Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

AMIGO1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 57463 adhesion molecule with Ig-like domain 1 chr1 - 110051836 - 110057336 110052336 Transcription Factor Binding Sites   Download all TFBS in the AMIGO1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX10_HMG_full_dimeric_15_3 SELEX - 110054238 110054252 3.0E-06 ATGAATTTAAGTGAG 15 IRF7_IRF_DBD_dimeric_14_1 SELEX - 110056185 110056198 5.0E-06 AAGAAAGCAAAAAA 14 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 110052403 110052413 1.0E-05 GCCCCGCCCCC 11 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX + 110056074 110056085 6.0E-06 TAAATGCAATTT 12 Lhx8_homeodomain_DBD_dimeric_12_1 SELEX - 110056074 110056085 7.0E-06 AAATTGCATTTA 12 STAT1_MA0137.2 JASPAR + 110053064 110053078 1.0E-06 CCATTCCTGGAAACT 15 SP1_MA0079.2 JASPAR - 110052403 110052412 7.0E-06 CCCCGCCCCC 10 FOXI1_MA0042.1 JASPAR + 110056090 110056101 6.0E-06 GGTTGTTTGGTT 12 Stat3_MA0144.1 JASPAR + 110053067 110053076 4.0E-06 TTCCTGGAAA 10 SOX21_HMG_DBD_dimeric_16_1 SELEX - 110053056 110053071 8.0E-06 AGGAATGGAAATTGTC 16 Tp53_p53l_DBD_dimeric_17_1 SELEX + 110053046 110053062 3.0E-06 ACAAGCCAGGGACAATT 17 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX + 110056166 110056179 3.0E-06 TTTCTCCACACTAC 14 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 110056166 110056177 6.0E-06 TTTCTCCACACT 12 Sox2_MA0143.1 JASPAR + 110054278 110054292 4.0E-06 CTATTCTTATCCATA 15 V_AML3_Q6_M01856 TRANSFAC + 110048639 110048646 1.0E-05 AACCACAA 8 V_MAFB_03_M02879 TRANSFAC + 110053178 110053192 3.0E-06 CAATTGCAACATAGT 15 V_SP1_Q6_01_M00931 TRANSFAC + 110052404 110052413 4.0E-06 GGGGCGGGGC 10 V_EGR_Q6_M00807 TRANSFAC + 110052335 110052345 6.0E-06 GTGGGGGCAGC 11 V_CEBP_01_M00159 TRANSFAC + 110056093 110056105 6.0E-06 TGTTTGGTTAGCT 13 V_STAT5B_01_M00459 TRANSFAC + 110053064 110053078 7.0E-06 CCATTCCTGGAAACT 15 V_SP1_03_M02281 TRANSFAC - 110052403 110052412 7.0E-06 CCCCGCCCCC 10 V_NFAT2_01_M01748 TRANSFAC - 110053059 110053067 5.0E-06 ATGGAAATT 9 V_BARBIE_01_M00238 TRANSFAC + 110056115 110056129 7.0E-06 AGCAAAAGCAGCTGG 15 V_WT1_Q6_01_M02036 TRANSFAC - 110052400 110052409 4.0E-06 CGCCCCCGCC 10 V_ETS_Q4_M00771 TRANSFAC - 110053099 110053110 9.0E-06 AATGACTTCCTC 12 V_TAL1_Q6_M00993 TRANSFAC - 110056121 110056130 3.0E-06 TCCAGCTGCT 10 V_AML2_01_M01759 TRANSFAC + 110048639 110048646 1.0E-05 AACCACAA 8 V_KROX_Q6_M00982 TRANSFAC - 110052398 110052411 0.0E+00 CCCGCCCCCGCCGC 14 V_HOXA3_07_M02869 TRANSFAC - 110056195 110056208 5.0E-06 ATTAGCTATTAAGA 14 V_SP1_Q6_M00196 TRANSFAC + 110052402 110052414 2.0E-06 CGGGGGCGGGGCG 13 V_EGR1_Q6_M01873 TRANSFAC + 110052401 110052410 4.0E-06 GCGGGGGCGG 10 V_HNF1_Q6_01_M01011 TRANSFAC - 110056188 110056208 5.0E-06 ATTAGCTATTAAGAAAGCAAA 21 V_ISRE_01_M00258 TRANSFAC + 110053189 110053203 9.0E-06 TAGTTTCTCTGTTAC 15 V_JUNDM2_04_M02876 TRANSFAC + 110052733 110052748 7.0E-06 ATTCATTAGTCACATT 16 V_STAT3_03_M01595 TRANSFAC - 110053062 110053077 1.0E-06 GTTTCCAGGAATGGAA 16 V_IRX3_01_M01318 TRANSFAC + 110056173 110056189 9.0E-06 ACACTACAAGTATTTTT 17 V_IRF7_01_M00453 TRANSFAC - 110056182 110056199 9.0E-06 TAAGAAAGCAAAAAATAC 18 V_SP4_Q5_M01273 TRANSFAC - 110052403 110052413 1.0E-06 GCCCCGCCCCC 11 V_IRX3_02_M01485 TRANSFAC + 110056173 110056189 8.0E-06 ACACTACAAGTATTTTT 17 V_CIZ_01_M00734 TRANSFAC - 110056183 110056191 6.0E-06 CAAAAAATA 9 V_POU5F1_01_M01307 TRANSFAC + 110056076 110056085 9.0E-06 AATGCAATTT 10 V_TAL1_01_M01591 TRANSFAC + 110056160 110056172 4.0E-06 ATTCCTTTTCTCC 13 V_ZFP206_01_M01742 TRANSFAC - 110052388 110052398 9.0E-06 CGCGCACGCGC 11 V_ETS1_B_M00339 TRANSFAC - 110052545 110052559 8.0E-06 GGAGGAAGTTATAGC 15 V_ETS1_B_M00339 TRANSFAC + 110053098 110053112 6.0E-06 GGAGGAAGTCATTCA 15 V_OCT1_07_M00248 TRANSFAC - 110053059 110053070 6.0E-06 GGAATGGAAATT 12 V_STAT5A_01_M00457 TRANSFAC + 110053064 110053078 7.0E-06 CCATTCCTGGAAACT 15 V_SOX2_01_M02246 TRANSFAC + 110054278 110054292 4.0E-06 CTATTCTTATCCATA 15 V_SOX15_04_M02903 TRANSFAC + 110056073 110056087 0.0E+00 CTAAATGCAATTTGA 15 V_SP1_Q2_01_M00933 TRANSFAC - 110052403 110052412 4.0E-06 CCCCGCCCCC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC + 110052400 110052413 2.0E-06 GGCGGGGGCGGGGC 14 V_SP1_Q4_01_M00932 TRANSFAC + 110052402 110052414 3.0E-06 CGGGGGCGGGGCG 13 V_DMRT1_01_M01146 TRANSFAC + 110053181 110053195 6.0E-06 TTGCAACATAGTTTC 15 V_STAT1_05_M01260 TRANSFAC - 110053057 110053078 1.0E-06 AGTTTCCAGGAATGGAAATTGT 22 V_NF1_Q6_M00193 TRANSFAC + 110054262 110054279 7.0E-06 TGTTGGCAGGAAACCTCT 18 V_NANOG_02_M01247 TRANSFAC - 110054273 110054292 2.0E-06 TATGGATAAGAATAGAGGTT 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.