Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RBAK Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 57786 RB-associated KRAB zinc finger chr7 + 5080451 - 5086052 5085552 Transcription Factor Binding Sites   Download all TFBS in the RBAK promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FLI1_ETS_full_monomeric_10_1 SELEX - 5085420 5085429 7.0E-06 ACCGGAAGTC 10 ETV5_ETS_DBD_monomeric_10_1 SELEX - 5085420 5085429 7.0E-06 ACCGGAAGTC 10 ERG_ETS_full_monomeric_10_1 SELEX - 5085420 5085429 5.0E-06 ACCGGAAGTC 10 ETV3_ETS_DBD_monomeric_10_1 SELEX - 5085420 5085429 3.0E-06 ACCGGAAGTC 10 FEV_ETS_DBD_monomeric_10_1 SELEX - 5085420 5085429 6.0E-06 ACCGGAAGTC 10 ETV1_ETS_DBD_monomeric_10_1 SELEX - 5085420 5085429 7.0E-06 ACCGGAAGTC 10 IRF7_IRF_DBD_trimeric_17_1 SELEX + 5085159 5085175 8.0E-06 TATGGGAAACTCGGTTC 17 RARG_nuclearreceptor_full_dimeric_18_1 SELEX + 5085254 5085271 8.0E-06 AAGTTCAATCAGGGGTTC 18 NR4A2_nuclearreceptor_full_dimeric_17_1 SELEX + 5085517 5085533 7.0E-06 AGGTCACCGCTTGCTCT 17 NR4A2_nuclearreceptor_full_dimeric_17_1 SELEX - 5085517 5085533 4.0E-06 AGAGCAAGCGGTGACCT 17 ETS1_ETS_full_monomeric_10_1 SELEX - 5085420 5085429 9.0E-06 ACCGGAAGTC 10 ELK4_ETS_DBD_monomeric_10_1 SELEX - 5085420 5085429 5.0E-06 ACCGGAAGTC 10 znf143_MA0088.1 JASPAR - 5085356 5085375 3.0E-06 TATTTCCCATGAGCCTACGC 20 ELK4_MA0076.1 JASPAR - 5085421 5085429 4.0E-06 ACCGGAAGT 9 VENTX_homeodomain_DBD_dimeric_21_1 SELEX + 5085361 5085381 9.0E-06 GGCTCATGGGAAATAGAGTAG 21 ERF_ETS_DBD_monomeric_10_1 SELEX - 5085420 5085429 5.0E-06 ACCGGAAGTC 10 ELK1_ETS_full_monomeric_10_1 SELEX - 5085420 5085429 4.0E-06 ACCGGAAGTC 10 ZNF282_C2H2_DBD_monomeric_17_1 SELEX - 5085358 5085374 6.0E-06 ATTTCCCATGAGCCTAC 17 Elk3_ETS_DBD_monomeric_10_1 SELEX - 5085420 5085429 4.0E-06 ACCGGAAGTC 10 NRF1_NRF_full_dimeric_12_1 SELEX + 5085469 5085480 2.0E-06 CGCGCATGCGCG 12 NRF1_NRF_full_dimeric_12_1 SELEX - 5085469 5085480 2.0E-06 CGCGCATGCGCG 12 V_ERG_03_M02062 TRANSFAC - 5085420 5085429 5.0E-06 ACCGGAAGTC 10 V_ERM_01_M01992 TRANSFAC - 5085420 5085429 7.0E-06 ACCGGAAGTC 10 V_SAP1A_01_M01167 TRANSFAC - 5085420 5085430 2.0E-06 CACCGGAAGTC 11 V_FLI1_Q6_M01208 TRANSFAC - 5085418 5085428 4.0E-06 CCGGAAGTCAG 11 V_AP4_Q6_M00176 TRANSFAC - 5085397 5085406 2.0E-06 CACAGCTGGT 10 V_AP4_Q6_02_M01860 TRANSFAC + 5085398 5085410 2.0E-06 CCAGCTGTGGGCC 13 V_TCFAP2E_04_M02926 TRANSFAC - 5081881 5081894 6.0E-06 TTAAGAAAAAAATT 14 V_HBP1_Q2_M01661 TRANSFAC + 5085257 5085265 8.0E-06 TTCAATCAG 9 V_PEA3_01_M01991 TRANSFAC - 5085420 5085429 8.0E-06 ACCGGAAGTC 10 V_ELF4_04_M02850 TRANSFAC - 5081880 5081896 1.0E-06 TCTTAAGAAAAAAATTC 17 V_ELK1_06_M02059 TRANSFAC - 5085420 5085429 4.0E-06 ACCGGAAGTC 10 V_PR_Q2_M00960 TRANSFAC - 5086346 5086355 7.0E-06 GAGAGAACAG 10 V_SAP1A_02_M01983 TRANSFAC - 5085420 5085429 7.0E-06 ACCGGAAGTC 10 V_STAF_01_M00262 TRANSFAC - 5085353 5085374 9.0E-06 ATTTCCCATGAGCCTACGCGCC 22 V_RXRA_04_M02895 TRANSFAC - 5085910 5085925 8.0E-06 TCACTAAGGTTGTTCT 16 V_AP2BETA_Q3_M01858 TRANSFAC + 5085705 5085720 6.0E-06 GCTGGGGCCAGAGGGG 16 V_ERG_01_M01752 TRANSFAC - 5085421 5085429 4.0E-06 ACCGGAAGT 9 V_CETS2_01_M01989 TRANSFAC - 5085420 5085429 7.0E-06 ACCGGAAGTC 10 V_GADP_01_M01258 TRANSFAC + 5085420 5085431 5.0E-06 GACTTCCGGTGC 12 V_REST_01_M01256 TRANSFAC - 5085594 5085615 6.0E-06 CCTAGGTGCTGGCCCGGGCGCT 22 V_AP4_Q5_M00175 TRANSFAC - 5085397 5085406 6.0E-06 CACAGCTGGT 10 V_ELK1_02_M00025 TRANSFAC - 5085419 5085432 1.0E-06 TGCACCGGAAGTCA 14 V_CETS1P54_01_M00032 TRANSFAC - 5085420 5085429 5.0E-06 ACCGGAAGTC 10 V_STAT4_Q5_M02117 TRANSFAC + 5085158 5085167 4.0E-06 TTATGGGAAA 10 V_STAF_02_M00264 TRANSFAC - 5085354 5085374 1.0E-06 ATTTCCCATGAGCCTACGCGC 21 V_PEA3_02_M02066 TRANSFAC - 5085420 5085429 8.0E-06 ACCGGAAGTC 10 V_ELK1_01_M00007 TRANSFAC - 5085417 5085432 4.0E-06 TGCACCGGAAGTCAGC 16 V_ERM_02_M02069 TRANSFAC - 5085420 5085429 8.0E-06 ACCGGAAGTC 10 V_MTF1_06_M02882 TRANSFAC - 5081883 5081896 2.0E-06 TCTTAAGAAAAAAA 14 V_GABPBETA_Q3_M01876 TRANSFAC - 5085419 5085429 1.0E-05 ACCGGAAGTCA 11 V_PARP_Q3_M01211 TRANSFAC + 5085367 5085376 4.0E-06 TGGGAAATAG 10 V_ZFP206_01_M01742 TRANSFAC + 5085469 5085479 2.0E-06 CGCGCATGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 5085470 5085480 2.0E-06 CGCGCATGCGC 11 V_NRF2_01_M00108 TRANSFAC - 5085420 5085429 5.0E-06 ACCGGAAGTC 10 V_STAT1STAT1_Q3_M01212 TRANSFAC - 5085156 5085168 5.0E-06 GTTTCCCATAAAG 13 V_NRF1_Q6_M00652 TRANSFAC - 5085469 5085478 4.0E-06 CGCATGCGCG 10 V_NRF1_Q6_M00652 TRANSFAC + 5085471 5085480 4.0E-06 CGCATGCGCG 10 V_ETS1_B_M00339 TRANSFAC - 5085494 5085508 8.0E-06 ACAGGAAGCGAGGGC 15 V_SRF_02_M01257 TRANSFAC + 5085225 5085242 8.0E-06 GACCCTAAAAGGGAGTAA 18 V_CETS1_02_M02063 TRANSFAC - 5085420 5085429 8.0E-06 ACCGGAAGTC 10 V_SRF_06_M02916 TRANSFAC - 5081879 5081895 3.0E-06 CTTAAGAAAAAAATTCC 17 V_SRF_06_M02916 TRANSFAC - 5081880 5081896 3.0E-06 TCTTAAGAAAAAAATTC 17 V_NET_02_M02060 TRANSFAC - 5085420 5085429 8.0E-06 ACCGGAAGTC 10 V_STAT1_Q6_M01823 TRANSFAC + 5085158 5085167 4.0E-06 TTATGGGAAA 10 V_ETV3_02_M02068 TRANSFAC - 5085420 5085429 9.0E-06 ACCGGAAGTC 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.