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PCDHA4 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 56144 protocadherin alpha 4 chr5 + 140181671 - 140187171 140186671 Transcription Factor Binding Sites   Download all TFBS in the PCDHA4 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 140187226 140187244 0.0E+00 TTTCCACTAGAGGGCGCCT 19 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 140186500 140186512 4.0E-06 ATAAATAAAACCA 13 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 140186497 140186508 8.0E-06 ATAATAAATAAA 12 FOXL1_forkhead_full_dimeric_13_1 SELEX + 140186495 140186507 7.0E-06 AAATAATAAATAA 13 POU4F3_POU_DBD_monomeric_16_1 SELEX + 140186493 140186508 9.0E-06 TGAAATAATAAATAAA 16 RELA_MA0107.1 JASPAR + 140186535 140186544 9.0E-06 GGGGGTTTCC 10 ONECUT2_CUT_DBD_monomeric_14_1 SELEX + 140186495 140186508 9.0E-06 AAATAATAAATAAA 14 CTCF_C2H2_full_monomeric_17_1 SELEX - 140187227 140187243 0.0E+00 GGCGCCCTCTAGTGGAA 17 HESX1_homeodomain_DBD_dimeric_15_1 SELEX - 140186545 140186559 1.0E-05 GTAAGTAGCAATTGT 15 ELF1_ETS_full_monomeric_12_1 SELEX - 140186553 140186564 7.0E-06 AAACCGTAAGTA 12 TEAD1_TEA_full_dimeric_17_1 SELEX + 140186623 140186639 7.0E-06 AAATTCCTTCTATTCTT 17 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 140186498 140186510 9.0E-06 TAATAAATAAAAC 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 140186500 140186512 4.0E-06 ATAAATAAAACCA 13 ONECUT3_CUT_DBD_monomeric_14_1 SELEX + 140186495 140186508 2.0E-06 AAATAATAAATAAA 14 V_FOXP1_01_M00987 TRANSFAC - 140186494 140186513 7.0E-06 TTGGTTTTATTTATTATTTC 20 V_SPI1_01_M01203 TRANSFAC + 140186605 140186621 8.0E-06 AGAAGGAGGAAGAAGGG 17 V_TST1_02_M01316 TRANSFAC + 140186491 140186507 9.0E-06 ACTGAAATAATAAATAA 17 V_DBX1_01_M01483 TRANSFAC + 140186494 140186510 2.0E-06 GAAATAATAAATAAAAC 17 V_FREAC7_01_M00293 TRANSFAC + 140186495 140186510 2.0E-06 AAATAATAAATAAAAC 16 V_ELK1_04_M01165 TRANSFAC - 140186553 140186563 9.0E-06 AACCGTAAGTA 11 V_OSF2_Q6_M00731 TRANSFAC + 140186588 140186595 1.0E-05 ACCACAAA 8 V_XFD1_01_M00267 TRANSFAC + 140186497 140186510 2.0E-06 ATAATAAATAAAAC 14 V_FOXA2_04_M02749 TRANSFAC + 140186495 140186511 1.0E-06 AAATAATAAATAAAACC 17 V_EVI1_04_M00081 TRANSFAC + 140186493 140186507 6.0E-06 TGAAATAATAAATAA 15 V_BCL6_01_M01183 TRANSFAC - 140186502 140186517 9.0E-06 CTACTTGGTTTTATTT 16 V_MMEF2_Q6_M00405 TRANSFAC + 140186496 140186511 9.0E-06 AATAATAAATAAAACC 16 V_HOXA13_02_M01297 TRANSFAC + 140186502 140186510 1.0E-06 AAATAAAAC 9 V_RELBP52_01_M01239 TRANSFAC + 140186535 140186544 3.0E-06 GGGGGTTTCC 10 V_HNF3_Q6_01_M01012 TRANSFAC - 140186494 140186511 5.0E-06 GGTTTTATTTATTATTTC 18 V_GABPA_04_M02858 TRANSFAC - 140186605 140186620 7.0E-06 CCTTCTTCCTCCTTCT 16 V_FOXJ1_03_M02750 TRANSFAC + 140186497 140186512 5.0E-06 ATAATAAATAAAACCA 16 V_HOXC6_01_M01406 TRANSFAC + 140186493 140186509 2.0E-06 TGAAATAATAAATAAAA 17 V_PU1_Q4_M01172 TRANSFAC - 140186606 140186624 4.0E-06 TTTCCCTTCTTCCTCCTTC 19 V_SOX21_03_M02803 TRANSFAC + 140186493 140186508 6.0E-06 TGAAATAATAAATAAA 16 V_SOX21_03_M02803 TRANSFAC - 140186493 140186508 8.0E-06 TTTATTTATTATTTCA 16 V_CDX_Q5_M00991 TRANSFAC + 140186487 140186504 5.0E-06 AACGACTGAAATAATAAA 18 V_NKX62_Q2_M00489 TRANSFAC + 140186497 140186508 7.0E-06 ATAATAAATAAA 12 V_FOXA2_02_M02853 TRANSFAC + 140186493 140186507 5.0E-06 TGAAATAATAAATAA 15 V_DBX2_01_M01360 TRANSFAC - 140186494 140186509 2.0E-06 TTTTATTTATTATTTC 16 V_ZFP105_03_M02827 TRANSFAC + 140186496 140186510 7.0E-06 AATAATAAATAAAAC 15 V_IRF4_04_M02872 TRANSFAC + 140187215 140187229 5.0E-06 TTGACTCTCGGTTTC 15 V_AMEF2_Q6_M00403 TRANSFAC + 140186496 140186513 1.0E-06 AATAATAAATAAAACCAA 18 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 140186496 140186506 9.0E-06 TATTTATTATT 11 V_PIT1_01_M01465 TRANSFAC - 140186490 140186506 7.0E-06 TATTTATTATTTCAGTC 17 V_PIT1_01_M01465 TRANSFAC - 140186494 140186510 6.0E-06 GTTTTATTTATTATTTC 17 V_PIT1_01_M01465 TRANSFAC + 140186495 140186511 5.0E-06 AAATAATAAATAAAACC 17 V_MEF2_Q6_01_M00941 TRANSFAC - 140186500 140186511 6.0E-06 GGTTTTATTTAT 12 V_NCX_02_M01420 TRANSFAC + 140186494 140186510 6.0E-06 GAAATAATAAATAAAAC 17 V_HB24_01_M01399 TRANSFAC + 140186495 140186509 2.0E-06 AAATAATAAATAAAA 15 V_ARID3A_04_M02735 TRANSFAC - 140186495 140186511 5.0E-06 GGTTTTATTTATTATTT 17 V_TBP_06_M02814 TRANSFAC - 140186495 140186510 1.0E-06 GTTTTATTTATTATTT 16 V_CTCF_02_M01259 TRANSFAC + 140187223 140187242 0.0E+00 CGGTTTCCACTAGAGGGCGC 20 V_CTCF_01_M01200 TRANSFAC + 140187225 140187244 1.0E-06 GTTTCCACTAGAGGGCGCCT 20 V_GATA4_Q3_M00632 TRANSFAC + 140187252 140187263 2.0E-06 AGATATCGGGGA 12 V_MTF1_06_M02882 TRANSFAC + 140186495 140186508 0.0E+00 AAATAATAAATAAA 14 V_BRN4_01_M01473 TRANSFAC - 140186490 140186506 1.0E-05 TATTTATTATTTCAGTC 17 V_BRN4_01_M01473 TRANSFAC + 140186491 140186507 9.0E-06 ACTGAAATAATAAATAA 17 V_BRN4_01_M01473 TRANSFAC - 140186494 140186510 6.0E-06 GTTTTATTTATTATTTC 17 V_BRN4_01_M01473 TRANSFAC + 140186495 140186511 7.0E-06 AAATAATAAATAAAACC 17 V_HOXB8_01_M01451 TRANSFAC + 140186493 140186508 3.0E-06 TGAAATAATAAATAAA 16 V_OSR2_04_M02889 TRANSFAC + 140186547 140186562 3.0E-06 AATTGCTACTTACGGT 16 V_FOXL1_04_M02753 TRANSFAC + 140186495 140186511 1.0E-06 AAATAATAAATAAAACC 17 V_IRF6_04_M02874 TRANSFAC + 140187215 140187229 3.0E-06 TTGACTCTCGGTTTC 15 V_FOX_Q2_M00809 TRANSFAC - 140186497 140186509 1.0E-06 TTTTATTTATTAT 13 V_OSR1_04_M02888 TRANSFAC + 140186547 140186562 9.0E-06 AATTGCTACTTACGGT 16 V_SOX8_03_M02808 TRANSFAC - 140186491 140186507 6.0E-06 TTATTTATTATTTCAGT 17 V_HFH3_01_M00289 TRANSFAC - 140186497 140186509 9.0E-06 TTTTATTTATTAT 13 V_HOXD8_01_M01432 TRANSFAC + 140186494 140186510 3.0E-06 GAAATAATAAATAAAAC 17 V_HNF3B_Q6_M02014 TRANSFAC - 140186499 140186507 1.0E-05 TTATTTATT 9 V_BRN3C_01_M01408 TRANSFAC - 140186494 140186509 2.0E-06 TTTTATTTATTATTTC 16 V_HOXA10_01_M01464 TRANSFAC + 140186494 140186509 4.0E-06 GAAATAATAAATAAAA 16 V_ELK1_03_M01163 TRANSFAC - 140186553 140186563 4.0E-06 AACCGTAAGTA 11 V_GLIS2_04_M02863 TRANSFAC + 140186496 140186509 7.0E-06 AATAATAAATAAAA 14 V_FOXK1_03_M02752 TRANSFAC + 140186495 140186511 3.0E-06 AAATAATAAATAAAACC 17 V_SMAD1_01_M01590 TRANSFAC + 140187176 140187187 5.0E-06 CAACACAAAAGA 12

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.