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PCDHA1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 56147 protocadherin alpha 1 chr5 + 140160875 - 140166375 140165875 Transcription Factor Binding Sites   Download all TFBS in the PCDHA1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HSFY2_HSF_DBD_dimer-of-dimers_15_1 SELEX + 140165649 140165663 7.0E-06 AACGAATGGATCTAA 15 LHX6_homeodomain_full_dimeric_16_1 SELEX + 140169748 140169763 1.0E-06 TGATTACTGATGATTG 16 SOX9_HMG_full_dimeric_16_1 SELEX - 140170735 140170750 7.0E-06 AGCAATATAAACTATT 16 CEBPD_bZIP_DBD_dimeric_10_1 SELEX - 140170818 140170827 8.0E-06 ATTACACAAT 10 TEF_bZIP_DBD_dimeric_12_1 SELEX + 140170873 140170884 7.0E-06 AATTATGTAACT 3 TEF_bZIP_DBD_dimeric_12_1 SELEX - 140170873 140170884 4.0E-06 AGTTACATAATT 3 HLF_bZIP_full_dimeric_12_1 SELEX - 140170817 140170828 7.0E-06 AATTACACAATC 12 HLF_bZIP_full_dimeric_12_1 SELEX + 140170873 140170884 5.0E-06 AATTATGTAACT 3 HLF_bZIP_full_dimeric_12_1 SELEX - 140170873 140170884 3.0E-06 AGTTACATAATT 3 NFIL3_MA0025.1 JASPAR + 140170875 140170885 5.0E-06 TTATGTAACTG 1 DBP_bZIP_full_dimeric_12_1 SELEX + 140170873 140170884 4.0E-06 AATTATGTAACT 3 DBP_bZIP_full_dimeric_12_1 SELEX - 140170873 140170884 4.0E-06 AGTTACATAATT 3 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX - 140169751 140169764 6.0E-06 ACAATCATCAGTAA 14 CEBPB_bZIP_full_dimeric_10_1 SELEX - 140170818 140170827 7.0E-06 ATTACACAAT 10 Foxq1_MA0040.1 JASPAR + 140170735 140170745 3.0E-06 AATAGTTTATA 11 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX - 140169748 140169761 7.0E-06 ATCATCAGTAATCA 14 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX + 140169747 140169764 6.0E-06 TTGATTACTGATGATTGT 18 Lhx8_homeodomain_DBD_dimeric_18_1 SELEX - 140169747 140169764 1.0E-06 ACAATCATCAGTAATCAA 18 NFAT5_NFAT_DBD_dimeric_14_1 SELEX + 140169820 140169833 8.0E-06 ACGGAAATATCCTT 14 NFIL3_bZIP_DBD_dimeric_12_1 SELEX - 140170817 140170828 6.0E-06 AATTACACAATC 12 NFIL3_bZIP_DBD_dimeric_12_1 SELEX - 140170873 140170884 2.0E-06 AGTTACATAATT 3 HLF_MA0043.1 JASPAR - 140170873 140170884 5.0E-06 AGTTACATAATT 3 CEBPE_bZIP_DBD_dimeric_10_1 SELEX - 140170818 140170827 6.0E-06 ATTACACAAT 10 ELF5_MA0136.1 JASPAR + 140170825 140170833 5.0E-06 AATTTCCTT 9 IRF2_MA0051.1 JASPAR - 140170780 140170797 9.0E-06 GAAAAGTGAAATCCTCCA 18 V_OSF2_Q6_M00731 TRANSFAC + 140165695 140165702 1.0E-05 ACCACAAA 8 V_CEBP_Q3_M00770 TRANSFAC + 140169804 140169815 5.0E-06 CAGTTTTGCAAA 12 V_HMGIY_Q3_M01010 TRANSFAC - 140165659 140165673 5.0E-06 AATGTAAATTTTAGA 15 V_HMGIY_Q3_M01010 TRANSFAC + 140170820 140170834 4.0E-06 TGTGTAATTTCCTTT 15 V_COE1_Q6_M01871 TRANSFAC - 140170762 140170775 6.0E-06 TCTCAGAGGAATAT 14 V_ESE1_01_M01977 TRANSFAC + 140169819 140169828 8.0E-06 CACGGAAATA 10 V_OCT1_Q5_01_M00930 TRANSFAC + 140165663 140165673 5.0E-06 AAATTTACATT 11 V_IRF_Q6_01_M00972 TRANSFAC - 140170786 140170796 1.0E-06 AAAAGTGAAAT 11 V_IRF2_Q6_M01882 TRANSFAC - 140170783 140170798 5.0E-06 AGAAAAGTGAAATCCT 16 V_CEBP_C_M00201 TRANSFAC + 140170871 140170888 6.0E-06 AGAATTATGTAACTGCCA 5 V_NFY_Q6_01_M00775 TRANSFAC + 140170831 140170843 4.0E-06 CTTTGGCCAATGA 13 V_BRN2_01_M00145 TRANSFAC - 140169746 140169761 9.0E-06 ATCATCAGTAATCAAA 16 V_CEBPB_01_M00109 TRANSFAC + 140169769 140169782 1.0E-06 AGGTTGAGAAATAT 14 V_CETS1P54_02_M00074 TRANSFAC - 140170824 140170836 1.0E-06 CCAAAGGAAATTA 13 V_FOXA2_02_M02853 TRANSFAC - 140170793 140170807 5.0E-06 CAAAATAACAGAAAA 15 V_HOXA6_01_M01392 TRANSFAC - 140170818 140170833 9.0E-06 AAGGAAATTACACAAT 16 V_DBP_Q6_01_M01872 TRANSFAC + 140170875 140170882 5.0E-06 TTATGTAA 1 V_E4BP4_01_M00045 TRANSFAC + 140170873 140170884 1.0E-06 AATTATGTAACT 3 V_IRF2_01_M00063 TRANSFAC - 140170785 140170797 1.0E-06 GAAAAGTGAAATC 13 V_CEBPB_02_M00117 TRANSFAC - 140169804 140169817 7.0E-06 GTTTTGCAAAACTG 14 V_CDX2_Q5_M00729 TRANSFAC + 140169792 140169805 9.0E-06 CACGTTTTATAGCA 14 V_PAX2_01_M00098 TRANSFAC + 140169746 140169764 9.0E-06 TTTGATTACTGATGATTGT 19 V_PEBP_Q6_M00984 TRANSFAC - 140170693 140170707 3.0E-06 ACTGACCACAAGTCT 15 V_HFH1_01_M00129 TRANSFAC + 140170735 140170746 1.0E-06 AATAGTTTATAT 12 V_POU6F1_01_M00465 TRANSFAC + 140170734 140170744 9.0E-06 AAATAGTTTAT 11 V_OCT_Q6_M00795 TRANSFAC + 140165663 140165673 9.0E-06 AAATTTACATT 11 V_GATA4_Q3_M00632 TRANSFAC - 140170794 140170805 1.0E-05 AAATAACAGAAA 12 V_VBP_01_M00228 TRANSFAC - 140170874 140170883 0.0E+00 GTTACATAAT 2 V_EHF_03_M02052 TRANSFAC + 140169819 140169828 9.0E-06 CACGGAAATA 10 V_CAAT_01_M00254 TRANSFAC + 140170832 140170843 3.0E-06 TTTGGCCAATGA 12 V_POU5F1_01_M01307 TRANSFAC + 140170712 140170721 9.0E-06 GATGCAAATA 10 V_CEBPA_01_M00116 TRANSFAC - 140170816 140170829 8.0E-06 AAATTACACAATCG 14 V_CAAT_C_M00200 TRANSFAC - 140165784 140165808 1.0E-06 TCCAATCATTTATCTCTTTACCGTT 25 V_FOXL1_02_M02857 TRANSFAC - 140170796 140170811 6.0E-06 ACCTCAAAATAACAGA 16 V_HDX_01_M01333 TRANSFAC + 140165638 140165654 5.0E-06 TTTTGAAAATCAACGAA 17 V_PARP_Q3_M01211 TRANSFAC + 140170730 140170739 2.0E-06 TGAGAAATAG 10 V_MTATA_B_M00320 TRANSFAC - 140169789 140169805 2.0E-06 TGCTATAAAACGTGCTG 17 V_ESE1_02_M02055 TRANSFAC + 140169819 140169828 7.0E-06 CACGGAAATA 10 V_OCT1_07_M00248 TRANSFAC - 140165664 140165675 7.0E-06 CCAATGTAAATT 12 V_IRF1_Q6_01_M01881 TRANSFAC + 140170784 140170797 2.0E-06 GGATTTCACTTTTC 14 V_HLF_01_M00260 TRANSFAC - 140170818 140170827 3.0E-06 ATTACACAAT 10 V_HLF_01_M00260 TRANSFAC - 140170874 140170883 1.0E-06 GTTACATAAT 2 V_YY1_01_M00059 TRANSFAC + 140165749 140165765 7.0E-06 AAGCTCCATTTTGTCAC 17 V_IRF1_01_M00062 TRANSFAC - 140170785 140170797 5.0E-06 GAAAAGTGAAATC 13 V_ELF5_04_M02241 TRANSFAC + 140170825 140170833 5.0E-06 AATTTCCTT 9 V_CEBP_Q2_01_M00912 TRANSFAC - 140169758 140169769 5.0E-06 TTTACACAATCA 12 V_CEBP_Q2_01_M00912 TRANSFAC - 140170872 140170883 8.0E-06 GTTACATAATTC 4 V_CEBPE_01_M01772 TRANSFAC + 140170818 140170827 4.0E-06 ATTGTGTAAT 10 V_CEBPE_01_M01772 TRANSFAC - 140170818 140170827 7.0E-06 ATTACACAAT 10 V_CEBPG_Q6_01_M01869 TRANSFAC - 140170817 140170828 8.0E-06 AATTACACAATC 12 V_CEBPA_Q6_M01866 TRANSFAC + 140169804 140169816 4.0E-06 CAGTTTTGCAAAA 13 V_CEBPA_Q6_M01866 TRANSFAC - 140169807 140169819 4.0E-06 GGGTTTTGCAAAA 13 V_ESE1_Q3_M01214 TRANSFAC + 140169819 140169828 7.0E-06 CACGGAAATA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.