Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

JPH3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 57338 junctophilin 3 chr16 + 87631492 - 87636992 87636492 Transcription Factor Binding Sites   Download all TFBS in the JPH3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX10_HMG_full_dimeric_15_3 SELEX - 87636569 87636583 1.0E-06 AGGAATTTCAGTCAA 15 SOX21_HMG_DBD_dimeric_13_2 SELEX - 87636570 87636582 2.0E-06 GGAATTTCAGTCA 13 SOX9_HMG_full_dimeric_17_3 SELEX - 87636568 87636584 0.0E+00 GAGGAATTTCAGTCAAT 17 SOX7_HMG_full_dimeric_17_2 SELEX - 87636568 87636584 1.0E-06 GAGGAATTTCAGTCAAT 17 ZNF524_C2H2_full_dimeric_12_1 SELEX + 87635555 87635566 6.0E-06 ACTCTTGGACCC 12 SOX8_HMG_full_dimeric_13_1 SELEX - 87636571 87636583 1.0E-06 AGGAATTTCAGTC 13 Sox17_HMG_DBD_dimeric_15_2 SELEX - 87636569 87636583 4.0E-06 AGGAATTTCAGTCAA 15 SOX2_HMG_full_dimeric_15_1 SELEX - 87636569 87636583 2.0E-06 AGGAATTTCAGTCAA 15 SP1_MA0079.2 JASPAR + 87635544 87635553 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR - 87635847 87635856 7.0E-06 CCCCGCCCCC 10 Atf4_bZIP_DBD_dimeric_14_1 SELEX - 87639413 87639426 6.0E-06 AATGTGATGCAAGA 14 SOX14_HMG_DBD_dimeric_15_1 SELEX - 87636569 87636583 4.0E-06 AGGAATTTCAGTCAA 15 SOX18_HMG_full_dimeric_15_3 SELEX - 87636569 87636583 1.0E-06 AGGAATTTCAGTCAA 15 Sox3_HMG_DBD_dimeric_17_3 SELEX - 87636568 87636584 2.0E-06 GAGGAATTTCAGTCAAT 17 Sox1_HMG_DBD_dimeric_15_2 SELEX - 87636569 87636583 3.0E-06 AGGAATTTCAGTCAA 15 V_SP1_03_M02281 TRANSFAC + 87635544 87635553 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC - 87635847 87635856 7.0E-06 CCCCGCCCCC 10 V_SP1_02_M01303 TRANSFAC + 87635848 87635858 8.0E-06 GGGGCGGGGGC 11 V_HELIOSA_02_M01004 TRANSFAC + 87636548 87636558 1.0E-05 AAAAGGAATAA 11 V_KROX_Q6_M00982 TRANSFAC - 87635689 87635702 1.0E-06 CCCGCCCCCGCGCC 14 V_KROX_Q6_M00982 TRANSFAC - 87635848 87635861 2.0E-06 GGCGCCCCCGCCCC 14 V_SP1_Q6_M00196 TRANSFAC + 87635846 87635858 2.0E-06 AGGGGGCGGGGGC 13 V_REST_01_M01256 TRANSFAC - 87638501 87638522 1.0E-05 CAGGGAAGCTCTCCAACCTGCT 22 V_SP1SP3_Q4_M01219 TRANSFAC - 87635844 87635854 1.0E-06 CCGCCCCCTCC 11 V_SP4_Q5_M01273 TRANSFAC - 87635847 87635857 5.0E-06 CCCCCGCCCCC 11 V_FPM315_01_M01587 TRANSFAC + 87637735 87637746 0.0E+00 GAGGGAGGAGGG 12 V_ZFP281_01_M01597 TRANSFAC - 87635544 87635554 2.0E-06 GGGGGGAGGGG 11 V_EGR1_06_M02744 TRANSFAC - 87635689 87635702 9.0E-06 CCCGCCCCCGCGCC 14 V_ZFP281_04_M02831 TRANSFAC + 87635542 87635556 3.0E-06 CCCCCCTCCCCCCAC 15 V_PLAGL1_03_M02786 TRANSFAC + 87635851 87635866 3.0E-06 GCGGGGGCGCCCCGGC 16 V_SOX15_04_M02903 TRANSFAC + 87636569 87636583 9.0E-06 TTGACTGAAATTCCT 15 V_SP1_Q2_01_M00933 TRANSFAC - 87635847 87635856 4.0E-06 CCCCGCCCCC 10 V_SP1_Q4_01_M00932 TRANSFAC + 87635846 87635858 2.0E-06 AGGGGGCGGGGGC 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.