Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PCBP4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 57060 poly(rC) binding protein 4 chr3 - 51996408 - 52006482 51996908 Transcription Factor Binding Sites   Download all TFBS in the PCBP4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints RXRG_nuclearreceptor_full_dimeric_14_2 SELEX + 52002219 52002232 7.0E-06 GGGGTGATGAACTG 14 EOMES_TBX_DBD_dimeric_20_1 SELEX + 52002354 52002373 4.0E-06 TGGCACCTGGGTATGTGTGG 20 NF-kappaB_MA0061.1 JASPAR + 51998444 51998453 9.0E-06 GGGGATTCCC 10 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX + 51998223 51998234 8.0E-06 TGACAGCTGTGT 12 ESRRG_nuclearreceptor_full_dimeric_17_1 SELEX - 51996973 51996989 9.0E-06 AATGTCTAGCAAGGGCA 17 EWSR1-FLI1_MA0149.1 JASPAR - 51998253 51998270 5.0E-06 GGGGGAGGGGCAGGAAGG 18 NFIX_NFI_full_dimeric_15_2 SELEX + 51998185 51998199 9.0E-06 CTGGCTTTCTGCCAC 15 NFKB1_MA0105.1 JASPAR + 51998443 51998453 9.0E-06 GGGGGATTCCC 11 NFKB1_MA0105.1 JASPAR + 51998444 51998454 9.0E-06 GGGGATTCCCT 11 Meis3_MEIS_DBD_dimeric_12_1 SELEX + 51998223 51998234 6.0E-06 TGACAGCTGTGT 12 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 51998223 51998234 9.0E-06 ACACAGCTGTCA 12 ZNF740_C2H2_full_monomeric_10_1 SELEX + 52001514 52001523 3.0E-06 CCCCCCCCAC 10 ESR1_MA0112.2 JASPAR + 52002308 52002327 6.0E-06 CAGCCTGGTCCCACTGACCT 20 SP1_MA0079.2 JASPAR + 51998261 51998270 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR - 51998388 51998397 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR + 52001550 52001559 7.0E-06 CCCCGCCCCC 10 SP1_MA0079.2 JASPAR - 52002457 52002466 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR - 52002490 52002499 3.0E-06 CCCCTCCCCC 10 PHOX2B_homeodomain_full_dimeric_11_1 SELEX - 52002533 52002543 7.0E-06 TGATGCAATTA 11 Otx1_homeodomain_DBD_dimeric_15_1 SELEX - 52002297 52002311 7.0E-06 GCTGAGCCGATTATG 15 ATF4_bZIP_DBD_dimeric_13_1 SELEX - 52002534 52002546 6.0E-06 AAGTGATGCAATT 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX - 52002534 52002547 7.0E-06 AAAGTGATGCAATT 14 Meis2_MEIS_DBD_dimeric_12_1 SELEX + 51998223 51998234 5.0E-06 TGACAGCTGTGT 12 MEIS2_MEIS_DBD_dimeric_14_1 SELEX + 51998288 51998301 7.0E-06 ATGACAGCTGCCCA 14 Zfp740_C2H2_DBD_monomeric_10_1 SELEX + 52001514 52001523 5.0E-06 CCCCCCCCAC 10 PHOX2A_homeodomain_DBD_dimeric_11_1 SELEX - 52002533 52002543 9.0E-06 TGATGCAATTA 11 Sox2_MA0143.1 JASPAR + 51998362 51998376 9.0E-06 CCTTTGTTCTGGAGC 15 TAL1_TCF3_MA0091.1 JASPAR + 52002434 52002445 2.0E-06 GGACCATCTGGT 12 V_ESR1_01_M02261 TRANSFAC + 52002308 52002327 6.0E-06 CAGCCTGGTCCCACTGACCT 20 V_NF1A_Q6_M02103 TRANSFAC + 51998185 51998200 6.0E-06 CTGGCTTTCTGCCACT 16 V_TCF4_Q5_01_M02033 TRANSFAC + 51997014 51997023 2.0E-06 ATCAAAGCAC 10 V_TCF4_Q5_01_M02033 TRANSFAC + 51998302 51998311 4.0E-06 ATCAAAGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 52001621 52001630 4.0E-06 GGGGCGGGGC 10 V_ZFP740_03_M02834 TRANSFAC + 52002279 52002294 4.0E-06 CCTTCCCCCCCACTCC 16 V_P50P50_Q3_M01223 TRANSFAC - 51998124 51998136 6.0E-06 GAGGGAATGCCCG 13 V_P50P50_Q3_M01223 TRANSFAC - 51998443 51998455 1.0E-06 GAGGGAATCCCCC 13 V_PLAG1_02_M01973 TRANSFAC + 51998250 51998265 9.0E-06 CCCCCTTCCTGCCCCT 16 V_SP1_03_M02281 TRANSFAC + 51998261 51998270 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC - 51998388 51998397 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC + 52001550 52001559 7.0E-06 CCCCGCCCCC 10 V_SP1_03_M02281 TRANSFAC - 52002457 52002466 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC - 52002490 52002499 3.0E-06 CCCCTCCCCC 10 V_SPZ1_01_M00446 TRANSFAC - 51998126 51998140 1.0E-06 TCAGGAGGGAATGCC 15 V_PPAR_DR1_Q2_M00763 TRANSFAC - 52002418 52002430 6.0E-06 TGCCCTTTGTCCA 13 V_SP1_02_M01303 TRANSFAC - 52001516 52001526 5.0E-06 GGGGTGGGGGG 11 V_SP1_02_M01303 TRANSFAC - 52001548 52001558 3.0E-06 GGGGCGGGGAG 11 V_HEN1_01_M00068 TRANSFAC - 52001440 52001461 4.0E-06 ATTGTTCGCAGCTGATGTCACT 22 V_HEN1_01_M00068 TRANSFAC - 52002430 52002451 8.0E-06 GGCGGGACCAGATGGTCCCCCT 22 V_PPARGRXRA_01_M02262 TRANSFAC + 52002416 52002430 8.0E-06 GGTGGACAAAGGGCA 15 V_ZNF219_01_M01122 TRANSFAC - 51998213 51998224 4.0E-06 CACCCCCCCGCC 12 V_ZNF219_01_M01122 TRANSFAC + 52001510 52001521 1.0E-06 CGCCCCCCCCCC 12 V_ZNF219_01_M01122 TRANSFAC + 52001867 52001878 7.0E-06 CACCCCCATCCC 12 V_ZNF219_01_M01122 TRANSFAC + 52002250 52002261 5.0E-06 CACCCCCCGCCC 12 V_ZNF219_01_M01122 TRANSFAC - 52002452 52002463 1.0E-05 CTCCCCCACCCC 12 V_ZNF219_01_M01122 TRANSFAC - 52002485 52002496 1.0E-05 CTCCCCCACCCC 12 V_FKLF_Q5_M01837 TRANSFAC - 52002570 52002579 2.0E-06 GGGGTGGGAG 10 V_HNF4_01_B_M00411 TRANSFAC + 52002417 52002431 5.0E-06 GTGGACAAAGGGCAG 15 V_SP4_03_M02810 TRANSFAC + 52001548 52001564 3.0E-06 CTCCCCGCCCCCTCCCC 17 V_KROX_Q6_M00982 TRANSFAC + 52001508 52001521 8.0E-06 CGCGCCCCCCCCCC 14 V_KROX_Q6_M00982 TRANSFAC + 52001551 52001564 0.0E+00 CCCGCCCCCTCCCC 14 V_KROX_Q6_M00982 TRANSFAC - 52002452 52002465 8.0E-06 CCCTCCCCCACCCC 14 V_KROX_Q6_M00982 TRANSFAC - 52002485 52002498 8.0E-06 CCCTCCCCCACCCC 14 V_ZBP89_Q4_M01816 TRANSFAC - 52002456 52002465 4.0E-06 CCCTCCCCCA 10 V_ZBP89_Q4_M01816 TRANSFAC - 52002489 52002498 4.0E-06 CCCTCCCCCA 10 V_CEBPD_Q6_M00621 TRANSFAC + 52002534 52002545 0.0E+00 AATTGCATCACT 12 V_SP1_Q6_M00196 TRANSFAC - 52001620 52001632 7.0E-06 GCGGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC + 52002456 52002468 7.0E-06 TGGGGGAGGGGCC 13 V_MAZ_Q6_01_M02023 TRANSFAC + 51998388 51998401 0.0E+00 GGGGGAGGGGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 52001514 52001527 1.0E-06 GGGGGTGGGGGGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 52001546 52001559 2.0E-06 GGGGGCGGGGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 52002278 52002291 5.0E-06 GTGGGGGGGAAGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC + 52002370 52002383 0.0E+00 GTGGGTGGGGAGGG 14 V_SREBP_Q6_M01168 TRANSFAC + 51998324 51998338 4.0E-06 CAGCTCACCCCACAT 15 V_SP1SP3_Q4_M01219 TRANSFAC - 51998207 51998217 5.0E-06 CCGCCTCCTCC 11 V_SP1SP3_Q4_M01219 TRANSFAC + 52001552 52001562 1.0E-06 CCGCCCCCTCC 11 V_TAL1BETAE47_01_M00065 TRANSFAC - 52002433 52002448 1.0E-06 GGGACCAGATGGTCCC 16 V_NFKAPPAB50_01_M00051 TRANSFAC + 51998444 51998453 2.0E-06 GGGGATTCCC 10 V_MUSCLE_INI_B_M00321 TRANSFAC + 52001512 52001532 3.0E-06 CCCCCCCCCCACCCCCCGGCC 21 V_TAL1BETAITF2_01_M00070 TRANSFAC - 52002433 52002448 1.0E-06 GGGACCAGATGGTCCC 16 V_SP4_Q5_M01273 TRANSFAC + 51998260 51998270 5.0E-06 GCCCCTCCCCC 11 V_SP4_Q5_M01273 TRANSFAC + 52001544 52001554 7.0E-06 GCCCCTCCCCG 11 V_SP4_Q5_M01273 TRANSFAC + 52001549 52001559 9.0E-06 TCCCCGCCCCC 11 V_SP4_Q5_M01273 TRANSFAC + 52001621 52001631 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC - 52002457 52002467 5.0E-06 GCCCCTCCCCC 11 V_SP4_Q5_M01273 TRANSFAC - 52002490 52002500 5.0E-06 GCCCCTCCCCC 11 V_MYOD_Q6_02_M02100 TRANSFAC - 51998223 51998231 4.0E-06 CAGCTGTCA 9 V_MYOD_Q6_02_M02100 TRANSFAC + 51998272 51998280 8.0E-06 CAGCTGTCT 9 V_GABPBETA_Q3_M01876 TRANSFAC - 52002394 52002404 1.0E-05 AGAGGAAGGGA 11 V_TCFE2A_03_M02823 TRANSFAC - 52002351 52002367 6.0E-06 ATACCCAGGTGCCAAGA 17 V_DR1_Q3_M00762 TRANSFAC + 52002418 52002430 9.0E-06 TGGACAAAGGGCA 13 V_CAAT_C_M00200 TRANSFAC + 52002387 52002411 4.0E-06 TCCAATCTCCCTTCCTCTCCATCTG 25 V_TAL1ALPHAE47_01_M00066 TRANSFAC - 52002433 52002448 2.0E-06 GGGACCAGATGGTCCC 16 V_NKX22_01_M00485 TRANSFAC - 51997018 51997027 1.0E-05 ACAAGTGCTT 10 V_ZFP281_01_M01597 TRANSFAC - 51998261 51998271 2.0E-06 GGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 51998387 51998397 7.0E-06 CGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 52001518 52001528 4.0E-06 GGGGGGTGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 52001716 52001726 9.0E-06 TGGGGGTAGGG 11 V_ZFP281_01_M01597 TRANSFAC + 52002456 52002466 1.0E-06 TGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC + 52002489 52002499 1.0E-06 TGGGGGAGGGG 11 V_NFKAPPAB_01_M00054 TRANSFAC + 51998444 51998453 9.0E-06 GGGGATTCCC 10 V_SOX2_01_M02246 TRANSFAC + 51998362 51998376 9.0E-06 CCTTTGTTCTGGAGC 15 V_ZFP281_04_M02831 TRANSFAC + 51998259 51998273 2.0E-06 TGCCCCTCCCCCCCA 15 V_ZFP281_04_M02831 TRANSFAC + 52001510 52001524 2.0E-06 CGCCCCCCCCCCACC 15 V_ZFP281_04_M02831 TRANSFAC + 52002327 52002341 4.0E-06 TCCACCTCCCCCCAC 15 V_ZFP281_04_M02831 TRANSFAC - 52002454 52002468 3.0E-06 GGCCCCTCCCCCACC 15 V_ZFP281_04_M02831 TRANSFAC - 52002487 52002501 4.0E-06 CGCCCCTCCCCCACC 15 V_EWSR1FLI1_01_M02252 TRANSFAC - 51998253 51998270 5.0E-06 GGGGGAGGGGCAGGAAGG 18 V_SOX4_01_M01308 TRANSFAC - 51998362 51998369 1.0E-05 AACAAAGG 8 V_PR_02_M00957 TRANSFAC + 52002216 52002242 8.0E-06 GTGGGGGTGATGAACTGTTCTCAAGTC 27 V_CTF1_01_M01196 TRANSFAC - 51998185 51998198 2.0E-06 TGGCAGAAAGCCAG 14 V_SP1_Q2_01_M00933 TRANSFAC + 52001550 52001559 4.0E-06 CCCCGCCCCC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC - 51998260 51998273 2.0E-06 TGGGGGGGAGGGGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 51998385 51998398 9.0E-06 TCCGGGGGAGGGGA 14 V_UF1H3BETA_Q6_M01068 TRANSFAC - 52001511 52001524 1.0E-06 GGTGGGGGGGGGGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 52002454 52002467 0.0E+00 GGTGGGGGAGGGGC 14 V_UF1H3BETA_Q6_M01068 TRANSFAC + 52002487 52002500 0.0E+00 GGTGGGGGAGGGGC 14 V_SP1_Q4_01_M00932 TRANSFAC - 52001548 52001560 5.0E-06 AGGGGGCGGGGAG 13 V_SP1_Q4_01_M00932 TRANSFAC + 52002456 52002468 8.0E-06 TGGGGGAGGGGCC 13 V_SREBP1_Q5_M01173 TRANSFAC + 51998324 51998338 9.0E-06 CAGCTCACCCCACAT 15 TLX1_NFIC_MA0119.1 JASPAR - 51998185 51998198 2.0E-06 TGGCAGAAAGCCAG 14 V_SMAD1_01_M01590 TRANSFAC - 51998361 51998372 1.0E-06 CAGAACAAAGGC 12 V_SOX9_Q4_M01284 TRANSFAC + 51998301 51998311 6.0E-06 AATCAAAGGGC 11 V_SOX9_Q4_M01284 TRANSFAC - 51998360 51998370 4.0E-06 GAACAAAGGCA 11 PPARG_RXRA_MA0065.2 JASPAR + 52002416 52002430 8.0E-06 GGTGGACAAAGGGCA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.