Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

REXO4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 57109 REX4, RNA exonuclease 4 homolog (S. cerevisiae) chr9 - 136282664 - 136288164 136283164 Transcription Factor Binding Sites   Download all TFBS in the REXO4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX - 136280534 136280546 2.0E-06 GTAAAAAAAAAAA 13 SOX10_HMG_full_dimeric_16_1 SELEX - 136281986 136282001 9.0E-06 AAAAATGTGCACTCTG 16 HOXC13_homeodomain_DBD_monomeric_11_1 SELEX - 136280540 136280550 4.0E-06 TCTTGTAAAAA 11 SPIC_ETS_full_monomeric_14_1 SELEX + 136285642 136285655 9.0E-06 CAAATGAGGAAGGC 14 LHX6_homeodomain_full_dimeric_16_1 SELEX + 136285661 136285676 9.0E-06 TGCTTAGTTCTGATTG 16 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 136282861 136282877 7.0E-06 AAAAACAAGAAGAAAAA 17 POU5F1P1_POU_DBD_monomeric_9_1 SELEX + 136285638 136285646 2.0E-06 TATGCAAAT 9 POU2F3_POU_DBD_monomeric_9_1 SELEX + 136285638 136285646 2.0E-06 TATGCAAAT 9 HOXD13_homeodomain_DBD_monomeric_11_1 SELEX - 136280540 136280550 5.0E-06 TCTTGTAAAAA 11 Mafb_bZIP_DBD_monomeric_12_1 SELEX - 136285828 136285839 9.0E-06 CATTTGCTGACT 12 POU1F1_POU_DBD_monomeric_14_1 SELEX + 136285636 136285649 0.0E+00 CTTATGCAAATGAG 14 NFYA_MA0060.1 JASPAR - 136285667 136285682 0.0E+00 ATTAACCAATCAGAAC 16 POU2F2_POU_DBD_monomeric_11_1 SELEX + 136285637 136285647 1.0E-06 TTATGCAAATG 11 POU3F4_POU_DBD_monomeric_9_1 SELEX + 136285638 136285646 2.0E-06 TATGCAAAT 9 SCRT2_C2H2_DBD_monomeric_13_1 SELEX - 136280416 136280428 5.0E-06 ACTCAACAGGTAC 13 IRF7_IRF_DBD_trimeric_17_1 SELEX - 136280525 136280541 4.0E-06 AAAAAAAAAAGCGATTT 17 Pou2f2_POU_DBD_monomeric_9_1 SELEX + 136285638 136285646 2.0E-06 TATGCAAAT 9 SPIB_ETS_DBD_monomeric_14_1 SELEX - 136280446 136280459 8.0E-06 TGAAAAGGGAAGTG 14 NFKB2_NFAT_DBD_dimeric_13_1 SELEX + 136286918 136286930 6.0E-06 AGGTGAATCCCCC 13 REL_MA0101.1 JASPAR + 136285791 136285800 6.0E-06 GGGGCTTTCC 10 POU3F3_POU_DBD_monomeric_13_1 SELEX + 136285636 136285648 2.0E-06 CTTATGCAAATGA 13 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 136282010 136282023 7.0E-06 AATTAGTATTTACT 14 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX - 136280538 136280546 8.0E-06 GTAAAAAAA 9 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 136280533 136280546 2.0E-06 GTAAAAAAAAAAAA 14 BCL6B_C2H2_DBD_monomeric_17_1 SELEX + 136285793 136285809 5.0E-06 GGCTTTCCAGGAACGCA 17 TFCP2_CP2_full_dimeric_10_1 SELEX + 136283187 136283196 5.0E-06 AAACCGGATC 10 SCRT1_C2H2_DBD_monomeric_15_1 SELEX - 136280414 136280428 9.0E-06 ACTCAACAGGTACCC 15 NRL_bZIP_DBD_monomeric_11_1 SELEX - 136285829 136285839 8.0E-06 CATTTGCTGAC 11 NFKB1_NFAT_DBD_dimeric_13_1 SELEX + 136286918 136286930 3.0E-06 AGGTGAATCCCCC 13 NFKB1_NFAT_DBD_dimeric_13_1 SELEX - 136286918 136286930 2.0E-06 GGGGGATTCACCT 13 Msx3_homeodomain_DBD_dimeric_18_1 SELEX - 136285671 136285688 8.0E-06 GCAAGTATTAACCAATCA 18 HESX1_homeodomain_DBD_dimeric_15_1 SELEX + 136282008 136282022 7.0E-06 TCAATTAGTATTTAC 15 POU3F1_POU_DBD_monomeric_12_1 SELEX + 136285637 136285648 0.0E+00 TTATGCAAATGA 12 LHX9_homeodomain_DBD_dimeric_13_1 SELEX - 136282009 136282021 9.0E-06 TAAATACTAATTG 13 Stat3_MA0144.1 JASPAR - 136285796 136285805 4.0E-06 TTCCTGGAAA 10 HOXB13_homeodomain_DBD_monomeric_11_1 SELEX - 136280540 136280550 7.0E-06 TCTTGTAAAAA 11 HOXA13_homeodomain_full_monomeric_11_1 SELEX - 136280540 136280550 1.0E-06 TCTTGTAAAAA 11 POU2F1_POU_DBD_monomeric_12_1 SELEX + 136285636 136285647 1.0E-06 CTTATGCAAATG 12 POU3F2_POU_DBD_monomeric_12_1 SELEX + 136285637 136285648 0.0E+00 TTATGCAAATGA 12 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 136280532 136280544 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 136280534 136280546 1.0E-06 GTAAAAAAAAAAA 13 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX - 136280533 136280546 1.0E-06 GTAAAAAAAAAAAA 14 V_MEQ_01_M02049 TRANSFAC + 136281961 136281969 2.0E-06 AACACACAT 9 V_FOXP1_01_M00987 TRANSFAC + 136282861 136282880 5.0E-06 TTTTTCTTCTTGTTTTTCTT 20 V_ER_Q6_02_M00959 TRANSFAC + 136285709 136285719 2.0E-06 CAGGTCACAGT 11 V_SPI1_01_M01203 TRANSFAC - 136280443 136280459 6.0E-06 TGAAAAGGGAAGTGGTC 17 V_ZSCAN4_03_M02838 TRANSFAC + 136281985 136282001 9.0E-06 GCAGAGTGCACATTTTT 17 V_GEN_INI_B_M00315 TRANSFAC - 136285643 136285650 1.0E-05 CCTCATTT 8 V_TCF3_01_M01594 TRANSFAC - 136285571 136285583 6.0E-06 TCTTTGTTCTCTT 13 V_NFKB_Q6_01_M00774 TRANSFAC - 136285790 136285805 7.0E-06 TTCCTGGAAAGCCCCC 16 V_CDX2_Q5_01_M01659 TRANSFAC + 136280597 136280607 3.0E-06 GTCATAAATGA 11 V_CDX2_Q5_01_M01659 TRANSFAC + 136284372 136284382 7.0E-06 TCAATAAATGT 11 V_CHOP_01_M00249 TRANSFAC - 136281952 136281964 7.0E-06 TGTTGCAATCCCC 13 V_FOXA2_04_M02749 TRANSFAC - 136282011 136282027 8.0E-06 TTGAAGTAAATACTAAT 17 V_BCL6B_03_M02740 TRANSFAC + 136285794 136285809 8.0E-06 GCTTTCCAGGAACGCA 16 V_NFY_Q6_M00185 TRANSFAC - 136285670 136285680 0.0E+00 TAACCAATCAG 11 V_EVI1_04_M00081 TRANSFAC - 136281876 136281890 2.0E-06 GGAAAAGTTTAAATA 15 V_BCL6_01_M01183 TRANSFAC + 136280463 136280478 7.0E-06 TATCTAGAAAGAATTT 16 V_MAFB_05_M02775 TRANSFAC - 136285824 136285840 3.0E-06 CCATTTGCTGACTAGGG 17 V_STAT_Q6_M00777 TRANSFAC - 136283088 136283100 6.0E-06 GTCTTTTCCTGGA 13 V_RELBP52_01_M01239 TRANSFAC + 136285791 136285800 4.0E-06 GGGGCTTTCC 10 V_MAFB_03_M02879 TRANSFAC - 136280537 136280551 4.0E-06 ATCTTGTAAAAAAAA 15 V_OCT1_Q5_01_M00930 TRANSFAC - 136285638 136285648 1.0E-06 TCATTTGCATA 11 V_MEF2_02_M00231 TRANSFAC - 136281870 136281891 2.0E-06 TGGAAAAGTTTAAATAGATCAT 22 V_CEBP_C_M00201 TRANSFAC - 136281951 136281968 1.0E-06 TGTGTGTTGCAATCCCCA 18 V_OCT1_01_M00135 TRANSFAC + 136285633 136285651 1.0E-06 CCACTTATGCAAATGAGGA 19 V_POU2F3_01_M01476 TRANSFAC + 136285635 136285650 0.0E+00 ACTTATGCAAATGAGG 16 V_MAF_Q6_M00648 TRANSFAC - 136280442 136280457 0.0E+00 AAAAGGGAAGTGGTCT 16 V_OCT_C_M00210 TRANSFAC - 136285637 136285649 0.0E+00 CTCATTTGCATAA 13 V_HOXC6_01_M01406 TRANSFAC - 136282010 136282026 9.0E-06 TGAAGTAAATACTAATT 17 V_NERF_Q2_M00531 TRANSFAC + 136286844 136286861 9.0E-06 TGGCAGGAAGTGTAGGTG 18 V_PU1_Q4_M01172 TRANSFAC + 136281889 136281907 7.0E-06 CCAGCCTATTTCCTCATCT 19 V_PU1_Q4_M01172 TRANSFAC + 136282855 136282873 5.0E-06 AACCTTTTTTTCTTCTTGT 19 V_PU1_Q4_M01172 TRANSFAC + 136282858 136282876 1.0E-06 CTTTTTTTCTTCTTGTTTT 19 V_NFY_Q6_01_M00775 TRANSFAC - 136285671 136285683 0.0E+00 TATTAACCAATCA 13 V_TCFAP2E_04_M02926 TRANSFAC - 136280531 136280544 4.0E-06 AAAAAAAAAAAAAG 14 V_TCFAP2E_04_M02926 TRANSFAC - 136280532 136280545 0.0E+00 TAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 136280533 136280546 1.0E-05 GTAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 136280534 136280547 6.0E-06 TGTAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 136280535 136280548 2.0E-06 TTGTAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 136280538 136280551 4.0E-06 ATCTTGTAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC - 136282858 136282871 6.0E-06 AAGAAGAAAAAAAG 14 V_TCFAP2E_04_M02926 TRANSFAC - 136282861 136282874 3.0E-06 AACAAGAAGAAAAA 14 V_HOXA13_03_M01430 TRANSFAC - 136280538 136280553 5.0E-06 GAATCTTGTAAAAAAA 16 V_HOXC13_01_M01317 TRANSFAC - 136280538 136280553 3.0E-06 GAATCTTGTAAAAAAA 16 V_NKX62_Q2_M00489 TRANSFAC - 136282014 136282025 4.0E-06 GAAGTAAATACT 12 V_REX1_01_M01695 TRANSFAC - 136285835 136285844 4.0E-06 GCAGCCATTT 10 V_NFY_C_M00209 TRANSFAC + 136285669 136285682 0.0E+00 TCTGATTGGTTAAT 14 V_ELF4_04_M02850 TRANSFAC - 136280530 136280546 0.0E+00 GTAAAAAAAAAAAAAGC 17 V_ELF4_04_M02850 TRANSFAC - 136280531 136280547 2.0E-06 TGTAAAAAAAAAAAAAG 17 V_ELF4_04_M02850 TRANSFAC - 136280532 136280548 1.0E-06 TTGTAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 136280533 136280549 2.0E-06 CTTGTAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC - 136280534 136280550 1.0E-05 TCTTGTAAAAAAAAAAA 17 V_GEN_INI3_B_M00314 TRANSFAC - 136285643 136285650 1.0E-05 CCTCATTT 8 V_ZFP105_03_M02827 TRANSFAC - 136280529 136280543 2.0E-06 AAAAAAAAAAAAGCG 15 V_ZFP105_03_M02827 TRANSFAC - 136280530 136280544 9.0E-06 AAAAAAAAAAAAAGC 15 V_ZFP105_03_M02827 TRANSFAC - 136280531 136280545 0.0E+00 TAAAAAAAAAAAAAG 15 V_ZFP105_03_M02827 TRANSFAC - 136280532 136280546 3.0E-06 GTAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC - 136280533 136280547 0.0E+00 TGTAAAAAAAAAAAA 15 V_MYCMAX_02_M00123 TRANSFAC + 136282051 136282062 1.0E-05 CATCACATGTCT 12 V_SOX8_04_M02912 TRANSFAC - 136280594 136280607 9.0E-06 TCATTTATGACACC 14 V_POLY_C_M00212 TRANSFAC - 136283633 136283650 0.0E+00 AAATAAAGCCCTTTCCTT 18 V_CREL_01_M00053 TRANSFAC + 136285791 136285800 6.0E-06 GGGGCTTTCC 10 V_OCT1_05_M00161 TRANSFAC - 136285636 136285649 1.0E-06 CTCATTTGCATAAG 14 V_IRF_Q6_M00772 TRANSFAC - 136280600 136280614 7.0E-06 TTTCTTTTCATTTAT 15 V_SOX_Q6_M01014 TRANSFAC - 136285563 136285575 4.0E-06 CTCTTTGTTCCCT 13 V_SOX_Q6_M01014 TRANSFAC - 136285572 136285584 7.0E-06 TTCTTTGTTCTCT 13 V_ELF5_01_M01197 TRANSFAC - 136281895 136281905 4.0E-06 ATGAGGAAATA 11 V_HOX13_01_M00023 TRANSFAC + 136281998 136282027 4.0E-06 TTTTAGGAGCTCAATTAGTATTTACTTCAA 30 V_NFE4_Q5_M02105 TRANSFAC + 136287398 136287409 5.0E-06 CACCCTAGCCAC 12 V_SPIB_01_M01204 TRANSFAC + 136285642 136285658 9.0E-06 CAAATGAGGAAGGCACA 17 V_TEL2_Q6_M00678 TRANSFAC - 136286847 136286856 8.0E-06 ACACTTCCTG 10 V_MEF2_Q6_01_M00941 TRANSFAC + 136283641 136283652 2.0E-06 GGCTTTATTTAG 12 V_CDP_02_M00102 TRANSFAC - 136281867 136281881 5.0E-06 TAAATAGATCATCTA 15 V_NKX3A_01_M00451 TRANSFAC + 136282009 136282020 9.0E-06 CAATTAGTATTT 12 V_STAT3_03_M01595 TRANSFAC + 136285795 136285810 3.0E-06 CTTTCCAGGAACGCAG 16 V_SOX11_03_M02795 TRANSFAC + 136285571 136285587 0.0E+00 AAGAGAACAAAGAAAGA 17 V_CTCF_01_M01200 TRANSFAC - 136286921 136286940 8.0E-06 ATGACCAGCAGGGGGATTCA 20 V_OCT1_B_M00342 TRANSFAC + 136285638 136285647 2.0E-06 TATGCAAATG 10 V_OCT_Q6_M00795 TRANSFAC - 136285638 136285648 0.0E+00 TCATTTGCATA 11 V_FOXO1_Q5_M01216 TRANSFAC - 136282869 136282877 8.0E-06 AAAAACAAG 9 V_GATA4_Q3_M00632 TRANSFAC - 136282058 136282069 3.0E-06 AGATAGCAGACA 12 V_BCL6B_04_M02844 TRANSFAC - 136286899 136286914 2.0E-06 CTTTCCACCCCTCAAA 16 V_ELF1_Q6_M00746 TRANSFAC - 136281896 136281907 3.0E-06 AGATGAGGAAAT 12 V_HOXB7_01_M01396 TRANSFAC + 136282012 136282027 7.0E-06 TTAGTATTTACTTCAA 16 V_CAAT_01_M00254 TRANSFAC - 136285671 136285682 0.0E+00 ATTAACCAATCA 12 V_SOX15_03_M02799 TRANSFAC + 136281904 136281920 7.0E-06 ATCTGTACAATAGAGAT 17 V_ALPHACP1_01_M00687 TRANSFAC - 136285670 136285680 5.0E-06 TAACCAATCAG 11 V_MTF1_06_M02882 TRANSFAC - 136280530 136280543 5.0E-06 AAAAAAAAAAAAGC 14 V_MTF1_06_M02882 TRANSFAC - 136280531 136280544 1.0E-06 AAAAAAAAAAAAAG 14 V_MTF1_06_M02882 TRANSFAC - 136280532 136280545 4.0E-06 TAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC - 136282859 136282872 3.0E-06 CAAGAAGAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC - 136282867 136282880 4.0E-06 AAGAAAAACAAGAA 14 V_TAL1_01_M01591 TRANSFAC + 136281897 136281909 4.0E-06 TTTCCTCATCTGT 13 V_OCT2_01_M01368 TRANSFAC + 136285635 136285650 0.0E+00 ACTTATGCAAATGAGG 16 V_OCT1_Q6_M00195 TRANSFAC + 136285635 136285649 4.0E-06 ACTTATGCAAATGAG 15 V_GEN_INI2_B_M00313 TRANSFAC - 136285643 136285650 1.0E-05 CCTCATTT 8 V_NFY_01_M00287 TRANSFAC - 136285667 136285682 0.0E+00 ATTAACCAATCAGAAC 16 V_FOXO3_01_M00477 TRANSFAC + 136282867 136282880 8.0E-06 TTCTTGTTTTTCTT 14 V_NFAT2_02_M01749 TRANSFAC - 136285558 136285568 1.0E-05 TTCCCTGGAAT 11 V_SIX4_01_M01374 TRANSFAC - 136280589 136280605 0.0E+00 ATTTATGACACCCCCCA 17 V_SRF_06_M02916 TRANSFAC - 136280528 136280544 2.0E-06 AAAAAAAAAAAAAGCGA 17 V_SRF_06_M02916 TRANSFAC - 136280529 136280545 4.0E-06 TAAAAAAAAAAAAAGCG 17 V_SRF_06_M02916 TRANSFAC - 136280530 136280546 0.0E+00 GTAAAAAAAAAAAAAGC 17 V_SRF_06_M02916 TRANSFAC - 136280531 136280547 0.0E+00 TGTAAAAAAAAAAAAAG 17 V_SRF_06_M02916 TRANSFAC - 136280532 136280548 0.0E+00 TTGTAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC - 136280533 136280549 0.0E+00 CTTGTAAAAAAAAAAAA 17 V_FOXJ2_01_M00422 TRANSFAC - 136282011 136282028 5.0E-06 CTTGAAGTAAATACTAAT 18 V_VMAF_01_M00035 TRANSFAC - 136285820 136285838 7.0E-06 ATTTGCTGACTAGGGTCAC 19 V_SOX12_03_M02796 TRANSFAC - 136285570 136285583 1.0E-05 TCTTTGTTCTCTTT 14 V_CMAF_01_M01070 TRANSFAC + 136287026 136287044 7.0E-06 GTTTGTGATGATGCTGAGA 19 V_GATA6_04_M02757 TRANSFAC - 136280456 136280472 5.0E-06 TTTCTAGATAAGCTGAA 17 V_NFYA_Q5_M02106 TRANSFAC - 136285667 136285680 0.0E+00 TAACCAATCAGAAC 14 V_HOXD10_01_M01375 TRANSFAC + 136281872 136281888 1.0E-05 GATCTATTTAAACTTTT 17 V_STAT1_05_M01260 TRANSFAC + 136285794 136285815 5.0E-06 GCTTTCCAGGAACGCAGAATGT 22 V_SMAD1_01_M01590 TRANSFAC - 136282860 136282871 7.0E-06 AAGAAGAAAAAA 12 V_SMAD1_01_M01590 TRANSFAC + 136285573 136285584 7.0E-06 GAGAACAAAGAA 12 V_SOX9_Q4_M01284 TRANSFAC + 136285575 136285585 9.0E-06 GAACAAAGAAA 11 V_NANOG_02_M01247 TRANSFAC - 136280526 136280545 8.0E-06 TAAAAAAAAAAAAAGCGATT 20 V_NANOG_02_M01247 TRANSFAC - 136282856 136282875 7.0E-06 AAACAAGAAGAAAAAAAGGT 20 V_NANOG_02_M01247 TRANSFAC + 136285569 136285588 3.0E-06 CAAAGAGAACAAAGAAAGAG 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.