Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PCDH19 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 57526 protocadherin 19 chrX - 99664771 - 99670271 99665271 Transcription Factor Binding Sites   Download all TFBS in the PCDH19 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints KLF16_C2H2_DBD_monomeric_11_1 SELEX - 99665404 99665414 1.0E-05 GCCCCGCCCCC 11 NFYA_MA0060.1 JASPAR + 99665333 99665348 1.0E-06 CCTGGCCAATCAGCGC 16 SP1_MA0079.2 JASPAR - 99665404 99665413 7.0E-06 CCCCGCCCCC 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 99664786 99664795 6.0E-06 AGCAGCTGCC 10 SP4_C2H2_full_monomeric_17_1 SELEX - 99665401 99665417 2.0E-06 TTGGCCCCGCCCCCCCG 17 TFCP2_CP2_full_dimer-of-dimers_16_1 SELEX + 99660645 99660660 7.0E-06 ACTGGTAGGAACCAGA 16 PITX1_homeodomain_full_monomeric_9_1 SELEX + 99668433 99668441 5.0E-06 TTTAATCCA 9 Myf_MA0055.1 JASPAR - 99665236 99665247 4.0E-06 CAGCAGCAGCAG 12 V_FOXP1_01_M00987 TRANSFAC - 99668446 99668465 8.0E-06 GTATTAGTATTTCTTAGTAG 20 V_SMAD3_Q6_01_M01888 TRANSFAC + 99665490 99665502 9.0E-06 GGACAGACAGGCC 13 V_NFY_Q6_M00185 TRANSFAC + 99665335 99665345 7.0E-06 TGGCCAATCAG 11 V_SP1_Q6_01_M00931 TRANSFAC + 99665371 99665380 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 99665405 99665414 4.0E-06 GGGGCGGGGC 10 V_MEF2_02_M00231 TRANSFAC + 99666109 99666130 9.0E-06 TAGCTCCCTATAAATAAACTGT 22 V_FOXO3A_Q1_M01137 TRANSFAC + 99668314 99668325 2.0E-06 TAAAAACAAGAA 12 V_SP1_03_M02281 TRANSFAC - 99665404 99665413 7.0E-06 CCCCGCCCCC 10 V_NFY_Q6_01_M00775 TRANSFAC + 99665332 99665344 4.0E-06 CCCTGGCCAATCA 13 V_BRN2_01_M00145 TRANSFAC - 99665056 99665071 9.0E-06 TTCATCCGAAATCCTA 16 V_MYF_01_M01302 TRANSFAC - 99665236 99665247 4.0E-06 CAGCAGCAGCAG 12 V_ZFP105_03_M02827 TRANSFAC + 99668311 99668325 3.0E-06 TAATAAAAACAAGAA 15 V_SP1_Q6_M00196 TRANSFAC + 99665403 99665415 0.0E+00 GGGGGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 99668369 99668381 6.0E-06 AGGAGGCGGGGCT 13 V_MEF2_03_M00232 TRANSFAC + 99666109 99666130 4.0E-06 TAGCTCCCTATAAATAAACTGT 22 V_ASCL2_03_M02737 TRANSFAC - 99664782 99664798 5.0E-06 TGTGGCAGCTGCTGAGG 17 V_ASCL2_03_M02737 TRANSFAC + 99664783 99664799 0.0E+00 CTCAGCAGCTGCCACAG 17 V_KLF7_03_M02773 TRANSFAC - 99665368 99665383 2.0E-06 TTGGCCCCGCCCCAAG 16 V_NKX3A_01_M00451 TRANSFAC - 99668454 99668465 9.0E-06 GTATTAGTATTT 12 V_SP3_Q3_M00665 TRANSFAC + 99665365 99665378 2.0E-06 AGTCTTGGGGCGGG 14 V_ZNF515_01_M01231 TRANSFAC + 99665390 99665399 1.0E-05 GCGGGGGGTA 10 V_SP4_Q5_M01273 TRANSFAC - 99665404 99665414 1.0E-06 GCCCCGCCCCC 11 V_PTF1BETA_Q6_M00657 TRANSFAC + 99665295 99665308 9.0E-06 GGAGAAAGCTCAAG 14 V_CAAT_01_M00254 TRANSFAC + 99665333 99665344 3.0E-06 CCTGGCCAATCA 12 V_LBP9_01_M01592 TRANSFAC + 99660646 99660662 4.0E-06 CTGGTAGGAACCAGATC 17 V_NFYC_Q5_M02107 TRANSFAC + 99665335 99665348 1.0E-06 TGGCCAATCAGCGC 14 V_FAC1_01_M00456 TRANSFAC + 99668312 99668325 6.0E-06 AATAAAAACAAGAA 14 V_FOXL1_04_M02753 TRANSFAC + 99668310 99668326 5.0E-06 ATAATAAAAACAAGAAA 17 V_PARP_Q3_M01211 TRANSFAC + 99668450 99668459 3.0E-06 TAAGAAATAC 10 V_NFY_01_M00287 TRANSFAC + 99665333 99665348 1.0E-06 CCTGGCCAATCAGCGC 16 V_FOXO3_01_M00477 TRANSFAC - 99668312 99668325 2.0E-06 TTCTTGTTTTTATT 14 V_PITX2_Q2_M00482 TRANSFAC + 99668433 99668443 4.0E-06 TTTAATCCAAC 11 V_SRF_06_M02916 TRANSFAC + 99668309 99668325 5.0E-06 GATAATAAAAACAAGAA 17 V_SP1_Q2_01_M00933 TRANSFAC - 99665404 99665413 4.0E-06 CCCCGCCCCC 10 V_NFYA_Q5_M02106 TRANSFAC + 99665335 99665348 1.0E-06 TGGCCAATCAGCGC 14 V_SP1_Q4_01_M00932 TRANSFAC + 99665403 99665415 1.0E-06 GGGGGGCGGGGCC 13 V_FOXK1_03_M02752 TRANSFAC + 99668310 99668326 1.0E-05 ATAATAAAAACAAGAAA 17 V_DMRT5_01_M01150 TRANSFAC - 99660612 99660626 0.0E+00 TTGTGTTACAGTTTC 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.