Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

WDR93 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 56964 WD repeat domain 93 chr15 + 90229027 - 90234527 90234027 Transcription Factor Binding Sites   Download all TFBS in the WDR93 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 90237042 90237059 3.0E-06 AAGGGCAATATTTACAGT 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 90237042 90237059 1.0E-06 ACTGTAAATATTGCCCTT 18 NEUROD2_bHLH_full_dimeric_10_1 SELEX + 90236475 90236484 4.0E-06 AACATATGGT 10 NEUROD2_bHLH_full_dimeric_10_1 SELEX - 90236475 90236484 0.0E+00 ACCATATGTT 10 IRF7_IRF_DBD_dimeric_14_1 SELEX + 90229909 90229922 9.0E-06 ACAAAAGCAAAATT 14 FLI1_ETS_full_monomeric_10_1 SELEX - 90234030 90234039 7.0E-06 ACCGGAAGTC 10 ETV5_ETS_DBD_monomeric_10_1 SELEX - 90234030 90234039 7.0E-06 ACCGGAAGTC 10 ERG_ETS_full_monomeric_10_1 SELEX - 90234030 90234039 5.0E-06 ACCGGAAGTC 10 ETV3_ETS_DBD_monomeric_10_1 SELEX - 90234030 90234039 3.0E-06 ACCGGAAGTC 10 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 90237124 90237140 1.0E-06 ATAATCAGAAGTTAACA 17 ELF4_ETS_full_monomeric_12_1 SELEX - 90234030 90234041 9.0E-06 GAACCGGAAGTC 12 ELF4_ETS_full_monomeric_12_1 SELEX + 90234042 90234053 4.0E-06 AAGCCGGAAGTT 12 RFX4_RFX_DBD_dimeric_16_1 SELEX + 90234056 90234071 4.0E-06 GGTTACCAAGGCGACG 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 90234056 90234071 2.0E-06 CGTCGCCTTGGTAACC 16 EBF1_EBF_full_dimeric_14_1 SELEX + 90233927 90233940 6.0E-06 GATCCCCAGGGAAC 14 FEV_ETS_DBD_monomeric_10_1 SELEX - 90234030 90234039 6.0E-06 ACCGGAAGTC 10 ETV1_ETS_DBD_monomeric_10_1 SELEX - 90234030 90234039 7.0E-06 ACCGGAAGTC 10 ERG_ETS_full_dimeric_14_1 SELEX - 90234026 90234039 4.0E-06 ACCGGAAGTCCGCG 14 TEAD1_TEA_full_monomeric_10_1 SELEX - 90236969 90236978 2.0E-06 CACATTCCTT 10 Tcfcp2l1_MA0145.1 JASPAR + 90234035 90234048 2.0E-06 CCGGTTCAAGCCGG 14 Tcfcp2l1_MA0145.1 JASPAR - 90234035 90234048 6.0E-06 CCGGCTTGAACCGG 14 ETV2_ETS_DBD_monomeric_11_1 SELEX - 90234030 90234040 6.0E-06 AACCGGAAGTC 11 RUNX2_RUNX_DBD_monomeric_9_1 SELEX - 90234052 90234060 1.0E-05 TAACCACAA 9 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 90234056 90234071 2.0E-06 GGTTACCAAGGCGACG 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 90234056 90234071 3.0E-06 CGTCGCCTTGGTAACC 16 BHLHE23_bHLH_DBD_dimeric_10_1 SELEX + 90236475 90236484 2.0E-06 AACATATGGT 10 BHLHE23_bHLH_DBD_dimeric_10_1 SELEX - 90236475 90236484 1.0E-06 ACCATATGTT 10 ELF3_ETS_full_monomeric_13_1 SELEX + 90234042 90234054 2.0E-06 AAGCCGGAAGTTG 13 BHLHE22_bHLH_DBD_dimeric_12_1 SELEX + 90236474 90236485 0.0E+00 AAACATATGGTA 12 BHLHE22_bHLH_DBD_dimeric_12_1 SELEX - 90236474 90236485 1.0E-06 TACCATATGTTT 12 ETS1_ETS_full_monomeric_10_1 SELEX - 90234030 90234039 9.0E-06 ACCGGAAGTC 10 SP1_MA0079.2 JASPAR - 90233965 90233974 3.0E-06 CCCCTCCCCC 10 ELK4_ETS_DBD_monomeric_10_1 SELEX - 90234030 90234039 5.0E-06 ACCGGAAGTC 10 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 90237044 90237057 2.0E-06 GGGCAATATTTACA 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 90237044 90237057 4.0E-06 TGTAAATATTGCCC 14 ELK4_MA0076.1 JASPAR - 90234031 90234039 4.0E-06 ACCGGAAGT 9 OLIG1_bHLH_DBD_dimeric_10_1 SELEX + 90236475 90236484 1.0E-06 AACATATGGT 10 OLIG1_bHLH_DBD_dimeric_10_1 SELEX - 90236475 90236484 1.0E-06 ACCATATGTT 10 TFCP2_CP2_full_dimer-of-dimers_16_1 SELEX + 90234034 90234049 0.0E+00 TCCGGTTCAAGCCGGA 16 TFCP2_CP2_full_dimer-of-dimers_16_1 SELEX - 90234034 90234049 1.0E-06 TCCGGCTTGAACCGGA 16 ESR1_nuclearreceptor_DBD_dimeric_17_1 SELEX - 90237026 90237042 4.0E-06 TAGGTCAAAACAACCTT 17 RFX2_RFX_DBD_dimeric_16_1 SELEX + 90234056 90234071 2.0E-06 GGTTACCAAGGCGACG 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 90234056 90234071 2.0E-06 CGTCGCCTTGGTAACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX + 90234056 90234071 1.0E-06 GGTTACCAAGGCGACG 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 90234056 90234071 2.0E-06 CGTCGCCTTGGTAACC 16 EN1_homeodomain_full_dimeric_14_1 SELEX + 90236984 90236997 1.0E-05 TAATTGCTTAAGGA 14 ELK1_MA0028.1 JASPAR - 90234032 90234041 5.0E-06 GAACCGGAAG 10 Atoh1_bHLH_DBD_dimeric_10_1 SELEX + 90236475 90236484 1.0E-06 AACATATGGT 10 Atoh1_bHLH_DBD_dimeric_10_1 SELEX - 90236475 90236484 2.0E-06 ACCATATGTT 10 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 90237044 90237057 4.0E-06 GGGCAATATTTACA 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 90237044 90237057 3.0E-06 TGTAAATATTGCCC 14 ERF_ETS_DBD_monomeric_10_1 SELEX - 90234030 90234039 5.0E-06 ACCGGAAGTC 10 ELK1_ETS_full_monomeric_10_1 SELEX - 90234030 90234039 4.0E-06 ACCGGAAGTC 10 EHF_ETS_full_monomeric_12_1 SELEX + 90234042 90234053 2.0E-06 AAGCCGGAAGTT 12 HNF4A_MA0114.1 JASPAR + 90233871 90233883 9.0E-06 AGCCCAAAGGCCA 13 ELF5_ETS_full_monomeric_11_1 SELEX + 90234043 90234053 8.0E-06 AGCCGGAAGTT 11 NEUROG2_bHLH_full_dimeric_10_1 SELEX + 90236475 90236484 6.0E-06 AACATATGGT 10 NEUROG2_bHLH_full_dimeric_10_1 SELEX - 90236475 90236484 6.0E-06 ACCATATGTT 10 ELF3_ETS_DBD_monomeric_12_1 SELEX + 90234042 90234053 4.0E-06 AAGCCGGAAGTT 12 Elk3_ETS_DBD_monomeric_10_1 SELEX - 90234030 90234039 4.0E-06 ACCGGAAGTC 10 TEAD4_TEA_DBD_monomeric_10_1 SELEX - 90236969 90236978 2.0E-06 CACATTCCTT 10 FOXB1_forkhead_full_monomeric_9_1 SELEX - 90237049 90237057 5.0E-06 TGTAAATAT 9 ETV6_ETS_full_dimeric_15_1 SELEX - 90234030 90234044 5.0E-06 CTTGAACCGGAAGTC 15 FLI1_ETS_full_monomeric_14_1 SELEX - 90234026 90234039 5.0E-06 ACCGGAAGTCCGCG 14 BHLHA15_bHLH_DBD_dimeric_10_1 SELEX + 90236475 90236484 1.0E-06 AACATATGGT 10 BHLHA15_bHLH_DBD_dimeric_10_1 SELEX - 90236475 90236484 1.0E-06 ACCATATGTT 10 FOXB1_forkhead_DBD_monomeric_11_1 SELEX - 90237049 90237059 8.0E-06 ACTGTAAATAT 11 OLIG2_bHLH_full_dimeric_10_1 SELEX + 90236475 90236484 2.0E-06 AACATATGGT 10 OLIG2_bHLH_full_dimeric_10_1 SELEX - 90236475 90236484 1.0E-06 ACCATATGTT 10 OLIG3_bHLH_DBD_dimeric_10_1 SELEX + 90236475 90236484 2.0E-06 AACATATGGT 10 OLIG3_bHLH_DBD_dimeric_10_1 SELEX - 90236475 90236484 1.0E-06 ACCATATGTT 10 V_ERG_03_M02062 TRANSFAC - 90234030 90234039 5.0E-06 ACCGGAAGTC 10 V_ERM_01_M01992 TRANSFAC - 90234030 90234039 7.0E-06 ACCGGAAGTC 10 V_SAP1A_01_M01167 TRANSFAC - 90234030 90234040 1.0E-06 AACCGGAAGTC 11 V_MSX3_01_M01341 TRANSFAC - 90236980 90236995 6.0E-06 CTTAAGCAATTATCTT 16 V_ELK1_04_M01165 TRANSFAC - 90234030 90234040 2.0E-06 AACCGGAAGTC 11 V_AML_Q6_M00769 TRANSFAC + 90234048 90234062 3.0E-06 GAAGTTGTGGTTACC 15 TAL1_TCF3_MA0091.1 JASPAR + 90236473 90236484 5.0E-06 GAAACATATGGT 12 TAL1_TCF3_MA0091.1 JASPAR - 90236475 90236486 4.0E-06 ATACCATATGTT 12 V_NF1_Q6_01_M00806 TRANSFAC + 90237191 90237207 1.0E-05 TTAAGAAATTGCCAAAC 17 V_HMGIY_Q3_M01010 TRANSFAC - 90237191 90237205 2.0E-06 TTGGCAATTTCTTAA 15 V_AML3_Q6_M01856 TRANSFAC - 90234052 90234059 1.0E-05 AACCACAA 8 V_MAFB_03_M02879 TRANSFAC - 90229917 90229931 5.0E-06 CTGTTGCAGAATTTT 15 V_CEBP_Q2_M00190 TRANSFAC + 90236984 90236997 3.0E-06 TAATTGCTTAAGGA 14 V_SP1_03_M02281 TRANSFAC - 90233965 90233974 3.0E-06 CCCCTCCCCC 10 V_HNF4A_03_M02220 TRANSFAC + 90233871 90233883 9.0E-06 AGCCCAAAGGCCA 13 V_DLX2_01_M01468 TRANSFAC + 90236980 90236995 0.0E+00 AAGATAATTGCTTAAG 16 V_HOXC6_01_M01406 TRANSFAC + 90236979 90236995 8.0E-06 TAAGATAATTGCTTAAG 17 V_PEA3_01_M01991 TRANSFAC - 90234030 90234039 8.0E-06 ACCGGAAGTC 10 V_GC_01_M00255 TRANSFAC + 90233964 90233977 1.0E-06 AGGGGGAGGGGCTG 14 V_ELK1_06_M02059 TRANSFAC - 90234030 90234039 4.0E-06 ACCGGAAGTC 10 V_HOXA6_01_M01392 TRANSFAC + 90236980 90236995 1.0E-06 AAGATAATTGCTTAAG 16 V_SAP1A_02_M01983 TRANSFAC - 90234030 90234039 7.0E-06 ACCGGAAGTC 10 V_GATA3_05_M02859 TRANSFAC - 90237011 90237032 4.0E-06 CAACCTTGATGTTATCATTCTT 22 V_AML2_01_M01759 TRANSFAC - 90234052 90234059 1.0E-05 AACCACAA 8 V_SP1_Q6_M00196 TRANSFAC + 90233964 90233976 3.0E-06 AGGGGGAGGGGCT 13 V_HOXB6_01_M01460 TRANSFAC + 90236627 90236642 9.0E-06 AAGTTGTAATGACTGT 16 V_ERG_01_M01752 TRANSFAC - 90234031 90234039 4.0E-06 ACCGGAAGT 9 V_CETS2_01_M01989 TRANSFAC - 90234030 90234039 7.0E-06 ACCGGAAGTC 10 V_GADP_01_M01258 TRANSFAC + 90234030 90234041 3.0E-06 GACTTCCGGTTC 12 V_SP1SP3_Q4_M01219 TRANSFAC - 90233992 90234002 5.0E-06 CCGCCCCCTCT 11 V_ERALPHA_01_M01801 TRANSFAC + 90237027 90237041 4.0E-06 AGGTTGTTTTGACCT 15 V_ELK1_02_M00025 TRANSFAC - 90234029 90234042 0.0E+00 TGAACCGGAAGTCC 14 V_ELK1_02_M00025 TRANSFAC + 90234041 90234054 9.0E-06 CAAGCCGGAAGTTG 14 V_CETS1P54_01_M00032 TRANSFAC - 90234030 90234039 5.0E-06 ACCGGAAGTC 10 V_HNF4_DR1_Q3_M00764 TRANSFAC - 90233871 90233883 8.0E-06 TGGCCTTTGGGCT 13 V_PEA3_02_M02066 TRANSFAC - 90234030 90234039 8.0E-06 ACCGGAAGTC 10 V_ELK1_01_M00007 TRANSFAC - 90234027 90234042 0.0E+00 TGAACCGGAAGTCCGC 16 V_IRF7_01_M00453 TRANSFAC + 90229908 90229925 7.0E-06 TACAAAAGCAAAATTCTG 18 V_SP4_Q5_M01273 TRANSFAC - 90233965 90233975 5.0E-06 GCCCCTCCCCC 11 V_ERM_02_M02069 TRANSFAC - 90234030 90234039 8.0E-06 ACCGGAAGTC 10 V_GATA1_05_M00346 TRANSFAC + 90237014 90237023 5.0E-06 AATGATAACA 10 V_LBP9_01_M01592 TRANSFAC - 90234032 90234048 7.0E-06 CCGGCTTGAACCGGAAG 17 V_FOXL1_04_M02753 TRANSFAC - 90237045 90237061 5.0E-06 TTACTGTAAATATTGCC 17 V_DELTAEF1_01_M00073 TRANSFAC + 90233802 90233812 1.0E-06 ACTCACCTGAA 11 V_CPHX_01_M01478 TRANSFAC + 90237015 90237028 2.0E-06 ATGATAACATCAAG 14 V_GATA6_01_M00462 TRANSFAC + 90237014 90237023 9.0E-06 AATGATAACA 10 V_NRF2_01_M00108 TRANSFAC - 90234030 90234039 5.0E-06 ACCGGAAGTC 10 V_ZFP281_01_M01597 TRANSFAC + 90233964 90233974 3.0E-06 AGGGGGAGGGG 11 V_CETS1_02_M02063 TRANSFAC - 90234030 90234039 8.0E-06 ACCGGAAGTC 10 V_VAX1_01_M01397 TRANSFAC + 90236980 90236995 9.0E-06 AAGATAATTGCTTAAG 16 V_NET_02_M02060 TRANSFAC - 90234030 90234039 8.0E-06 ACCGGAAGTC 10 V_DR3_Q4_M00966 TRANSFAC - 90233844 90233864 3.0E-06 CATGGACGCCTTCACCCGCTT 21 V_MOX1_01_M01443 TRANSFAC + 90236980 90236995 3.0E-06 AAGATAATTGCTTAAG 16 V_BSX_01_M01442 TRANSFAC + 90236980 90236995 0.0E+00 AAGATAATTGCTTAAG 16 V_BARHL2_01_M01446 TRANSFAC - 90236980 90236995 5.0E-06 CTTAAGCAATTATCTT 16 V_UF1H3BETA_Q6_M01068 TRANSFAC + 90233962 90233975 2.0E-06 TGAGGGGGAGGGGC 14 V_HNF4_01_M00134 TRANSFAC + 90233868 90233886 8.0E-06 TCTAGCCCAAAGGCCACGA 19 V_SP1_Q4_01_M00932 TRANSFAC + 90233964 90233976 2.0E-06 AGGGGGAGGGGCT 13 V_BARX1_01_M01340 TRANSFAC - 90236978 90236993 9.0E-06 TAAGCAATTATCTTAC 16 V_BARX1_01_M01340 TRANSFAC + 90236980 90236995 2.0E-06 AAGATAATTGCTTAAG 16 V_ELK1_03_M01163 TRANSFAC - 90234030 90234040 2.0E-06 AACCGGAAGTC 11 V_RFX1_02_M00281 TRANSFAC - 90234055 90234072 2.0E-06 GCGTCGCCTTGGTAACCA 18 V_DMRT5_01_M01150 TRANSFAC - 90229900 90229914 4.0E-06 TTTTGTAAGAGTTGC 15 V_ETV3_02_M02068 TRANSFAC - 90234030 90234039 9.0E-06 ACCGGAAGTC 10 V_HOXC8_01_M01321 TRANSFAC - 90236980 90236995 6.0E-06 CTTAAGCAATTATCTT 16 V_ER_Q6_M00191 TRANSFAC + 90237025 90237043 0.0E+00 CAAGGTTGTTTTGACCTAA 19

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.