Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

KIAA1239 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 57495 KIAA1239 chr4 + 37241689 - 37247189 37246689 Transcription Factor Binding Sites   Download all TFBS in the KIAA1239 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Tp53_p53l_DBD_dimeric_18_1 SELEX + 37243464 37243481 8.0E-06 ACAAGTCATTTCACTTGT 18 Tp53_p53l_DBD_dimeric_18_1 SELEX - 37243464 37243481 1.0E-06 ACAAGTGAAATGACTTGT 18 TBP_MA0108.2 JASPAR + 37245775 37245789 0.0E+00 CTATAAAAACCCCGC 15 ZIC4_C2H2_DBD_monomeric_15_1 SELEX + 37246597 37246611 8.0E-06 GACCGCCTGCTGAGC 15 TCF7L1_HMG_full_monomeric_12_1 SELEX + 37247093 37247104 6.0E-06 AAACATCCAAGG 12 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX + 37244863 37244871 8.0E-06 GTAAAAAAA 9 SP1_MA0079.2 JASPAR + 37246309 37246318 9.0E-06 CCCCTCCTCC 10 THRB_nuclearreceptor_DBD_dimeric_19_1 SELEX - 37243454 37243472 9.0E-06 ATGACTTGTTCAAGGTCAC 19 RREB1_MA0073.1 JASPAR - 37244844 37244863 7.0E-06 CCCCACCCCAGCCCCAACAC 20 ZIC1_C2H2_full_monomeric_14_1 SELEX + 37246597 37246610 9.0E-06 GACCGCCTGCTGAG 14 V_DMRT4_01_M01149 TRANSFAC + 37241789 37241801 1.0E-05 AAAGTTAGAATTT 13 V_MEQ_01_M02049 TRANSFAC - 37244840 37244848 7.0E-06 AACACACAC 9 V_DEC2_Q2_M01843 TRANSFAC - 37245753 37245762 1.0E-06 GTTCACGTGC 10 V_STAT_Q6_M00777 TRANSFAC - 37247087 37247099 2.0E-06 GATGTTTCTTGGA 13 V_SP1_03_M02281 TRANSFAC + 37246309 37246318 9.0E-06 CCCCTCCTCC 10 V_AP2_Q6_M00189 TRANSFAC - 37246741 37246752 7.0E-06 CGCCCGCCGGAG 12 V_MEF2A_Q6_M02024 TRANSFAC + 37241846 37241855 5.0E-06 TATTTAAAAC 10 V_TATA_01_M00252 TRANSFAC + 37245775 37245789 0.0E+00 CTATAAAAACCCCGC 15 V_AMEF2_Q6_M00403 TRANSFAC - 37241839 37241856 1.0E-06 AGTTTTAAATAAAGTTAC 18 V_AP1_Q6_01_M00925 TRANSFAC - 37241802 37241810 7.0E-06 ATGACTCAG 9 V_MAZ_Q6_01_M02023 TRANSFAC - 37246308 37246321 1.0E-06 GTGGGAGGAGGGGG 14 V_TATA_C_M00216 TRANSFAC + 37245774 37245783 3.0E-06 GCTATAAAAA 10 V_SP1SP3_Q4_M01219 TRANSFAC + 37246308 37246318 1.0E-05 CCCCCTCCTCC 11 V_GRE_C_M00205 TRANSFAC - 37245632 37245647 7.0E-06 CTCACCGGCTGTTCTG 16 V_RREB1_01_M00257 TRANSFAC - 37244839 37244852 8.0E-06 CCCCAACACACACG 14 V_AP1_C_M00199 TRANSFAC - 37241802 37241810 6.0E-06 ATGACTCAG 9 V_ARID3A_04_M02735 TRANSFAC - 37241840 37241856 5.0E-06 AGTTTTAAATAAAGTTA 17 V_ARID3A_04_M02735 TRANSFAC + 37241841 37241857 3.0E-06 AACTTTATTTAAAACTG 17 V_TBP_06_M02814 TRANSFAC + 37241842 37241857 1.0E-06 ACTTTATTTAAAACTG 16 V_BLIMP1_Q6_M01066 TRANSFAC - 37243468 37243483 3.0E-06 AAACAAGTGAAATGAC 16 V_MAF_Q6_01_M00983 TRANSFAC + 37241800 37241810 4.0E-06 TTCTGAGTCAT 11 V_AP1_Q4_01_M00926 TRANSFAC + 37241803 37241810 1.0E-05 TGAGTCAT 8 V_LMX1B_01_M01363 TRANSFAC - 37241841 37241857 9.0E-06 CAGTTTTAAATAAAGTT 17 V_FRA1_Q5_M01267 TRANSFAC + 37241803 37241810 1.0E-05 TGAGTCAT 8 V_FPM315_01_M01587 TRANSFAC - 37246310 37246321 4.0E-06 GTGGGAGGAGGG 12 V_ASCL2_04_M02841 TRANSFAC - 37244852 37244867 7.0E-06 TTTACCCCACCCCAGC 16 V_MTATA_B_M00320 TRANSFAC + 37245773 37245789 1.0E-05 GGCTATAAAAACCCCGC 17 V_E47_01_M00002 TRANSFAC - 37245491 37245505 2.0E-06 AGTGCAGGTGGCCGT 15 V_HOXA10_01_M01464 TRANSFAC + 37244860 37244875 9.0E-06 GGGGTAAAAAAATGAA 16 V_TCF3_05_M02920 TRANSFAC + 37244859 37244873 9.0E-06 TGGGGTAAAAAAATG 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.