Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SCUBE2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 57758 signal peptide, CUB domain, EGF-like 2 chr11 - 9112650 - 9118150 9113150 Transcription Factor Binding Sites   Download all TFBS in the SCUBE2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX21_TBX_full_dimeric_16_1 SELEX + 9111313 9111328 2.0E-06 GGTGTGTTCTGACACA 16 FOXL1_forkhead_full_dimeric_13_1 SELEX + 9114854 9114866 9.0E-06 TATAAATACATAA 13 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX + 9114872 9114880 8.0E-06 CCCATTAAA 9 V_ZFP187_03_M02830 TRANSFAC - 9114853 9114866 5.0E-06 TTATGTATTTATAT 14 V_FOXA2_04_M02749 TRANSFAC + 9114854 9114870 8.0E-06 TATAAATACATAAAGCT 17 V_CEBPE_Q6_M01868 TRANSFAC - 9112349 9112362 6.0E-06 AATACTTTCAAAAT 14 V_PR_01_M00954 TRANSFAC + 9111302 9111328 8.0E-06 TGTAGGAGGTGGGTGTGTTCTGACACA 27 V_OCT1_04_M00138 TRANSFAC + 9114845 9114867 6.0E-06 GTTAAAGCATATAAATACATAAA 23 V_MUSCLE_INI_B_M00321 TRANSFAC + 9112829 9112849 9.0E-06 TGCAGCCGCCAGCCCCGAGCC 21 V_ERBETA_Q5_M01875 TRANSFAC + 9117170 9117184 1.0E-05 GTCAAGCTGGCCCTG 15 V_FOX_Q2_M00809 TRANSFAC - 9114856 9114868 5.0E-06 CTTTATGTATTTA 13 V_FOXJ2_01_M00422 TRANSFAC + 9114849 9114866 2.0E-06 AAGCATATAAATACATAA 18 V_DTYPEPA_B_M00334 TRANSFAC + 9114872 9114881 6.0E-06 CCCATTAAAC 10 V_PAX2_02_M00486 TRANSFAC + 9114875 9114883 3.0E-06 ATTAAACTC 9

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.