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PRDM9 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 56979 PR domain containing 9 chr5 + 23502723 - 23508223 23507723 Transcription Factor Binding Sites   Download all TFBS in the PRDM9 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HOXD12_homeodomain_DBD_monomeric_9_1 SELEX + 23507437 23507445 1.0E-06 GTAATAAAA 9 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX + 23507437 23507446 2.0E-06 GTAATAAAAC 10 Hoxd9_homeodomain_DBD_monomeric_10_1 SELEX + 23507437 23507446 9.0E-06 GTAATAAAAC 10 NFYA_MA0060.1 JASPAR - 23507657 23507672 0.0E+00 GCCAGCCAATCAGCAC 16 ZNF238_C2H2_full_monomeric_13_1 SELEX - 23507163 23507175 8.0E-06 TTCACAGATGTTG 13 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX + 23507436 23507445 0.0E+00 AGTAATAAAA 10 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX + 23507437 23507445 1.0E-06 GTAATAAAA 9 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX + 23507437 23507446 5.0E-06 GTAATAAAAC 10 HOXC11_homeodomain_full_monomeric_11_2 SELEX + 23507436 23507446 1.0E-06 AGTAATAAAAC 11 SP1_MA0079.2 JASPAR + 23507534 23507543 3.0E-06 CCCCTCCCCC 10 HOXA13_homeodomain_full_monomeric_10_1 SELEX + 23507437 23507446 1.0E-05 GTAATAAAAC 10 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 23507437 23507446 8.0E-06 GTAATAAAAC 10 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX + 23507436 23507446 2.0E-06 AGTAATAAAAC 11 CDX2_homeodomain_DBD_monomeric_9_1 SELEX + 23507437 23507445 1.0E-06 GTAATAAAA 9 CDX1_homeodomain_DBD_monomeric_9_1 SELEX + 23507437 23507445 1.0E-06 GTAATAAAA 9 HOXA10_homeodomain_DBD_monomeric_11_1 SELEX + 23507436 23507446 1.0E-06 AGTAATAAAAC 11 V_RP58_01_M00532 TRANSFAC + 23507162 23507173 9.0E-06 ACAACATCTGTG 12 V_AP2_Q6_01_M00915 TRANSFAC - 23507364 23507376 1.0E-05 CCCTCCGCAGGCC 13 V_SP1_03_M02281 TRANSFAC + 23507534 23507543 3.0E-06 CCCCTCCCCC 10 V_HOXD13_01_M01404 TRANSFAC + 23507434 23507449 3.0E-06 CAAGTAATAAAACCCT 16 V_NFY_C_M00209 TRANSFAC + 23507659 23507672 2.0E-06 GCTGATTGGCTGGC 14 V_SRF_C_M00215 TRANSFAC + 23507142 23507156 1.0E-05 ACCAAAATTGGCCAG 15 V_GC_01_M00255 TRANSFAC - 23507531 23507544 3.0E-06 TGGGGGAGGGGCCT 14 V_MTERF_01_M01245 TRANSFAC - 23507142 23507155 8.0E-06 TGGCCAATTTTGGT 14 V_ZBED6_01_M01598 TRANSFAC + 23507638 23507649 3.0E-06 CGGGCTCGCCTT 12 V_MRF2_01_M00454 TRANSFAC + 23507133 23507146 2.0E-06 AACTACAACACCAA 14 V_ZBP89_Q4_M01816 TRANSFAC + 23507535 23507544 4.0E-06 CCCTCCCCCA 10 V_OLF1_01_M00261 TRANSFAC - 23507708 23507729 7.0E-06 TCAGAGTCCCTCAGGAGGTGAG 22 V_HOXB9_01_M01426 TRANSFAC + 23507434 23507449 1.0E-06 CAAGTAATAAAACCCT 16 V_SP1_Q6_M00196 TRANSFAC - 23507532 23507544 7.0E-06 TGGGGGAGGGGCC 13 V_FOXK1_04_M02856 TRANSFAC + 23507131 23507145 8.0E-06 CTAACTACAACACCA 15 V_MAZ_Q6_01_M02023 TRANSFAC + 23507492 23507505 0.0E+00 CTGGGAGGGGAGGG 14 V_PBX1_05_M01967 TRANSFAC + 23507573 23507586 6.0E-06 CGTGACTGACAGGC 14 V_SP4_Q5_M01273 TRANSFAC + 23507533 23507543 5.0E-06 GCCCCTCCCCC 11 V_ALPHACP1_01_M00687 TRANSFAC - 23507660 23507670 1.0E-06 CAGCCAATCAG 11 V_SMAD4_04_M02898 TRANSFAC + 23507599 23507615 1.0E-05 TACTCCCCGCCCATTTA 17 V_TAL1ALPHAE47_01_M00066 TRANSFAC - 23507161 23507176 3.0E-06 TTTCACAGATGTTGTA 16 V_ZFP206_01_M01742 TRANSFAC + 23507456 23507466 8.0E-06 TGCGCCTGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 23507457 23507467 4.0E-06 CGCGCAGGCGC 11 V_NFY_01_M00287 TRANSFAC - 23507657 23507672 0.0E+00 GCCAGCCAATCAGCAC 16 V_ASCL2_04_M02841 TRANSFAC + 23507599 23507614 5.0E-06 TACTCCCCGCCCATTT 16 V_ZFP281_01_M01597 TRANSFAC - 23507534 23507544 1.0E-06 TGGGGGAGGGG 11 V_ZFP281_04_M02831 TRANSFAC + 23507532 23507546 3.0E-06 GGCCCCTCCCCCACC 15 V_UF1H3BETA_Q6_M01068 TRANSFAC - 23507533 23507546 0.0E+00 GGTGGGGGAGGGGC 14 V_NFYA_Q5_M02106 TRANSFAC - 23507657 23507670 0.0E+00 CAGCCAATCAGCAC 14 V_SP1_Q4_01_M00932 TRANSFAC - 23507532 23507544 8.0E-06 TGGGGGAGGGGCC 13

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