Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

IFT46 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 56912 intraflagellar transport 46 homolog (Chlamydomonas) chr11 - 118436291 - 118441791 118436791 Transcription Factor Binding Sites   Download all TFBS in the IFT46 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Pax5_MA0014.1 JASPAR - 118435858 118435877 6.0E-06 TGAGTAAGGAAGAGGAGCCA 20 Pax5_MA0014.1 JASPAR + 118436354 118436373 9.0E-06 GAATAAAGGAAGCAGGACGG 20 En1_MA0027.1 JASPAR - 118436079 118436089 2.0E-06 AAATAGTGTTC 11 GRHL1_CP2_full_dimeric_12_1 SELEX + 118435879 118435890 4.0E-06 GAAACCAGTTTT 12 GRHL1_CP2_full_dimeric_12_1 SELEX - 118435879 118435890 4.0E-06 AAAACTGGTTTC 12 EWSR1-FLI1_MA0149.1 JASPAR + 118436353 118436370 2.0E-06 GGAATAAAGGAAGCAGGA 18 SRF_MA0083.1 JASPAR + 118435969 118435980 1.0E-05 GCCCTTATTTAG 12 LEF1_HMG_DBD_monomeric_15_1 SELEX + 118436734 118436748 8.0E-06 GAAGATCAAGGAGTC 15 RFX3_RFX_DBD_dimeric_15_1 SELEX + 118436628 118436642 6.0E-06 AGTCGCTAGGCAAAA 15 TFCP2_CP2_full_dimeric_10_1 SELEX + 118435880 118435889 3.0E-06 AAACCAGTTT 10 TFCP2_CP2_full_dimeric_10_1 SELEX - 118435880 118435889 4.0E-06 AAACTGGTTT 10 HESX1_homeodomain_DBD_dimeric_15_1 SELEX - 118436490 118436504 4.0E-06 GTAATTAGTACTCAT 15 LHX9_homeodomain_DBD_dimeric_13_1 SELEX + 118436491 118436503 5.0E-06 TGAGTACTAATTA 13 TEAD3_TEA_DBD_monomeric_8_1 SELEX + 118436973 118436980 1.0E-05 ACATTCCA 8 SRF_MADS_full_dimeric_16_1 SELEX - 118435968 118435983 7.0E-06 TTCCTAAATAAGGGCT 16 GRHL1_CP2_DBD_dimeric_10_1 SELEX + 118435880 118435889 5.0E-06 AAACCAGTTT 10 SPDEF_ETS_full_monomeric_11_1 SELEX + 118436959 118436969 1.0E-05 ACCAGGATGTA 11 TEAD1_MA0090.1 JASPAR + 118436972 118436983 2.0E-06 CACATTCCAGGG 12 V_SPI1_01_M01203 TRANSFAC - 118436468 118436484 1.0E-05 CAAAAAGGGAACTGTCT 17 V_ATF5_01_M01295 TRANSFAC + 118435863 118435873 0.0E+00 CCTCTTCCTTA 11 V_EVI1_04_M00081 TRANSFAC + 118436643 118436657 6.0E-06 AGATAAATTTTAAAA 15 V_BCL6_01_M01183 TRANSFAC - 118436641 118436656 5.0E-06 TTTAAAATTTATCTTT 16 V_BCL6_01_M01183 TRANSFAC - 118436642 118436657 9.0E-06 TTTTAAAATTTATCTT 16 V_IRF3_05_M02767 TRANSFAC - 118436471 118436484 6.0E-06 CAAAAAGGGAACTG 14 V_MAF_Q6_M00648 TRANSFAC - 118435910 118435925 7.0E-06 TGAAGGAAAGTTTGGA 16 V_ZFP281_05_M02935 TRANSFAC - 118436344 118436360 9.0E-06 TTTATTCCCCCAAGAAA 17 V_EVX1_01_M01475 TRANSFAC - 118436492 118436508 2.0E-06 ACAGGTAATTAGTACTC 17 V_EVX2_01_M01386 TRANSFAC + 118436492 118436508 6.0E-06 GAGTACTAATTACCTGT 17 V_AMEF2_Q6_M00403 TRANSFAC + 118437016 118437033 6.0E-06 AGCACTATATTACACTAT 18 V_AP1_Q6_01_M00925 TRANSFAC - 118435951 118435959 9.0E-06 ATGACTTAA 9 V_HOXA1_01_M01487 TRANSFAC + 118436492 118436507 7.0E-06 GAGTACTAATTACCTG 16 V_HNF3_Q6_M00791 TRANSFAC - 118436083 118436095 6.0E-06 ACATACAAATAGT 13 V_HNF3_Q6_M00791 TRANSFAC - 118436780 118436792 6.0E-06 ATAGACAAACAGG 13 V_HNF1_Q6_01_M01011 TRANSFAC + 118436640 118436660 2.0E-06 AAAAGATAAATTTTAAAATTC 21 V_SPIB_01_M01204 TRANSFAC - 118436468 118436484 3.0E-06 CAAAAAGGGAACTGTCT 17 V_TEF_01_M01305 TRANSFAC + 118436972 118436983 2.0E-06 CACATTCCAGGG 12 V_EMX2_01_M01461 TRANSFAC - 118436492 118436508 6.0E-06 ACAGGTAATTAGTACTC 17 V_ZFP691_04_M02937 TRANSFAC - 118436737 118436753 9.0E-06 TCCGTGACTCCTTGATC 17 V_GATA6_01_M00462 TRANSFAC + 118436641 118436650 6.0E-06 AAAGATAAAT 10 V_SREBP_Q3_M00776 TRANSFAC + 118435898 118435909 1.0E-06 ACCATCACCCCA 12 V_IRF6_03_M02770 TRANSFAC - 118436788 118436804 9.0E-06 TTTACTGAAACCATAGA 17 V_HB9_01_M01349 TRANSFAC - 118436492 118436507 7.0E-06 CAGGTAATTAGTACTC 16 V_EWSR1FLI1_01_M02252 TRANSFAC + 118436353 118436370 2.0E-06 GGAATAAAGGAAGCAGGA 18 V_EFC_Q6_M00626 TRANSFAC + 118436628 118436641 0.0E+00 AGTCGCTAGGCAAA 14 V_BARX1_01_M01340 TRANSFAC - 118436492 118436507 8.0E-06 CAGGTAATTAGTACTC 16 V_BRCA_01_M01082 TRANSFAC + 118435959 118435966 1.0E-05 TTCTGTTG 8 V_HOXB5_01_M01319 TRANSFAC - 118436492 118436507 8.0E-06 CAGGTAATTAGTACTC 16 V_HOX13_02_M01452 TRANSFAC - 118436492 118436507 8.0E-06 CAGGTAATTAGTACTC 16 V_OCT4_01_M01125 TRANSFAC + 118436085 118436099 9.0E-06 TATTTGTATGTAGAT 15 V_IPF1_06_M01438 TRANSFAC - 118436492 118436507 1.0E-06 CAGGTAATTAGTACTC 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.