Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

LRRC4C Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 57689 leucine rich repeat containing 4C chr11 - 41480686 - 41486186 41481186 Transcription Factor Binding Sites   Download all TFBS in the LRRC4C promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 41482821 41482839 1.0E-06 TTGCCAGCAGATGTCACAA 19 SOX10_HMG_full_dimeric_16_1 SELEX - 41478039 41478054 1.0E-06 AACATTCTCCAGTGTG 16 ZNF713_C2H2_full_monomeric_17_1 SELEX - 41477919 41477935 0.0E+00 AAAAAAAAAGCCAGGAA 17 ZNF713_C2H2_full_monomeric_17_1 SELEX + 41481168 41481184 1.0E-05 AAAAAGTAAGCCAAAAA 17 SOX9_HMG_full_dimeric_16_1 SELEX - 41478039 41478054 3.0E-06 AACATTCTCCAGTGTG 16 SOX8_HMG_DBD_dimeric_16_1 SELEX - 41478039 41478054 2.0E-06 AACATTCTCCAGTGTG 16 RARG_nuclearreceptor_full_dimeric_17_1 SELEX + 41482778 41482794 7.0E-06 AAGGTAGATAAAGGTGA 17 EWSR1-FLI1_MA0149.1 JASPAR + 41481209 41481226 0.0E+00 GGGAGTAGGGAAGCAAGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 41481213 41481230 5.0E-06 GTAGGGAAGCAAGGAGGT 18 GCM1_GCM_full_dimeric_16_1 SELEX - 41481386 41481401 7.0E-06 GTGTGGGTGCCTGCTT 16 POU3F3_POU_DBD_monomeric_13_1 SELEX - 41480880 41480892 1.0E-05 TATATGCTCATTT 13 Esrra_nuclearreceptor_DBD_dimeric_17_1 SELEX - 41477847 41477863 8.0E-06 GAGGTGGGTAAGGATCA 17 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX + 41481175 41481188 3.0E-06 AAGCCAAAAACTCA 14 SOX7_HMG_full_dimeric_16_1 SELEX - 41478039 41478054 6.0E-06 AACATTCTCCAGTGTG 16 SPDEF_ETS_full_putative-multimer_16_1 SELEX - 41477897 41477912 4.0E-06 CTAGTAAGAAGTTTAA 16 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 41482836 41482848 9.0E-06 ACAAAAGAAAACA 13 V_MEQ_01_M02049 TRANSFAC + 41481407 41481415 7.0E-06 AACACACAC 9 V_FOXP1_01_M00987 TRANSFAC - 41481398 41481417 0.0E+00 TTGTGTGTGTTTGTGAGTGT 20 V_FOXP1_01_M00987 TRANSFAC - 41482836 41482855 0.0E+00 TTACCTGTGTTTTCTTTTGT 20 V_AREB6_01_M00412 TRANSFAC - 41482846 41482858 0.0E+00 ATTTTACCTGTGT 13 V_TGIF_01_M00418 TRANSFAC + 41481450 41481460 7.0E-06 AACTGTCAGTA 11 V_MEIS1_02_M01419 TRANSFAC + 41477959 41477974 4.0E-06 TTCCAGCTGTCAACCC 16 V_FOXP3_Q4_M00992 TRANSFAC - 41481173 41481189 1.0E-05 ATGAGTTTTTGGCTTAC 17 V_PREP1_01_M01459 TRANSFAC + 41477959 41477974 3.0E-06 TTCCAGCTGTCAACCC 16 V_LEF1_04_M02774 TRANSFAC - 41481183 41481199 4.0E-06 TTTGCCTTTGATGAGTT 17 V_BCL6_Q3_01_M02085 TRANSFAC + 41482863 41482872 7.0E-06 CTTCCAAGAA 10 V_FXR_Q3_M00631 TRANSFAC - 41477835 41477848 3.0E-06 CAGGTGGATTGAAC 14 V_SMAD3_Q6_01_M01888 TRANSFAC - 41481740 41481752 2.0E-06 GGACAGACACAGC 13 V_XPF1_Q6_M00684 TRANSFAC - 41480854 41480863 1.0E-06 TCAGAAGAAC 10 V_BCL6_01_M01183 TRANSFAC - 41482854 41482869 9.0E-06 TTGGAAGAATTATTTT 16 V_MMEF2_Q6_M00405 TRANSFAC + 41480872 41480887 2.0E-06 ATCTCTAAAAATGAGC 16 V_TCF4_Q5_01_M02033 TRANSFAC + 41481188 41481197 9.0E-06 ATCAAAGGCA 10 V_GCNF_Q3_M02009 TRANSFAC + 41477832 41477841 7.0E-06 CAAGTTCAAT 10 V_NKX25_Q6_M02108 TRANSFAC - 41481785 41481795 3.0E-06 CTCACTTGCAG 11 V_OCT_C_M00210 TRANSFAC - 41481379 41481391 6.0E-06 CTGCTTTGCATGA 13 V_COUPTF_Q6_M01036 TRANSFAC + 41477842 41477864 2.0E-06 CCACCTGATCCTTACCCACCTCC 23 V_AIRE_02_M01000 TRANSFAC + 41477901 41477925 3.0E-06 ACTTCTTACTAGGTGATGTTCCTGG 25 V_TCFAP2E_04_M02926 TRANSFAC - 41477926 41477939 7.0E-06 TTAAAAAAAAAAAG 14 V_TCFAP2E_04_M02926 TRANSFAC - 41477927 41477940 4.0E-06 TTTAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 41477930 41477943 4.0E-06 ACCTTTAAAAAAAA 14 V_LDSPOLYA_B_M00317 TRANSFAC - 41482839 41482854 0.0E+00 TACCTGTGTTTTCTTT 16 V_NKX62_Q2_M00489 TRANSFAC + 41482854 41482865 8.0E-06 AAAATAATTCTT 12 V_TAL1_GATA1_01_M02243 TRANSFAC + 41482772 41482789 4.0E-06 TTGGAGAAGGTAGATAAA 18 V_LXRB_RXRA_Q5_M02021 TRANSFAC - 41481455 41481469 3.0E-06 GGAGGTTACTACTGA 15 V_TGIF2_01_M01407 TRANSFAC + 41477959 41477974 2.0E-06 TTCCAGCTGTCAACCC 16 V_ELF4_04_M02850 TRANSFAC - 41477924 41477940 1.0E-06 TTTAAAAAAAAAAAGCC 17 V_ELF4_04_M02850 TRANSFAC - 41477925 41477941 0.0E+00 CTTTAAAAAAAAAAAGC 17 V_TCF3_04_M02816 TRANSFAC + 41481183 41481199 2.0E-06 AACTCATCAAAGGCAAA 17 V_MEIS2_01_M01488 TRANSFAC + 41477959 41477974 5.0E-06 TTCCAGCTGTCAACCC 16 V_ZFP105_03_M02827 TRANSFAC - 41477926 41477940 0.0E+00 TTTAAAAAAAAAAAG 15 V_ZFP105_03_M02827 TRANSFAC - 41477927 41477941 9.0E-06 CTTTAAAAAAAAAAA 15 V_HNF3G_Q4_M02015 TRANSFAC + 41477975 41477982 7.0E-06 TGTTTGTT 8 V_CART1_01_M00416 TRANSFAC - 41481808 41481825 7.0E-06 ACCTTATTAGTATTCTTG 18 V_TATA_C_M00216 TRANSFAC - 41477933 41477942 6.0E-06 CCTTTAAAAA 10 V_HOX13_01_M00023 TRANSFAC - 41481804 41481833 2.0E-06 AGCTAACCACCTTATTAGTATTCTTGCCTC 30 Tal1_Gata1_MA0140.1 JASPAR + 41482772 41482789 4.0E-06 TTGGAGAAGGTAGATAAA 18 V_TCF7_03_M02817 TRANSFAC + 41481183 41481199 3.0E-06 AACTCATCAAAGGCAAA 17 V_TCF7_03_M02817 TRANSFAC - 41481371 41481387 8.0E-06 TTTGCATGAAAGAGAAT 17 V_RREB1_01_M00257 TRANSFAC + 41481408 41481421 1.0E-05 ACACACACAAACAC 14 V_CTCF_02_M01259 TRANSFAC + 41482818 41482837 0.0E+00 GTATTGCCAGCAGATGTCAC 20 V_CTCF_01_M01200 TRANSFAC + 41482820 41482839 2.0E-06 ATTGCCAGCAGATGTCACAA 20 V_SOX17_04_M02904 TRANSFAC + 41481371 41481387 3.0E-06 ATTCTCTTTCATGCAAA 17 V_GATA4_Q3_M00632 TRANSFAC + 41482783 41482794 4.0E-06 AGATAAAGGTGA 12 V_GCNF_01_M00526 TRANSFAC + 41477824 41477841 7.0E-06 CAAAATTTCAAGTTCAAT 18 V_MTF1_06_M02882 TRANSFAC - 41477928 41477941 5.0E-06 CTTTAAAAAAAAAA 14 V_AP4_01_M00005 TRANSFAC - 41481731 41481748 1.0E-06 AGACACAGCTCTGGCAAT 18 V_MRG2_01_M01395 TRANSFAC + 41477959 41477974 6.0E-06 TTCCAGCTGTCAACCC 16 V_AREB6_02_M00413 TRANSFAC - 41482785 41482796 7.0E-06 ACTCACCTTTAT 12 V_PLZF_02_M01075 TRANSFAC + 41482774 41482802 8.0E-06 GGAGAAGGTAGATAAAGGTGAGTTATAGT 29 V_SRF_06_M02916 TRANSFAC - 41477923 41477939 1.0E-06 TTAAAAAAAAAAAGCCA 17 V_SRF_06_M02916 TRANSFAC - 41477924 41477940 0.0E+00 TTTAAAAAAAAAAAGCC 17 V_SRF_06_M02916 TRANSFAC - 41477925 41477941 0.0E+00 CTTTAAAAAAAAAAAGC 17 V_SRF_06_M02916 TRANSFAC - 41477926 41477942 1.0E-06 CCTTTAAAAAAAAAAAG 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 41481209 41481226 0.0E+00 GGGAGTAGGGAAGCAAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 41481213 41481230 5.0E-06 GTAGGGAAGCAAGGAGGT 18 V_SMAD3_Q6_M00701 TRANSFAC + 41478064 41478072 6.0E-06 TGTCTGACT 9 V_MEF2_01_M00006 TRANSFAC + 41480874 41480889 6.0E-06 CTCTAAAAATGAGCAT 16 V_HMEF2_Q6_M00406 TRANSFAC + 41480874 41480889 8.0E-06 CTCTAAAAATGAGCAT 16 V_PBX1_04_M01357 TRANSFAC + 41477816 41477832 8.0E-06 TCAGCAATCAAAATTTC 17 V_DMRT5_01_M01150 TRANSFAC + 41481827 41481841 3.0E-06 GTTAGCTACAGTTTC 15 V_NANOG_02_M01247 TRANSFAC - 41477920 41477939 6.0E-06 TTAAAAAAAAAAAGCCAGGA 20 V_TCF4_01_M01705 TRANSFAC - 41481187 41481195 5.0E-06 CCTTTGATG 9

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.