 4.0E-06 TCACAGCTGTGA 12 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 238050469 238050480 4.0E-06 TCACAGCTGTGA 12 Ar_MA0007.1 JASPAR - 238055440 238055461 1.0E-06 CAGAGAACACTGAGTACATACA 22 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 238055406 238055416 1.0E-05 ACAAATAAAAA 11 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 238057615 238057629 2.0E-06 TGTTAATCAGTAATT 15 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 238057615 238057629 0.0E+00 AATTACTGATTAACA 15 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 238055477 238055490 3.0E-06 AATGAATATGCTTT 14 Pou2f2_POU_DBD_dimeric_14_1 SELEX - 238055477 238055490 3.0E-06 AAAGCATATTCATT 14 POU2F3_POU_DBD_dimeric_12_1 SELEX + 238055478 238055489 1.0E-06 ATGAATATGCTT 12 POU2F3_POU_DBD_dimeric_12_1 SELEX - 238055478 238055489 2.0E-06 AAGCATATTCAT 12 NFATC1_NFAT_full_dimeric_20_1 SELEX - 238055522 238055541 0.0E+00 TTTGGAAACTACATTTTCAA 20 TFEB_bHLH_full_dimeric_10_1 SELEX - 238055618 238055627 6.0E-06 ATCACATGAT 10 SOX9_HMG_full_dimeric_16_3 SELEX + 238055478 238055493 0.0E+00 ATGAATATGCTTTCAT 16 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 238055406 238055416 7.0E-06 ACAAATAAAAA 11 RFX2_RFX_DBD_dimeric_16_1 SELEX - 238051661 238051676 1.0E-05 TGCTACTATGGAAACA 16 TBX20_TBX_full_dimeric_16_1 SELEX + 238050473 238050488 9.0E-06 AGCTGTGATGGTCTTA 16 HNF1B_homeodomain_full_dimeric_13_1 SELEX + 238057616 238057628 0.0E+00 GTTAATCAGTAAT 13 HNF1B_homeodomain_full_dimeric_13_1 SELEX - 238057616 238057628 4.0E-06 ATTACTGATTAAC 13 RFX5_RFX_DBD_dimeric_16_3 SELEX + 238051661 238051676 9.0E-06 TGTTTCCATAGTAGCA 16 CART1_homeodomain_DBD_dimeric_13_1 SELEX + 238057707 238057719 1.0E-05 CAAACTTAATTTA 13 HESX1_homeodomain_DBD_dimeric_15_1 SELEX + 238057617 238057631 0.0E+00 TTAATCAGTAATTAG 15 POU5F1P1_POU_DBD_monomeric_12_1 SELEX + 238055478 238055489 1.0E-06 ATGAATATGCTT 12 POU5F1P1_POU_DBD_monomeric_12_1 SELEX - 238055478 238055489 1.0E-06 AAGCATATTCAT 12 Pou5f1_MA0142.1 JASPAR + 238055361 238055375 6.0E-06 CTTTCTTATTCAGTT 15 Pou5f1_MA0142.1 JASPAR + 238057607 238057621 5.0E-06 CATTGTTGTGTTAAT 15 TBX21_TBX_full_dimeric_19_1 SELEX - 238057601 238057619 1.0E-05 TAACACAACAATGGTCTAA 19 TFEC_bHLH_DBD_dimeric_10_1 SELEX + 238055618 238055627 8.0E-06 ATCATGTGAT 10 TFEC_bHLH_DBD_dimeric_10_1 SELEX - 238055618 238055627 2.0E-06 ATCACATGAT 10 FOXI1_forkhead_full_dimeric_17_1 SELEX - 238057713 238057729 5.0E-06 GTACTTACAGTAAATTA 17 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX - 238055406 238055415 9.0E-06 CAAATAAAAA 10 CPEB1_RRM_full_monomeric_8_1 SELEX - 238055406 238055413 4.0E-06 AATAAAAA 8 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 238057615 238057629 3.0E-06 TGTTAATCAGTAATT 15 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 238057615 238057629 0.0E+00 AATTACTGATTAACA 15 POU3F3_POU_DBD_dimeric_12_1 SELEX + 238055478 238055489 9.0E-06 ATGAATATGCTT 12 POU3F3_POU_DBD_dimeric_12_1 SELEX - 238055478 238055489 9.0E-06 AAGCATATTCAT 12 Sox2_MA0143.1 JASPAR + 238057606 238057620 1.0E-06 CCATTGTTGTGTTAA 15 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 238055609 238055619 8.0E-06 CAAGTAAATAT 11 HNF1A_MA0046.1 JASPAR - 238057616 238057629 8.0E-06 AATTACTGATTAAC 14 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 238057564 238057577 8.0E-06 CAATAATCAAAATT 14 IRX5_homeodomain_DBD_dimeric_12_1 SELEX - 238057608 238057619 6.0E-06 TAACACAACAAT 12 V_ZSCAN4_03_M02838 TRANSFAC - 238051739 238051755 9.0E-06 GCCATGTGCACCTTCAC 17 V_FOXP3_Q4_M00992 TRANSFAC + 238055649 238055665 6.0E-06 GAGGATTTGACTCATGC 17 V_TCF3_01_M01594 TRANSFAC + 238055360 238055372 2.0E-06 TCTTTCTTATTCA 13 V_MEQCJUN_02_M02048 TRANSFAC - 238055354 238055364 9.0E-06 AAAGAGGTCAT 11 V_AR_02_M00953 TRANSFAC + 238055438 238055464 1.0E-06 GATGTATGTACTCAGTGTTCTCTGAGT 27 V_OBOX1_01_M01450 TRANSFAC + 238050499 238050515 6.0E-06 CAGAAGAGATTAACTTT 17 V_SOX30_03_M02804 TRANSFAC - 238057602 238057617 6.0E-06 ACACAACAATGGTCTA 16 V_RORA1_01_M00156 TRANSFAC - 238055354 238055366 1.0E-05 AGAAAGAGGTCAT 13 V_NKX29_01_M01352 TRANSFAC - 238050366 238050382 9.0E-06 TCCTAGGTGCTCAAATT 17 V_NKX29_01_M01352 TRANSFAC - 238057719 238057735 9.0E-06 ATGTAAGTACTTACAGT 17 V_BCL6_01_M01183 TRANSFAC + 238055707 238055722 0.0E+00 TTACTAATATTGCTTT 16 V_BCL6_01_M01183 TRANSFAC - 238057572 238057587 7.0E-06 TTTGAGGGATAATTTT 16 V_POU5F1_02_M02245 TRANSFAC + 238055361 238055375 6.0E-06 CTTTCTTATTCAGTT 15 V_POU5F1_02_M02245 TRANSFAC + 238057607 238057621 5.0E-06 CATTGTTGTGTTAAT 15 V_HOXA13_02_M01297 TRANSFAC - 238055406 238055414 4.0E-06 AAATAAAAA 9 V_AR_Q6_01_M01996 TRANSFAC + 238055445 238055459 4.0E-06 GTACTCAGTGTTCTC 15 V_IRF2_Q6_M01882 TRANSFAC - 238057735 238057750 8.0E-06 TTGAAAAGGAAAACCA 16 V_NFAT3_Q3_M01734 TRANSFAC + 238055598 238055607 4.0E-06 TATTTTTCCT 10 V_GLI1_Q2_M01042 TRANSFAC + 238050492 238050501 1.0E-05 GAACACCCAG 10 V_NKX25_Q6_M02108 TRANSFAC + 238057543 238057553 8.0E-06 CCCACTTCAAG 11 V_NKX25_Q6_M02108 TRANSFAC - 238057547 238057557 1.0E-06 CACACTTGAAG 11 V_AP4_Q6_M00176 TRANSFAC + 238051623 238051632 2.0E-06 CTCAGCTGGT 10 V_POU3F2_02_M00464 TRANSFAC + 238057612 238057621 9.0E-06 TTGTGTTAAT 10 V_LHX3_01_M01471 TRANSFAC - 238057707 238057723 9.0E-06 ACAGTAAATTAAGTTTG 17 V_PSX1_01_M01435 TRANSFAC + 238055485 238055501 8.0E-06 TGCTTTCATTAGTGGCC 17 V_OCT2_02_M01761 TRANSFAC + 238055479 238055488 6.0E-06 TGAATATGCT 10 V_OCT2_02_M01761 TRANSFAC - 238055479 238055488 1.0E-05 AGCATATTCA 10 V_AR_03_M00956 TRANSFAC + 238051511 238051537 6.0E-06 TACATTGGGATCAAGTGTTCTTGGATG 27 V_AR_03_M00956 TRANSFAC + 238055438 238055464 0.0E+00 GATGTATGTACTCAGTGTTCTCTGAGT 27 V_TST1_01_M00133 TRANSFAC - 238057762 238057776 4.0E-06 TCTGAATTACACTTC 15 V_TAL1_Q6_M00993 TRANSFAC + 238057649 238057658 3.0E-06 TCCAGCTGCT 10 V_HELIOSA_02_M01004 TRANSFAC - 238055600 238055610 6.0E-06 TGAAGGAAAAA 11 V_HELIOSA_02_M01004 TRANSFAC - 238057737 238057747 2.0E-06 AAAAGGAAAAC 11 V_FOXA2_02_M02853 TRANSFAC - 238055402 238055416 1.0E-05 ACAAATAAAAAAGTC 15 V_DBX2_01_M01360 TRANSFAC + 238055470 238055485 5.0E-06 CTGAATCAATGAATAT 16 V_PR_01_M00954 TRANSFAC + 238051511 238051537 3.0E-06 TACATTGGGATCAAGTGTTCTTGGATG 27 V_PR_01_M00954 TRANSFAC + 238055438 238055464 2.0E-06 GATGTATGTACTCAGTGTTCTCTGAGT 27 V_OCT1_02_M00136 TRANSFAC - 238055475 238055489 3.0E-06 AAGCATATTCATTGA 15 V_OCT1_02_M00136 TRANSFAC + 238055478 238055492 2.0E-06 ATGAATATGCTTTCA 15 V_ZFP105_03_M02827 TRANSFAC - 238055403 238055417 4.0E-06 GACAAATAAAAAAGT 15 V_ZFP105_03_M02827 TRANSFAC + 238057565 238057579 1.0E-06 AATAATCAAAATTAT 15 V_CART1_01_M00416 TRANSFAC + 238057564 238057581 0.0E+00 CAATAATCAAAATTATCC 18 V_ARID5A_03_M02736 TRANSFAC + 238055710 238055723 0.0E+00 CTAATATTGCTTTA 14 V_GFI1_01_M00250 TRANSFAC + 238055465 238055488 2.0E-06 AAAGACTGAATCAATGAATATGCT 24 V_HNF1_Q6_M00790 TRANSFAC - 238057613 238057630 0.0E+00 TAATTACTGATTAACACA 18 V_NFAT_Q6_M00302 TRANSFAC - 238055599 238055610 8.0E-06 TGAAGGAAAAAT 12 V_HNF1B_04_M02266 TRANSFAC - 238057616 238057627 1.0E-06 TTACTGATTAAC 12 V_HNF3A_01_M01261 TRANSFAC + 238055610 238055619 5.0E-06 AAGTAAATAT 10 V_HNF1_Q6_01_M01011 TRANSFAC + 238057612 238057632 5.0E-06 TTGTGTTAATCAGTAATTAGG 21 V_HNF1_Q6_01_M01011 TRANSFAC - 238057612 238057632 3.0E-06 CCTAATTACTGATTAACACAA 21 V_EGR1_04_M02848 TRANSFAC - 238057513 238057528 4.0E-06 GTTTGAGTGGTACTTC 16 V_SOX18_03_M02801 TRANSFAC + 238057604 238057619 9.0E-06 GACCATTGTTGTGTTA 16 V_USF_02_M00122 TRANSFAC + 238055616 238055629 5.0E-06 ATATCATGTGATTG 14 V_USF_02_M00122 TRANSFAC - 238055616 238055629 5.0E-06 CAATCACATGATAT 14 V_HOX13_01_M00023 TRANSFAC + 238057562 238057591 4.0E-06 AGCAATAATCAAAATTATCCCTCAAATATG 30 V_HOX13_01_M00023 TRANSFAC - 238057612 238057641 0.0E+00 TCCTTGCTCCCTAATTACTGATTAACACAA 30 V_GR_01_M00955 TRANSFAC + 238051511 238051537 5.0E-06 TACATTGGGATCAAGTGTTCTTGGATG 27 V_GR_01_M00955 TRANSFAC + 238055438 238055464 1.0E-06 GATGTATGTACTCAGTGTTCTCTGAGT 27 V_HBP1_03_M02762 TRANSFAC + 238055471 238055486 1.0E-06 TGAATCAATGAATATG 16 V_AP4_Q5_M00175 TRANSFAC + 238051623 238051632 1.0E-06 CTCAGCTGGT 10 V_GR_Q6_M00192 TRANSFAC + 238055442 238055460 0.0E+00 TATGTACTCAGTGTTCTCT 19 V_ARID3A_04_M02735 TRANSFAC + 238057562 238057578 8.0E-06 AGCAATAATCAAAATTA 17 V_ATF1_04_M02842 TRANSFAC - 238055408 238055421 8.0E-06 CAGTGACAAATAAA 14 V_OCT4_02_M01124 TRANSFAC + 238057608 238057622 1.0E-05 ATTGTTGTGTTAATC 15 V_EMX2_01_M01461 TRANSFAC + 238055485 238055501 1.0E-05 TGCTTTCATTAGTGGCC 17 V_NKX23_01_M01457 TRANSFAC + 238057720 238057735 2.0E-06 CTGTAAGTACTTACAT 16 V_NKX23_01_M01457 TRANSFAC - 238057720 238057735 5.0E-06 ATGTAAGTACTTACAG 16 V_SOX17_04_M02904 TRANSFAC - 238055473 238055489 9.0E-06 AAGCATATTCATTGATT 17 V_HOXD9_Q2_M01834 TRANSFAC - 238055407 238055416 8.0E-06 ACAAATAAAA 10 V_MRG2_01_M01395 TRANSFAC - 238050446 238050461 5.0E-06 AAGGGGCTGTCATTTA 16 V_PKNOX2_01_M01411 TRANSFAC - 238050446 238050461 1.0E-06 AAGGGGCTGTCATTTA 16 V_HOXB8_01_M01451 TRANSFAC + 238057559 238057574 5.0E-06 AGAAGCAATAATCAAA 16 V_HNF1_01_M00132 TRANSFAC - 238057615 238057629 3.0E-06 AATTACTGATTAACA 15 V_TFEB_01_M01768 TRANSFAC + 238055618 238055627 4.0E-06 ATCATGTGAT 10 V_TFEB_01_M01768 TRANSFAC - 238055618 238055627 4.0E-06 ATCACATGAT 10 V_FOXJ3_06_M02855 TRANSFAC - 238057605 238057621 0.0E+00 ATTAACACAACAATGGT 17 V_NKX3A_02_M01383 TRANSFAC - 238057719 238057735 2.0E-06 ATGTAAGTACTTACAGT 17 V_NKX3A_02_M01383 TRANSFAC + 238057720 238057736 1.0E-06 CTGTAAGTACTTACATG 17 V_ERR1_Q2_M00511 TRANSFAC - 238055353 238055366 7.0E-06 AGAAAGAGGTCATT 14 V_BBX_03_M02739 TRANSFAC + 238055471 238055485 5.0E-06 TGAATCAATGAATAT 15 V_BBX_03_M02739 TRANSFAC - 238055471 238055485 8.0E-06 ATATTCATTGATTCA 15 V_OCT1_07_M00248 TRANSFAC + 238051601 238051612 6.0E-06 TTCATTGTAATT 12 V_SOX2_01_M02246 TRANSFAC + 238057606 238057620 1.0E-06 CCATTGTTGTGTTAA 15 V_HFH3_01_M00289 TRANSFAC - 238055609 238055621 6.0E-06 TGATATTTACTTG 13 V_TFE_Q6_M01029 TRANSFAC + 238055619 238055626 1.0E-05 TCATGTGA 8 V_PR_02_M00957 TRANSFAC + 238051511 238051537 6.0E-06 TACATTGGGATCAAGTGTTCTTGGATG 27 V_PR_02_M00957 TRANSFAC + 238055438 238055464 3.0E-06 GATGTATGTACTCAGTGTTCTCTGAGT 27 V_PIT1_Q6_M00802 TRANSFAC - 238050352 238050369 3.0E-06 AATTCCTTCTTATTCCTT 18 V_PIT1_Q6_M00802 TRANSFAC - 238057745 238057762 9.0E-06 CATTCTTGCTTGTTGAAA 18 V_SOX15_04_M02903 TRANSFAC - 238057706 238057720 6.0E-06 GTAAATTAAGTTTGA 15 V_HNF1A_01_M02162 TRANSFAC - 238057616 238057629 8.0E-06 AATTACTGATTAAC 14 V_SOX5_04_M02910 TRANSFAC + 238057708 238057722 4.0E-06 AAACTTAATTTACTG 15 V_OBOX3_02_M03065 TRANSFAC + 238050499 238050515 9.0E-06 CAGAAGAGATTAACTTT 17 V_BHLHB2_04_M02845 TRANSFAC + 238055622 238055644 2.0E-06 TGTGATTGCACATGTAAGAAAGA 23 V_OBOX3_01_M01466 TRANSFAC + 238050499 238050515 9.0E-06 CAGAAGAGATTAACTTT 17 V_SOX14_03_M02798 TRANSFAC - 238051600 238051615 8.0E-06 GGCAATTACAATGAAA 16 V_NANOG_02_M01247 TRANSFAC - 238057601 238057620 3.0E-06 TTAACACAACAATGGTCTAA 20 V_NKX21_01_M01312 TRANSFAC + 238055514 238055529 5.0E-06 TAACCCCCTTGAAAAT 16 V_OCT4_01_M01125 TRANSFAC + 238057607 238057621 3.0E-06 CATTGTTGTGTTAAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.