Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

FAM20C Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 56975 family with sequence similarity 20, member C chr7 + 187968 - 193468 192968 Transcription Factor Binding Sites   Download all TFBS in the FAM20C promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Egr1_MA0162.1 JASPAR + 194947 194957 1.0E-06 TGCGTGGGCGG 11 Sox1_HMG_DBD_dimeric_14_1 SELEX + 191744 191757 4.0E-06 TGAACACACATGCA 14 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 195027 195044 2.0E-06 CTCATTAAAATCAAATTT 18 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 195028 195044 1.0E-06 TCATTAAAATCAAATTT 17 NHLH1_MA0048.1 JASPAR + 192297 192308 6.0E-06 CCGCAGCTGCTG 12 NHLH1_MA0048.1 JASPAR - 192297 192308 8.0E-06 CAGCAGCTGCGG 12 Arx_homeodomain_DBD_dimeric_13_1 SELEX + 195033 195045 6.0E-06 AAAATCAAATTTA 13 ZNF435_C2H2_full_dimeric_18_1 SELEX + 197968 197985 3.0E-06 GGTGTGGACAGAGCCCTT 1 EWSR1-FLI1_MA0149.1 JASPAR + 192428 192445 6.0E-06 GGGGAGGAGGAAGGAGAG 18 EWSR1-FLI1_MA0149.1 JASPAR - 194995 195012 1.0E-06 GGGAGAGAGGAAGGAGGC 18 Alx1_homeodomain_DBD_dimeric_13_1 SELEX + 195033 195045 1.0E-05 AAAATCAAATTTA 13 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX - 195441 195458 9.0E-06 TGGGTTCAAGCAAGTGCA 18 SOX9_HMG_DBD_monomeric_9_1 SELEX + 191363 191371 9.0E-06 GAACAATGG 9 EGR1_C2H2_full_monomeric_14_1 SELEX - 194945 194958 7.0E-06 GCCGCCCACGCAGC 14 ZNF238_C2H2_full_monomeric_13_1 SELEX - 195434 195446 6.0E-06 AGTGCAGATGTGT 13 ALX3_homeodomain_full_dimeric_13_1 SELEX + 195033 195045 9.0E-06 AAAATCAAATTTA 13 EGR2_C2H2_full_monomeric_15_1 SELEX - 194945 194959 6.0E-06 CGCCGCCCACGCAGC 15 SP1_MA0079.2 JASPAR + 194780 194789 7.0E-06 CCCCGCCCCC 10 FOXB1_forkhead_DBD_putative-multimer_14_1 SELEX - 195350 195363 9.0E-06 TAATAACACGGTGA 14 DRGX_homeodomain_DBD_dimeric_13_1 SELEX + 195033 195045 8.0E-06 AAAATCAAATTTA 13 Alx4_homeodomain_DBD_dimeric_13_1 SELEX + 195033 195045 5.0E-06 AAAATCAAATTTA 13 ATF4_bZIP_DBD_dimeric_13_1 SELEX - 195049 195061 1.0E-05 CAATGATGCAAGA 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX - 195049 195062 7.0E-06 ACAATGATGCAAGA 14 Egr3_C2H2_DBD_monomeric_15_1 SELEX + 191810 191824 6.0E-06 CACGCACACGCACAT 15 Egr3_C2H2_DBD_monomeric_15_1 SELEX - 194944 194958 8.0E-06 GCCGCCCACGCAGCC 15 SP1_C2H2_DBD_monomeric_11_1 SELEX + 194779 194789 4.0E-06 ACCCCGCCCCC 11 Gata1_MA0035.2 JASPAR - 188394 188404 5.0E-06 ACAGATAACAA 11 Mycn_MA0104.2 JASPAR - 189258 189267 3.0E-06 ACCACGTGGC 10 EGR4_C2H2_DBD_monomeric_16_2 SELEX + 191809 191824 1.0E-06 ACACGCACACGCACAT 16 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 195027 195044 2.0E-06 CTCATTAAAATCAAATTT 18 Hltf_MA0109.1 JASPAR - 191292 191301 6.0E-06 ATACTTATAA 10 Myf_MA0055.1 JASPAR - 191682 191693 9.0E-06 AACCAGCTGGTG 12 Meis2_MEIS_DBD_dimeric_12_1 SELEX + 191722 191733 8.0E-06 TGACAGATGAGA 12 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX + 194405 194415 1.0E-06 TTTCCCCACCC 11 EGR2_C2H2_DBD_monomeric_11_1 SELEX - 194947 194957 1.0E-06 CCGCCCACGCA 11 SOX9_MA0077.1 JASPAR + 191363 191371 5.0E-06 GAACAATGG 9 TP53_MA0106.1 JASPAR + 194666 194685 9.0E-06 AAGGAAATGCTTGGAAATTT 20 PLAG1_MA0163.1 JASPAR - 191872 191885 1.0E-06 GGGGCCGACGGGGG 14 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 194405 194416 8.0E-06 TTTCCCCACCCC 12 NRF1_NRF_full_dimeric_12_1 SELEX + 191832 191843 1.0E-05 CACACATGCGCA 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 195027 195044 1.0E-06 CTCATTAAAATCAAATTT 18 NHLH1_bHLH_full_dimeric_10_1 SELEX + 192298 192307 4.0E-06 CGCAGCTGCT 10 NHLH1_bHLH_full_dimeric_10_1 SELEX - 192298 192307 5.0E-06 AGCAGCTGCG 10 HNF1A_MA0046.1 JASPAR - 194471 194484 7.0E-06 GGTTAATGTTCCAC 14 Zfx_MA0146.1 JASPAR - 193175 193188 4.0E-06 CCGGCCCGGGCCTG 14 V_RUSH1A_02_M01107 TRANSFAC - 191292 191301 6.0E-06 ATACTTATAA 10 V_NFAT_Q4_01_M00935 TRANSFAC + 194676 194685 7.0E-06 TTGGAAATTT 10 V_HOXA9_01_M01351 TRANSFAC + 195024 195040 4.0E-06 GCTCTCATTAAAATCAA 17 V_MEQ_01_M02049 TRANSFAC + 191746 191754 2.0E-06 AACACACAT 9 V_MEQ_01_M02049 TRANSFAC + 191792 191800 7.0E-06 AACACACAC 9 V_NFKB_C_M00208 TRANSFAC - 194566 194577 6.0E-06 AGGGACTTTCAA 12 V_ZSCAN4_03_M02838 TRANSFAC + 191754 191770 0.0E+00 TGCATGTGCACACACAC 17 V_GATA2_02_M00348 TRANSFAC - 188395 188404 5.0E-06 ACAGATAACA 10 TAL1_TCF3_MA0091.1 JASPAR + 191681 191692 8.0E-06 CCACCAGCTGGT 12 TAL1_TCF3_MA0091.1 JASPAR - 191683 191694 7.0E-06 CAACCAGCTGGT 12 V_ZFX_01_M01593 TRANSFAC + 192272 192287 4.0E-06 GGCCAGGCCGGAGCCC 16 V_GM397_03_M02760 TRANSFAC - 191753 191769 9.0E-06 TGTGTGTGCACATGCAT 17 V_GM397_03_M02760 TRANSFAC + 191754 191770 1.0E-06 TGCATGTGCACACACAC 17 V_MMEF2_Q6_M00405 TRANSFAC + 195027 195042 7.0E-06 CTCATTAAAATCAAAT 16 V_SP1_Q6_01_M00931 TRANSFAC - 194779 194788 7.0E-06 GGGGCGGGGT 10 V_ZTA_Q2_M00711 TRANSFAC - 195329 195341 2.0E-06 TAATTCTTACTCA 13 V_ZFP740_03_M02834 TRANSFAC - 191978 191993 6.0E-06 TCCCCCCCCCCCCGCC 16 V_ZFP740_03_M02834 TRANSFAC - 191980 191995 1.0E-05 CGTCCCCCCCCCCCCG 16 V_NFAT3_Q3_M01734 TRANSFAC + 189324 189333 3.0E-06 TTATTTTCCT 10 V_SP1_03_M02281 TRANSFAC + 194780 194789 7.0E-06 CCCCGCCCCC 10 V_EGR1_02_M01972 TRANSFAC + 194947 194957 1.0E-06 TGCGTGGGCGG 11 V_SP1_02_M01303 TRANSFAC - 194773 194783 5.0E-06 GGGGTGGGGGG 11 V_SP1_02_M01303 TRANSFAC - 194778 194788 3.0E-06 GGGGCGGGGTG 11 V_HEN1_01_M00068 TRANSFAC + 192292 192313 3.0E-06 CTCGGCCGCAGCTGCTGGCCTG 22 V_AP4_Q6_02_M01860 TRANSFAC - 192222 192234 3.0E-06 CCAGCTGCAGCCT 13 V_GM497_04_M02864 TRANSFAC + 191779 191794 8.0E-06 AGACGCACACACAAAC 16 V_CMYC_02_M01154 TRANSFAC + 189257 189268 2.0E-06 GGCCACGTGGTC 12 V_CMYC_02_M01154 TRANSFAC - 189257 189268 1.0E-06 GACCACGTGGCC 12 V_CEBPB_01_M00109 TRANSFAC - 188840 188853 9.0E-06 GAATTAGGAAAGCT 14 V_TAL1_GATA1_01_M02243 TRANSFAC - 188396 188413 1.0E-06 GTGGAAAAGACAGATAAC 18 V_BARBIE_01_M00238 TRANSFAC + 195078 195092 6.0E-06 AACAAAAGCAGAGAG 15 V_ETS_Q4_M00771 TRANSFAC - 194756 194767 3.0E-06 ATACACTTCCTG 12 V_FOXA2_02_M02853 TRANSFAC - 188390 188404 9.0E-06 ACAGATAACAAGAGA 15 V_EGR1_01_M00243 TRANSFAC + 194946 194957 4.0E-06 CTGCGTGGGCGG 12 V_MYF_01_M01302 TRANSFAC - 191682 191693 9.0E-06 AACCAGCTGGTG 12 V_CEBPE_Q6_M01868 TRANSFAC + 188838 188851 2.0E-06 CAAGCTTTCCTAAT 14 V_MYCMAX_01_M00118 TRANSFAC + 189256 189269 3.0E-06 GGGCCACGTGGTCT 14 V_MYCMAX_01_M00118 TRANSFAC - 189256 189269 3.0E-06 AGACCACGTGGCCC 14 V_CART1_01_M00416 TRANSFAC + 191381 191398 7.0E-06 CCTTAATTCACATCAGAG 18 V_HNF1_Q6_M00790 TRANSFAC - 194468 194485 1.0E-06 TGGTTAATGTTCCACTGC 18 V_CMYC_01_M01145 TRANSFAC + 189257 189268 5.0E-06 GGCCACGTGGTC 12 V_CMYC_01_M01145 TRANSFAC - 189257 189268 5.0E-06 GACCACGTGGCC 12 V_NFAT_Q6_M00302 TRANSFAC - 189325 189336 1.0E-06 CATAGGAAAATA 12 V_AMEF2_Q6_M00403 TRANSFAC - 195033 195050 8.0E-06 GAGGCTAAATTTGATTTT 18 V_SP1_Q6_M00196 TRANSFAC - 194778 194790 4.0E-06 CGGGGGCGGGGTG 13 MYC_MAX_MA0059.1 JASPAR + 189257 189267 6.0E-06 GGCCACGTGGT 11 MYC_MAX_MA0059.1 JASPAR - 189258 189268 4.0E-06 GACCACGTGGC 11 V_MAZ_Q6_01_M02023 TRANSFAC + 191975 191988 1.0E-05 GTGGGCGGGGGGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 194421 194434 2.0E-06 GGCGGAGGGAGGGG 14 V_EGR1_Q6_M01873 TRANSFAC + 194948 194957 7.0E-06 GCGTGGGCGG 10 V_HNF1_Q6_01_M01011 TRANSFAC + 194467 194487 7.0E-06 AGCAGTGGAACATTAACCACG 21 V_MATH1_Q2_M01716 TRANSFAC - 191682 191691 3.0E-06 CCAGCTGGTG 10 Tal1_Gata1_MA0140.1 JASPAR - 188396 188413 1.0E-06 GTGGAAAAGACAGATAAC 18 V_SP1SP3_Q4_M01219 TRANSFAC - 191981 191991 7.0E-06 CCCCCCCCCCC 11 V_SP1SP3_Q4_M01219 TRANSFAC - 191982 191992 7.0E-06 CCCCCCCCCCC 11 V_SP1SP3_Q4_M01219 TRANSFAC + 192080 192090 5.0E-06 CCGCCTCCTCC 11 V_USF_01_M00121 TRANSFAC + 189256 189269 2.0E-06 GGGCCACGTGGTCT 14 V_USF_01_M00121 TRANSFAC - 189256 189269 2.0E-06 AGACCACGTGGCCC 14 V_AHRARNT_02_M00237 TRANSFAC - 191841 191859 9.0E-06 GGCGTGTGCGTGTGTGTGC 19 V_TEL2_Q6_M00678 TRANSFAC - 194756 194765 8.0E-06 ACACTTCCTG 10 V_GATA1_09_M02254 TRANSFAC - 188394 188404 5.0E-06 ACAGATAACAA 11 V_RREB1_01_M00257 TRANSFAC + 191787 191800 6.0E-06 ACACAAACACACAC 14 V_PAX8_01_M00717 TRANSFAC + 191342 191356 9.0E-06 CAGAGATGAGTGATT 15 V_KLF7_03_M02773 TRANSFAC + 188933 188948 9.0E-06 CCTGCCCCGCCCTTAG 16 V_HNF4_DR1_Q3_M00764 TRANSFAC + 193100 193112 6.0E-06 TGGACCTTGACCC 13 V_STAT4_Q5_M02117 TRANSFAC + 194663 194672 5.0E-06 TTCAAGGAAA 10 V_MYCN_01_M02259 TRANSFAC - 189258 189267 3.0E-06 ACCACGTGGC 10 V_SP1_01_M00008 TRANSFAC - 194779 194788 3.0E-06 GGGGCGGGGT 10 V_LMO2COM_01_M00277 TRANSFAC - 192611 192622 9.0E-06 GGGCAGGTGCAG 12 V_EGR2_01_M00246 TRANSFAC + 194946 194957 2.0E-06 CTGCGTGGGCGG 12 V_SOX9_B1_M00410 TRANSFAC + 191360 191373 7.0E-06 CAGGAACAATGGGC 14 V_PAX8_B_M00328 TRANSFAC + 191341 191358 7.0E-06 TCAGAGATGAGTGATTCC 18 V_FOXO1_Q5_M01216 TRANSFAC - 188382 188390 1.0E-05 AAAAACAGA 9 V_TFIII_Q6_M00706 TRANSFAC + 197669 197677 6.0E-06 AGAGGGAGG 9 V_USF_Q6_01_M00796 TRANSFAC - 189257 189268 9.0E-06 GACCACGTGGCC 12 V_GATA1_05_M00346 TRANSFAC - 188395 188404 1.0E-06 ACAGATAACA 10 V_MAZR_01_M00491 TRANSFAC + 191983 191995 6.0E-06 GGGGGGGGGGACG 13 V_AP4_01_M00005 TRANSFAC - 191678 191695 1.0E-06 ACAACCAGCTGGTGGCTT 18 V_IPF1_05_M01255 TRANSFAC + 195026 195037 2.0E-06 TCTCATTAAAAT 12 V_MAX_01_M00119 TRANSFAC + 189256 189269 9.0E-06 GGGCCACGTGGTCT 14 V_MAX_01_M00119 TRANSFAC - 189256 189269 9.0E-06 AGACCACGTGGCCC 14 V_HEN1_02_M00058 TRANSFAC + 192292 192313 3.0E-06 CTCGGCCGCAGCTGCTGGCCTG 22 V_HEN1_02_M00058 TRANSFAC - 192292 192313 8.0E-06 CAGGCCAGCAGCTGCGGCCGAG 22 V_DELTAEF1_01_M00073 TRANSFAC - 194832 194842 1.0E-06 ATTCACCTAAA 11 V_HNF4_Q6_01_M01031 TRANSFAC - 193099 193112 6.0E-06 GGGTCAAGGTCCAT 14 V_FPM315_01_M01587 TRANSFAC + 192427 192438 2.0E-06 AGGGGAGGAGGA 12 V_ASCL2_04_M02841 TRANSFAC + 195006 195021 7.0E-06 CTCTCCCCACCCAAGG 16 V_NRF1_Q6_M00652 TRANSFAC + 191834 191843 9.0E-06 CACATGCGCA 10 V_ZFP281_01_M01597 TRANSFAC - 194408 194418 4.0E-06 GGGGGGTGGGG 11 V_OCT1_06_M00162 TRANSFAC - 195033 195046 2.0E-06 CTAAATTTGATTTT 14 V_ZFP281_04_M02831 TRANSFAC - 191979 191993 2.0E-06 TCCCCCCCCCCCCGC 15 V_ZFP281_04_M02831 TRANSFAC - 191980 191994 5.0E-06 GTCCCCCCCCCCCCG 15 V_ZFP281_04_M02831 TRANSFAC - 191981 191995 9.0E-06 CGTCCCCCCCCCCCC 15 V_GATA2_03_M00349 TRANSFAC - 188395 188404 5.0E-06 ACAGATAACA 10 V_EWSR1FLI1_01_M02252 TRANSFAC + 192428 192445 6.0E-06 GGGGAGGAGGAAGGAGAG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 194995 195012 1.0E-06 GGGAGAGAGGAAGGAGGC 18 V_HNF1A_Q5_M02013 TRANSFAC - 194498 194508 4.0E-06 AGTTACTTATT 11 V_GMEB1_04_M02865 TRANSFAC + 189255 189270 8.0E-06 TGGGCCACGTGGTCTA 16 V_SP1_Q2_01_M00933 TRANSFAC + 194780 194789 4.0E-06 CCCCGCCCCC 10 V_GATA5_03_M02756 TRANSFAC - 188391 188407 3.0E-06 AAGACAGATAACAAGAG 17 V_UF1H3BETA_Q6_M01068 TRANSFAC - 194401 194414 4.0E-06 GGTGGGGAAAGGGC 14 V_GATA6_04_M02757 TRANSFAC - 188391 188407 6.0E-06 AAGACAGATAACAAGAG 17 V_SP1_Q4_01_M00932 TRANSFAC - 194778 194790 9.0E-06 CGGGGGCGGGGTG 13 V_HNF1A_01_M02162 TRANSFAC - 194471 194484 7.0E-06 GGTTAATGTTCCAC 14 V_STAT1_05_M01260 TRANSFAC + 194660 194681 5.0E-06 AGGTTCAAGGAAATGCTTGGAA 22 V_EGR3_01_M00245 TRANSFAC + 194946 194957 2.0E-06 CTGCGTGGGCGG 12 V_AP2_Q3_M00800 TRANSFAC + 192242 192257 7.0E-06 GGCCCCGGGCGGGAGG 16 V_NANOG_02_M01247 TRANSFAC - 188381 188400 2.0E-06 ATAACAAGAGAAAAACAGAA 20 V_GATA1_06_M00347 TRANSFAC - 188395 188404 5.0E-06 ACAGATAACA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.