Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

EP400 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 57634 E1A binding protein p400 chr12 + 132429464 - 132434964 132434464 Transcription Factor Binding Sites   Download all TFBS in the EP400 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 132435739 132435749 6.0E-06 CATGAGTCACC 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 132435739 132435749 8.0E-06 GGTGACTCATG 11 SP8_C2H2_DBD_monomeric_12_1 SELEX - 132434861 132434872 3.0E-06 GCCACGCCCCCA 12 HINFP1_C2H2_full_dimeric_19_1 SELEX - 132434666 132434684 9.0E-06 GCGGGCCCTGTACGCCCGC 19 SP3_C2H2_DBD_monomeric_11_1 SELEX - 132434862 132434872 3.0E-06 GCCACGCCCCC 11 HOXA10_homeodomain_DBD_monomeric_12_1 SELEX - 132432856 132432867 3.0E-06 TGTCATAAAATG 12 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 132434213 132434223 1.0E-05 GCCCCGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 132434862 132434872 1.0E-06 GCCACGCCCCC 11 SRY_HMG_DBD_dimeric_13_2 SELEX + 132433535 132433547 1.0E-05 AGAATCTCATTCT 13 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 132434860 132434873 5.0E-06 GGCCACGCCCCCAG 14 HOXC11_homeodomain_full_monomeric_11_1 SELEX - 132432857 132432867 6.0E-06 TGTCATAAAAT 11 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX - 132432858 132432867 6.0E-06 TGTCATAAAA 10 HOXC11_homeodomain_full_monomeric_11_2 SELEX - 132432857 132432867 8.0E-06 TGTCATAAAAT 11 SP1_MA0079.2 JASPAR + 132434214 132434223 7.0E-06 CCCCGCCCCC 10 SP4_C2H2_full_monomeric_17_1 SELEX - 132434859 132434875 4.0E-06 TCGGCCACGCCCCCAGC 17 HOXC11_homeodomain_DBD_monomeric_11_1 SELEX - 132432857 132432867 2.0E-06 TGTCATAAAAT 11 SP1_C2H2_DBD_monomeric_11_1 SELEX - 132434862 132434872 5.0E-06 GCCACGCCCCC 11 TBX20_TBX_full_dimeric_16_1 SELEX + 132433409 132433424 6.0E-06 AAGTTTTAAATTGTGA 16 HESX1_homeodomain_DBD_dimeric_15_1 SELEX + 132435297 132435311 0.0E+00 TTTATTAGTAATTAC 15 Klf12_C2H2_DBD_monomeric_15_1 SELEX - 132434859 132434873 1.0E-05 GGCCACGCCCCCAGC 15 IRF9_IRF_full_trimeric_15_1 SELEX - 132433451 132433465 9.0E-06 ACTGAAAACGCAACT 15 FEV_MA0156.1 JASPAR + 132432246 132432253 1.0E-05 CAGGAAAT 8 JDP2_bZIP_full_dimeric_9_1 SELEX + 132435740 132435748 1.0E-05 ATGAGTCAC 9 Pou5f1_MA0142.1 JASPAR - 132433396 132433410 2.0E-06 TTTTGTGCTGCAAAT 15 IRF4_IRF_full_dimeric_15_1 SELEX - 132433450 132433464 1.0E-05 CTGAAAACGCAACTA 15 Nr2f6_nuclearreceptor_DBD_dimeric_15_1 SELEX - 132435690 132435704 5.0E-06 CGGATCACGAGGTCA 15 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX - 132432857 132432867 5.0E-06 TGTCATAAAAT 11 Sox2_MA0143.1 JASPAR - 132433397 132433411 0.0E+00 CTTTTGTGCTGCAAA 15 BHLHB3_bHLH_full_dimeric_10_1 SELEX + 132429579 132429588 6.0E-06 CGCACGTGAC 10 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX - 132432857 132432867 4.0E-06 TGTCATAAAAT 11 V_HOXA9_01_M01351 TRANSFAC - 132432853 132432869 0.0E+00 AATGTCATAAAATGAGA 17 V_FOXP1_01_M00987 TRANSFAC + 132435762 132435781 1.0E-06 TTTTTTGTGTGTTTTAGTAG 20 RXR_RAR_DR5_MA0159.1 JASPAR - 132432863 132432879 6.0E-06 GGTTGATAAAAATGTCA 17 V_AP1_Q2_M00173 TRANSFAC - 132432129 132432139 7.0E-06 ACTGACTTAGA 11 V_DEC2_Q2_M01843 TRANSFAC - 132429580 132429589 9.0E-06 GGTCACGTGC 10 V_BACH2_01_M00490 TRANSFAC + 132435739 132435749 2.0E-06 CATGAGTCACC 11 V_ZFX_01_M01593 TRANSFAC + 132434714 132434729 2.0E-06 GACCAGGCCGTGGCGG 16 V_ZEC_01_M01081 TRANSFAC + 132433444 132433456 8.0E-06 GTTTGTTAGTTGC 13 V_POU5F1_02_M02245 TRANSFAC - 132433396 132433410 2.0E-06 TTTTGTGCTGCAAAT 15 V_IK_Q5_M01169 TRANSFAC - 132435713 132435722 3.0E-06 TTTGGGAGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 132434213 132434222 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 132434240 132434249 4.0E-06 GGGGCGGGGC 10 V_CEBP_01_M00159 TRANSFAC + 132434101 132434113 6.0E-06 TGTTTGGTGAATC 13 V_SP1_03_M02281 TRANSFAC + 132434214 132434223 7.0E-06 CCCCGCCCCC 10 V_LYF1_01_M00141 TRANSFAC - 132435714 132435722 9.0E-06 TTTGGGAGG 9 V_HOXA13_03_M01430 TRANSFAC - 132432855 132432870 5.0E-06 AAATGTCATAAAATGA 16 V_DLX5_01_M01388 TRANSFAC + 132435185 132435200 5.0E-06 TTAGTAATTGCCGCTG 16 V_HOXC13_01_M01317 TRANSFAC - 132432855 132432870 1.0E-06 AAATGTCATAAAATGA 16 V_LXRB_RXRA_Q5_M02021 TRANSFAC - 132435683 132435697 6.0E-06 CGAGGTCAGGAGTTC 15 V_WT1_Q6_01_M02036 TRANSFAC + 132434217 132434226 4.0E-06 CGCCCCCGCC 10 V_RPC155_01_M01798 TRANSFAC + 132434041 132434056 1.0E-06 CCAGGAGTTCGAGGCC 16 V_RPC155_01_M01798 TRANSFAC - 132435677 132435692 0.0E+00 TCAGGAGTTCCAGACC 16 V_BACH1_01_M00495 TRANSFAC + 132435737 132435751 8.0E-06 GGCATGAGTCACCGC 15 V_FOXA2_02_M02853 TRANSFAC - 132433442 132433456 3.0E-06 GCAACTAACAAACAT 15 V_FKLF_Q5_M01837 TRANSFAC - 132434334 132434343 5.0E-06 GGGGTGGGCG 10 V_SP4_03_M02810 TRANSFAC + 132435698 132435714 3.0E-06 TGATCCGCCCCCTTGGC 17 V_KROX_Q6_M00982 TRANSFAC - 132434602 132434615 1.0E-06 CCCGCCCCCGTCCC 14 V_HOXD12_01_M01380 TRANSFAC - 132432854 132432870 3.0E-06 AAATGTCATAAAATGAG 17 V_HOXB9_01_M01426 TRANSFAC - 132432854 132432869 9.0E-06 AATGTCATAAAATGAG 16 V_SP1_Q6_M00196 TRANSFAC - 132434212 132434224 1.0E-06 CGGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 132434239 132434251 4.0E-06 GCGGGGCGGGGCC 13 V_CDX2_01_M01449 TRANSFAC - 132432855 132432870 1.0E-06 AAATGTCATAAAATGA 16 V_EGR1_Q6_M01873 TRANSFAC - 132434216 132434225 4.0E-06 GCGGGGGCGG 10 V_CDX2_Q5_M00729 TRANSFAC + 132432854 132432867 8.0E-06 CTCATTTTATGACA 14 V_HOXC11_01_M01329 TRANSFAC - 132432855 132432870 0.0E+00 AAATGTCATAAAATGA 16 V_HNF1_Q6_01_M01011 TRANSFAC - 132435292 132435312 2.0E-06 AGTAATTACTAATAAAGCACT 21 V_HOXD11_01_M01434 TRANSFAC - 132432854 132432870 2.0E-06 AAATGTCATAAAATGAG 17 V_JUNDM2_04_M02876 TRANSFAC + 132435736 132435751 6.0E-06 AGGCATGAGTCACCGC 16 V_HOX13_01_M00023 TRANSFAC + 132435287 132435316 1.0E-06 ATCCCAGTGCTTTATTAGTAATTACTTTCT 30 V_CDX1_01_M01373 TRANSFAC - 132432855 132432870 0.0E+00 AAATGTCATAAAATGA 16 V_HOXC12_01_M01437 TRANSFAC - 132432854 132432870 6.0E-06 AAATGTCATAAAATGAG 17 V_SOX12_04_M02900 TRANSFAC - 132435760 132435775 3.0E-06 AAACACACAAAAAACT 16 V_PAX8_01_M00717 TRANSFAC - 132435061 132435075 5.0E-06 AAGTTCTGAGTGAAT 15 V_KLF7_03_M02773 TRANSFAC - 132434860 132434875 4.0E-06 TCGGCCACGCCCCCAG 16 V_PAX3_01_M00360 TRANSFAC + 132435219 132435231 7.0E-06 TCGTCACACACCT 13 V_ISGF3G_03_M02771 TRANSFAC - 132433449 132433463 4.0E-06 TGAAAACGCAACTAA 15 V_HOXA11_01_M01378 TRANSFAC - 132432855 132432870 0.0E+00 AAATGTCATAAAATGA 16 V_OCT4_02_M01124 TRANSFAC - 132433395 132433409 3.0E-06 TTTGTGCTGCAAATG 15 V_SP4_Q5_M01273 TRANSFAC + 132434213 132434223 1.0E-06 GCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC + 132434240 132434250 2.0E-06 GCCCCGCCCCG 11 V_HOXB8_01_M01451 TRANSFAC - 132435184 132435199 7.0E-06 AGCGGCAATTACTAAG 16 V_ZSCAN4_04_M02942 TRANSFAC - 132435762 132435777 3.0E-06 TAAAACACACAAAAAA 16 V_NANOG_01_M01123 TRANSFAC + 132433477 132433488 3.0E-06 GAAACCATTTCC 12 V_TCF7_04_M02921 TRANSFAC + 132435296 132435310 1.0E-06 CTTTATTAGTAATTA 15 V_VDR_Q6_M00961 TRANSFAC + 132433932 132433943 9.0E-06 CTTGGTGAACCA 12 V_FOX_Q2_M00809 TRANSFAC + 132435764 132435776 4.0E-06 TTTTGTGTGTTTT 13 V_OCT1_06_M00162 TRANSFAC - 132433535 132433548 7.0E-06 CAGAATGAGATTCT 14 V_EGR1_06_M02744 TRANSFAC + 132434215 132434228 4.0E-06 CCCGCCCCCGCCTT 14 V_RXR_RAR_01_M02272 TRANSFAC - 132432863 132432879 6.0E-06 GGTTGATAAAAATGTCA 17 V_LXRA_RXRA_Q3_M00647 TRANSFAC - 132435685 132435699 8.0E-06 CACGAGGTCAGGAGT 15 V_SOX2_01_M02246 TRANSFAC - 132433397 132433411 0.0E+00 CTTTTGTGCTGCAAA 15 V_SOX2_Q6_M01272 TRANSFAC - 132433400 132433415 1.0E-05 AAAACTTTTGTGCTGC 16 V_HOXC10_01_M01361 TRANSFAC - 132432855 132432870 0.0E+00 AAATGTCATAAAATGA 16 V_SP1_Q2_01_M00933 TRANSFAC + 132434214 132434223 4.0E-06 CCCCGCCCCC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC - 132434213 132434226 2.0E-06 GGCGGGGGCGGGGC 14 V_HOXA10_01_M01464 TRANSFAC - 132432854 132432869 2.0E-06 AATGTCATAAAATGAG 16 V_SP1_Q4_01_M00932 TRANSFAC - 132434212 132434224 1.0E-06 CGGGGGCGGGGCC 13 V_SP1_Q4_01_M00932 TRANSFAC - 132434239 132434251 6.0E-06 GCGGGGCGGGGCC 13 V_HOXD10_01_M01375 TRANSFAC - 132432853 132432869 0.0E+00 AATGTCATAAAATGAGA 17 V_FEV_01_M02269 TRANSFAC + 132432246 132432253 1.0E-05 CAGGAAAT 8 V_BRCA_01_M01082 TRANSFAC + 132433544 132433551 1.0E-05 TTCTGTTG 8 V_GLIS2_04_M02863 TRANSFAC - 132435295 132435308 2.0E-06 ATTACTAATAAAGC 14 V_GLIS2_04_M02863 TRANSFAC + 132435297 132435310 8.0E-06 TTTATTAGTAATTA 14 V_CEBPG_Q6_01_M01869 TRANSFAC - 132433482 132433493 2.0E-06 GGTTAGGAAATG 12 V_NANOG_02_M01247 TRANSFAC + 132433397 132433416 9.0E-06 TTTGCAGCACAAAAGTTTTA 20 V_HOXC9_01_M01416 TRANSFAC - 132432855 132432870 4.0E-06 AAATGTCATAAAATGA 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.