Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CRAMP1L Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 57585 Crm, cramped-like (Drosophila) chr16 + 1659640 - 1665140 1664640 Transcription Factor Binding Sites   Download all TFBS in the CRAMP1L promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 1660315 1660327 6.0E-06 CAAAACAAAAACA 13 TBX1_TBX_DBD_dimeric_20_2 SELEX - 1659959 1659978 7.0E-06 TGGACGCCTGAAAGTGAGAG 20 SPIC_ETS_full_monomeric_14_1 SELEX + 1661823 1661836 5.0E-06 AAAAAAAGAAAGAA 14 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 1662337 1662347 1.0E-05 GCCCCGCCCCC 11 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 1661507 1661523 9.0E-06 GAAAAGAAAAAGAAACA 17 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 1661344 1661358 6.0E-06 AAATTACAAAAATTA 15 STAT1_MA0137.2 JASPAR - 1661097 1661111 3.0E-06 ACTTTCCCAGAAACG 15 NFYA_MA0060.1 JASPAR + 1662235 1662250 5.0E-06 GCTAGCCAATGGGAGC 16 ELF3_ETS_full_monomeric_13_1 SELEX + 1660717 1660729 5.0E-06 AACGCGGAAATAG 13 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 1663915 1663928 1.0E-06 ATAAAGAATAATCA 14 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX + 1661351 1661360 9.0E-06 AAAAATTAGC 10 SP1_MA0079.2 JASPAR + 1662338 1662347 7.0E-06 CCCCGCCCCC 10 IRF9_IRF_full_trimeric_15_1 SELEX + 1661509 1661523 8.0E-06 AAAGAAAAAGAAACA 15 Hltf_MA0109.1 JASPAR - 1666082 1666091 1.0E-06 ATACTTATAT 10 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 1661343 1661359 6.0E-06 AAAATTACAAAAATTAG 17 EHF_ETS_full_monomeric_12_1 SELEX + 1660717 1660728 3.0E-06 AACGCGGAAATA 12 TBX21_TBX_full_dimeric_19_1 SELEX - 1660346 1660364 6.0E-06 TCACACCCCCGAGGCGAAA 19 ELF1_ETS_full_monomeric_12_1 SELEX + 1660717 1660728 8.0E-06 AACGCGGAAATA 12 Tp53_p53l_DBD_dimeric_17_1 SELEX + 1659833 1659849 4.0E-06 TCAGGTCGGAAACAAGT 17 ELF3_ETS_DBD_monomeric_12_1 SELEX + 1660717 1660728 4.0E-06 AACGCGGAAATA 12 IRF3_IRF_full_trimeric_21_1 SELEX + 1661504 1661524 5.0E-06 AAAGAAAAGAAAAAGAAACAC 21 ELF5_MA0136.1 JASPAR - 1665936 1665944 2.0E-06 TATTTCCTT 9 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 1660315 1660327 1.0E-06 CAAAACAAAAACA 13 TP63_p53l_DBD_dimeric_18_1 SELEX + 1665588 1665605 9.0E-06 AACAAGCAGCAGCTTGTA 18 V_ELF5_02_M01980 TRANSFAC + 1660719 1660728 7.0E-06 CGCGGAAATA 10 V_RUSH1A_02_M01107 TRANSFAC - 1666082 1666091 1.0E-06 ATACTTATAT 10 V_ELF5_03_M02057 TRANSFAC + 1660719 1660728 2.0E-06 CGCGGAAATA 10 V_MYB_Q6_M00183 TRANSFAC + 1661963 1661972 9.0E-06 CTTAACTGCC 10 V_MEQ_01_M02049 TRANSFAC - 1663927 1663935 2.0E-06 AACACACAT 9 V_FOXP1_01_M00987 TRANSFAC - 1661501 1661520 0.0E+00 TTCTTTTTCTTTTCTTTTTT 20 V_FOXP1_01_M00987 TRANSFAC - 1661817 1661836 0.0E+00 TTCTTTCTTTTTTTTTTTTT 20 V_FOXP1_01_M00987 TRANSFAC - 1661821 1661840 4.0E-06 TTCTTTCTTTCTTTTTTTTT 20 V_FOXP1_01_M00987 TRANSFAC + 1663921 1663940 8.0E-06 TTCTTTATGTGTGTTTTAAA 20 V_NFKB_C_M00208 TRANSFAC + 1660400 1660411 4.0E-06 AGGGACTCTCCC 12 V_STAT5A_Q6_M01890 TRANSFAC + 1661096 1661108 6.0E-06 GCGTTTCTGGGAA 13 V_STAT5A_Q6_M01890 TRANSFAC + 1661987 1661999 3.0E-06 ACACTTCTCAGAA 13 V_TEL1_02_M02070 TRANSFAC + 1660719 1660728 8.0E-06 CGCGGAAATA 10 V_DBX1_01_M01483 TRANSFAC + 1661340 1661356 2.0E-06 TAAAAAATTACAAAAAT 17 V_ZFP187_03_M02830 TRANSFAC + 1661645 1661658 1.0E-06 GTATGTACTAAAAA 14 V_TCF3_01_M01594 TRANSFAC + 1660317 1660329 1.0E-06 TTTTTGTTTTGCA 13 V_TCF3_01_M01594 TRANSFAC - 1661343 1661355 3.0E-06 TTTTTGTAATTTT 13 V_TCF3_01_M01594 TRANSFAC + 1665519 1665531 7.0E-06 CCTTTGAGTTGCA 13 V_BCL6_Q3_01_M02085 TRANSFAC + 1660880 1660889 5.0E-06 TTTTCTAGGA 10 V_SMAD3_Q6_01_M01888 TRANSFAC - 1662103 1662115 9.0E-06 GGACAGACAGCCA 13 V_CEBP_Q3_M00770 TRANSFAC - 1661346 1661357 3.0E-06 AATTTTTGTAAT 12 V_ACAAT_B_M00309 TRANSFAC - 1662114 1662122 8.0E-06 GATTGGTGG 9 V_HMGIY_Q3_M01010 TRANSFAC - 1661339 1661353 3.0E-06 TTTGTAATTTTTTAG 15 V_EVI1_04_M00081 TRANSFAC + 1661507 1661521 8.0E-06 GAAAAGAAAAAGAAA 15 V_BCL6_01_M01183 TRANSFAC - 1661341 1661356 0.0E+00 ATTTTTGTAATTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 1661822 1661837 3.0E-06 TTTCTTTCTTTTTTTT 16 V_ESE1_01_M01977 TRANSFAC + 1660719 1660728 6.0E-06 CGCGGAAATA 10 V_MAFB_03_M02879 TRANSFAC + 1661344 1661358 2.0E-06 AAATTACAAAAATTA 15 V_SP1_Q6_01_M00931 TRANSFAC - 1662309 1662318 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 1662337 1662346 4.0E-06 GGGGCGGGGC 10 V_IRF_Q6_01_M00972 TRANSFAC + 1661512 1661522 6.0E-06 GAAAAAGAAAC 11 V_IRF2_Q6_M01882 TRANSFAC + 1661822 1661837 1.0E-06 AAAAAAAAGAAAGAAA 16 V_P50P50_Q3_M01223 TRANSFAC + 1660399 1660411 3.0E-06 AAGGGACTCTCCC 13 V_SP1_03_M02281 TRANSFAC + 1662338 1662347 7.0E-06 CCCCGCCCCC 10 V_PITX2_Q6_M02114 TRANSFAC + 1661691 1661700 9.0E-06 TGTAATTCCA 10 V_SP1_02_M01303 TRANSFAC - 1660378 1660388 5.0E-06 GGGGTGGGGAG 11 V_PU1_Q4_M01172 TRANSFAC - 1661500 1661518 3.0E-06 CTTTTTCTTTTCTTTTTTT 19 V_GM497_04_M02864 TRANSFAC + 1661931 1661946 6.0E-06 AGAAGCACATACTCCA 16 V_SOX21_03_M02803 TRANSFAC + 1661342 1661357 9.0E-06 AAAAATTACAAAAATT 16 V_SOX21_03_M02803 TRANSFAC - 1661342 1661357 8.0E-06 AATTTTTGTAATTTTT 16 V_BRN2_01_M00145 TRANSFAC + 1666062 1666077 6.0E-06 CTCATTGGTAAAGAAT 16 V_MEF2A_Q6_M02024 TRANSFAC - 1663934 1663943 2.0E-06 TATTTTAAAA 10 V_WT1_Q6_01_M02036 TRANSFAC - 1660443 1660452 4.0E-06 CGCCCCCGCC 10 V_NFY_C_M00209 TRANSFAC - 1662071 1662084 3.0E-06 TGTGATTGGCCGCA 14 V_ELF4_04_M02850 TRANSFAC + 1661336 1661352 3.0E-06 TCTCTAAAAAATTACAA 17 V_GC_01_M00255 TRANSFAC - 1660382 1660395 9.0E-06 AATGGGCGGGGTGG 14 V_GC_01_M00255 TRANSFAC - 1662335 1662348 8.0E-06 CGGGGGCGGGGCCG 14 V_FOXA2_02_M02853 TRANSFAC + 1661342 1661356 2.0E-06 AAAAATTACAAAAAT 15 V_HNF3G_Q4_M02015 TRANSFAC - 1664544 1664551 7.0E-06 TGTTTGTT 8 V_NKX61_01_M00424 TRANSFAC - 1661341 1661353 4.0E-06 TTTGTAATTTTTT 13 V_ZBED6_01_M01598 TRANSFAC - 1663992 1664003 1.0E-06 CGGGCTCGCCTG 12 V_KROX_Q6_M00982 TRANSFAC + 1662339 1662352 9.0E-06 CCCGCCCCCGCGCG 14 V_NFKB_Q6_M00194 TRANSFAC + 1660399 1660412 7.0E-06 AAGGGACTCTCCCA 14 V_TBX5_02_M01020 TRANSFAC + 1661132 1661141 6.0E-06 TGAGGTGTTG 10 V_SP1_Q6_M00196 TRANSFAC - 1662308 1662320 7.0E-06 GCGGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC - 1662336 1662348 1.0E-06 CGGGGGCGGGGCC 13 V_AP2BETA_Q3_M01858 TRANSFAC + 1660517 1660532 6.0E-06 GCGAGGGGCCGCGGGG 16 V_AP2BETA_Q3_M01858 TRANSFAC + 1662466 1662481 9.0E-06 GCGCCGGCCCGCGGAG 16 V_EGR1_Q6_M01873 TRANSFAC - 1662340 1662349 4.0E-06 GCGGGGGCGG 10 V_IRF_Q6_M00772 TRANSFAC - 1661506 1661520 3.0E-06 TTCTTTTTCTTTTCT 15 V_IRF_Q6_M00772 TRANSFAC - 1661512 1661526 9.0E-06 CAGTGTTTCTTTTTC 15 V_IRF_Q6_M00772 TRANSFAC - 1661824 1661838 2.0E-06 CTTTCTTTCTTTTTT 15 V_PAX5_01_M00143 TRANSFAC - 1662407 1662434 3.0E-06 CCGCCACTCACCCTAGCGAAGCCGGCCC 28 V_BCL6_Q3_M01171 TRANSFAC + 1660880 1660889 5.0E-06 TTTTCTAGGA 10 V_EHF_02_M01974 TRANSFAC + 1660719 1660728 5.0E-06 CGCGGAAATA 10 V_ELF5_01_M01197 TRANSFAC + 1665934 1665944 2.0E-06 ACAAGGAAATA 11 V_OCT1_04_M00138 TRANSFAC + 1666082 1666104 0.0E+00 ATATAAGTATACTTATTTAAAGA 23 V_SOX12_04_M02900 TRANSFAC - 1663919 1663934 1.0E-06 ACACACATAAAGAATA 16 V_MEF2_04_M00233 TRANSFAC + 1660296 1660317 8.0E-06 CGAGTGACCAAACATAGCATGT 22 V_MEF2_Q6_01_M00941 TRANSFAC - 1663935 1663946 4.0E-06 GCTTATTTTAAA 12 V_CDC5_01_M00478 TRANSFAC + 1663933 1663944 1.0E-06 GTTTTAAAATAA 12 V_NKX3A_01_M00451 TRANSFAC + 1666082 1666093 1.0E-06 ATATAAGTATAC 12 V_NCX_02_M01420 TRANSFAC + 1661340 1661356 4.0E-06 TAAAAAATTACAAAAAT 17 V_STAT4_Q5_M02117 TRANSFAC + 1661100 1661109 7.0E-06 TTCTGGGAAA 10 V_TEL1_01_M01993 TRANSFAC + 1660719 1660728 8.0E-06 CGCGGAAATA 10 V_HIC1_02_M01072 TRANSFAC - 1662600 1662614 1.0E-06 CCCGGGTGCCCGCAG 15 V_FOXO1_Q5_M01216 TRANSFAC - 1660319 1660327 8.0E-06 CAAAACAAA 9 V_IRF7_01_M00453 TRANSFAC + 1661844 1661861 9.0E-06 CTGGAATTTGAAAAACAC 18 V_SP4_Q5_M01273 TRANSFAC + 1662309 1662319 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC + 1662337 1662347 1.0E-06 GCCCCGCCCCC 11 V_EHF_03_M02052 TRANSFAC + 1660719 1660728 4.0E-06 CGCGGAAATA 10 V_YY1_03_M02044 TRANSFAC + 1664555 1664566 5.0E-06 GCGGCCATGTTG 12 V_MTF1_06_M02882 TRANSFAC + 1661506 1661519 5.0E-06 AGAAAAGAAAAAGA 14 V_MTF1_06_M02882 TRANSFAC + 1661824 1661837 3.0E-06 AAAAAAGAAAGAAA 14 V_MTF1_06_M02882 TRANSFAC + 1661847 1661860 1.0E-05 GAATTTGAAAAACA 14 V_NFYC_Q5_M02107 TRANSFAC + 1662073 1662086 1.0E-06 CGGCCAATCACAGC 14 V_FAC1_01_M00456 TRANSFAC - 1660317 1660330 2.0E-06 ATGCAAAACAAAAA 14 V_FAC1_01_M00456 TRANSFAC + 1661651 1661664 4.0E-06 ACTAAAAACACACA 14 V_CEBPA_01_M00116 TRANSFAC + 1661344 1661357 1.0E-06 AAATTACAAAAATT 14 V_FOXL1_02_M02857 TRANSFAC - 1660316 1660331 3.0E-06 GATGCAAAACAAAAAC 16 V_FOXJ3_06_M02855 TRANSFAC + 1660298 1660314 7.0E-06 AGTGACCAAACATAGCA 17 V_ZSCAN4_04_M02942 TRANSFAC + 1661654 1661669 2.0E-06 AAAAACACACAAATTA 16 V_NFY_01_M00287 TRANSFAC + 1662235 1662250 4.0E-06 GCTAGCCAATGGGAGC 16 V_FPM315_01_M01587 TRANSFAC + 1664670 1664681 7.0E-06 CGGGGAGGACGG 12 V_STAT1STAT1_Q3_M01212 TRANSFAC - 1661098 1661110 3.0E-06 CTTTCCCAGAAAC 13 V_FOX_Q2_M00809 TRANSFAC + 1663925 1663937 8.0E-06 TTATGTGTGTTTT 13 V_ZABC1_01_M01306 TRANSFAC + 1661695 1661702 1.0E-05 ATTCCAAC 8 V_ESE1_02_M02055 TRANSFAC + 1660719 1660728 5.0E-06 CGCGGAAATA 10 V_EGR1_06_M02744 TRANSFAC + 1662339 1662352 7.0E-06 CCCGCCCCCGCGCG 14 V_IRF1_Q6_01_M01881 TRANSFAC - 1661823 1661836 6.0E-06 TTCTTTCTTTTTTT 14 V_SOX2_Q6_M01272 TRANSFAC + 1660313 1660328 2.0E-06 CATGTTTTTGTTTTGC 16 V_HNF3B_Q6_M02014 TRANSFAC - 1664544 1664552 1.0E-05 TTGTTTGTT 9 V_PAX4_02_M00377 TRANSFAC + 1661341 1661351 3.0E-06 AAAAAATTACA 11 V_SP1_Q2_01_M00933 TRANSFAC + 1662338 1662347 4.0E-06 CCCCGCCCCC 10 V_MEF2A_05_M01301 TRANSFAC - 1663935 1663946 3.0E-06 GCTTATTTTAAA 12 V_ELF5_04_M02241 TRANSFAC - 1665936 1665944 2.0E-06 TATTTCCTT 9 V_MAFK_04_M02880 TRANSFAC + 1661340 1661354 7.0E-06 TAAAAAATTACAAAA 15 V_ZFP128_04_M02932 TRANSFAC + 1666081 1666094 9.0E-06 GATATAAGTATACT 14 V_ZFP128_04_M02932 TRANSFAC - 1666081 1666094 1.0E-06 AGTATACTTATATC 14 V_NFYA_Q5_M02106 TRANSFAC + 1662073 1662086 1.0E-06 CGGCCAATCACAGC 14 V_NFYA_Q5_M02106 TRANSFAC + 1662237 1662250 3.0E-06 TAGCCAATGGGAGC 14 V_AP2ALPHA_03_M01047 TRANSFAC + 1660785 1660799 7.0E-06 AGAGCCGAAGGCGAT 15 V_AP2ALPHA_03_M01047 TRANSFAC - 1660785 1660799 7.0E-06 ATCGCCTTCGGCTCT 15 V_SP1_Q4_01_M00932 TRANSFAC - 1660383 1660395 8.0E-06 AATGGGCGGGGTG 13 V_SP1_Q4_01_M00932 TRANSFAC - 1662336 1662348 1.0E-06 CGGGGGCGGGGCC 13 V_STAT1_Q6_M01823 TRANSFAC + 1661100 1661109 2.0E-06 TTCTGGGAAA 10 V_STAT1_05_M01260 TRANSFAC + 1661097 1661118 3.0E-06 CGTTTCTGGGAAAGTCGATGCG 22 V_PAX4_04_M00380 TRANSFAC + 1661496 1661525 6.0E-06 AAAAAAAAAAAGAAAAGAAAAAGAAACACT 30 V_PAX4_04_M00380 TRANSFAC + 1661498 1661527 1.0E-06 AAAAAAAAAGAAAAGAAAAAGAAACACTGG 30 V_PAX4_04_M00380 TRANSFAC + 1661818 1661847 0.0E+00 AAAAAAAAAAAAGAAAGAAAGAAACACTGG 30 V_SMAD1_01_M01590 TRANSFAC - 1660316 1660327 4.0E-06 CAAAACAAAAAC 12 V_SMAD1_01_M01590 TRANSFAC + 1661825 1661836 2.0E-06 AAAAAGAAAGAA 12 V_CEBPA_Q6_M01866 TRANSFAC - 1661345 1661357 7.0E-06 AATTTTTGTAATT 13 V_NANOG_02_M01247 TRANSFAC - 1660312 1660331 4.0E-06 GATGCAAAACAAAAACATGC 20 V_NANOG_02_M01247 TRANSFAC + 1661503 1661522 8.0E-06 AAAAGAAAAGAAAAAGAAAC 20 V_NANOG_02_M01247 TRANSFAC + 1661817 1661836 3.0E-06 AAAAAAAAAAAAAGAAAGAA 20 V_NANOG_02_M01247 TRANSFAC + 1661821 1661840 0.0E+00 AAAAAAAAAGAAAGAAAGAA 20 V_NANOG_02_M01247 TRANSFAC + 1661825 1661844 4.0E-06 AAAAAGAAAGAAAGAAACAC 20 V_ESE1_Q3_M01214 TRANSFAC + 1660719 1660728 5.0E-06 CGCGGAAATA 10 V_OCT4_01_M01125 TRANSFAC + 1665929 1665943 8.0E-06 TTTTGACAAGGAAAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.