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PCDHGA2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 56113 protocadherin gamma subfamily A, 2 chr5 + 140713353 - 140718853 140718353 Transcription Factor Binding Sites   Download all TFBS in the PCDHGA2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 140714170 140714187 5.0E-06 TAAATAAATAAATATAAT 18 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 140723291 140723307 4.0E-06 TTATTATTTTTGAATTA 17 POU3F3_POU_DBD_monomeric_12_1 SELEX + 140714169 140714180 2.0E-06 TTAAATAAATAA 12 Arx_homeodomain_DBD_dimeric_13_1 SELEX + 140714169 140714181 4.0E-06 TTAAATAAATAAA 13 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 140718209 140718225 0.0E+00 GTCAACAAAGGCAAACA 17 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 140714170 140714181 0.0E+00 TAAATAAATAAA 12 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 140718206 140718217 1.0E-06 AAAGTCAACAAA 12 FOXL1_forkhead_full_dimeric_13_1 SELEX + 140714168 140714180 1.0E-06 GTTAAATAAATAA 13 FOXL1_forkhead_full_dimeric_13_1 SELEX + 140718218 140718230 6.0E-06 GGCAAACAAACAA 13 POU3F4_POU_DBD_monomeric_11_1 SELEX + 140714170 140714180 7.0E-06 TAAATAAATAA 11 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 140714170 140714180 1.0E-06 TAAATAAATAA 11 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 140718206 140718216 8.0E-06 AAAGTCAACAA 11 GLI2_C2H2_DBD_monomeric_14_1 SELEX + 140718293 140718306 8.0E-06 GACCACCTAAGGAG 14 GATA5_GATA_DBD_monomeric_8_1 SELEX - 140723256 140723263 7.0E-06 AGATAAGA 8 GATA4_GATA_DBD_monomeric_8_1 SELEX - 140723256 140723263 7.0E-06 AGATAAGA 8 Klf4_MA0039.2 JASPAR - 140714158 140714167 3.0E-06 AGGGTGTGGC 10 POU4F3_POU_DBD_monomeric_16_1 SELEX + 140714169 140714184 8.0E-06 TTAAATAAATAAATAT 16 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 140714169 140714179 4.0E-06 TTAAATAAATA 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 140718219 140718229 1.0E-06 GCAAACAAACA 11 FOXI1_MA0042.1 JASPAR - 140718221 140718232 1.0E-06 TCTTGTTTGTTT 12 znf143_MA0088.1 JASPAR - 140718491 140718510 2.0E-06 CAACTTCCAGCATCCAGTGC 20 Alx4_homeodomain_DBD_dimeric_13_1 SELEX + 140714169 140714181 7.0E-06 TTAAATAAATAAA 13 YY2_C2H2_full_monomeric_11_1 SELEX - 140718536 140718546 8.0E-06 GCCGCCATTTC 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 140714169 140714179 1.0E-06 TTAAATAAATA 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 140718219 140718229 3.0E-06 GCAAACAAACA 11 Gata1_MA0035.2 JASPAR - 140723255 140723265 2.0E-06 AGAGATAAGAG 11 GATA3_GATA_full_monomeric_8_1 SELEX - 140723256 140723263 7.0E-06 AGATAAGA 8 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 140723290 140723307 9.0E-06 ATAATTCAAAAATAATAA 18 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 140714157 140714171 9.0E-06 AGCCACACCCTGTTA 15 POU3F1_POU_DBD_monomeric_12_2 SELEX + 140714169 140714180 2.0E-06 TTAAATAAATAA 12 MYBL1_MYB_DBD_monomeric_11_1 SELEX - 140723327 140723337 1.0E-05 CTAACCGTTTA 11 POU3F3_POU_DBD_dimeric_12_1 SELEX + 140714169 140714180 8.0E-06 TTAAATAAATAA 12 POU3F3_POU_DBD_dimeric_12_1 SELEX + 140723297 140723308 3.0E-06 AAAAATAATAAT 12 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 140723290 140723307 6.0E-06 ATAATTCAAAAATAATAA 18 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 140718217 140718229 3.0E-06 AGGCAAACAAACA 13 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 140714170 140714180 3.0E-06 TAAATAAATAA 11 POU4F1_POU_DBD_monomeric_14_1 SELEX + 140714169 140714182 8.0E-06 TTAAATAAATAAAT 14 V_MTF1_01_M01242 TRANSFAC - 140718546 140718565 5.0E-06 GTGTGGCAACTTTTGCAGAG 20 V_TST1_02_M01316 TRANSFAC + 140714167 140714183 6.0E-06 TGTTAAATAAATAAATA 17 V_DBX1_01_M01483 TRANSFAC + 140714167 140714183 5.0E-06 TGTTAAATAAATAAATA 17 V_DBX1_01_M01483 TRANSFAC - 140714167 140714183 1.0E-06 TATTTATTTATTTAACA 17 V_DBX1_01_M01483 TRANSFAC + 140714170 140714186 1.0E-06 TAAATAAATAAATATAA 17 V_DBX1_01_M01483 TRANSFAC + 140723291 140723307 1.0E-06 TAATTCAAAAATAATAA 17 V_DBX1_01_M01483 TRANSFAC - 140723291 140723307 4.0E-06 TTATTATTTTTGAATTA 17 V_FREAC7_01_M00293 TRANSFAC + 140714168 140714183 1.0E-06 GTTAAATAAATAAATA 16 V_SRY_07_M02813 TRANSFAC + 140723297 140723312 3.0E-06 AAAAATAATAATGTGT 16 V_SRY_07_M02813 TRANSFAC - 140723297 140723312 7.0E-06 ACACATTATTATTTTT 16 V_GATA2_02_M00348 TRANSFAC - 140723256 140723265 0.0E+00 AGAGATAAGA 10 V_FOXA2_04_M02749 TRANSFAC + 140714168 140714184 2.0E-06 GTTAAATAAATAAATAT 17 V_FOXA2_04_M02749 TRANSFAC + 140718204 140718220 2.0E-06 TGAAAGTCAACAAAGGC 17 V_FOXA2_04_M02749 TRANSFAC + 140718214 140718230 7.0E-06 CAAAGGCAAACAAACAA 17 V_PAX4_03_M00378 TRANSFAC - 140718357 140718368 3.0E-06 AACCTCCACCCC 12 V_FOXD3_01_M00130 TRANSFAC - 140718221 140718232 9.0E-06 TCTTGTTTGTTT 12 V_SP1_Q6_01_M00931 TRANSFAC + 140714047 140714056 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 140714052 140714061 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC + 140714057 140714066 4.0E-06 GGGGCGGGGC 10 V_GLI1_01_M01702 TRANSFAC + 140718293 140718303 1.0E-05 GACCACCTAAG 11 V_HNF3_Q6_01_M01012 TRANSFAC - 140714167 140714184 1.0E-06 ATATTTATTTATTTAACA 18 V_HNF3_Q6_01_M01012 TRANSFAC - 140718213 140718230 0.0E+00 TTGTTTGTTTGCCTTTGT 18 V_FOXJ1_03_M02750 TRANSFAC + 140714170 140714185 2.0E-06 TAAATAAATAAATATA 16 V_FOXJ1_03_M02750 TRANSFAC + 140718206 140718221 6.0E-06 AAAGTCAACAAAGGCA 16 V_FOXJ1_03_M02750 TRANSFAC + 140718216 140718231 9.0E-06 AAGGCAAACAAACAAG 16 V_SPZ1_01_M00446 TRANSFAC + 140718528 140718542 7.0E-06 ACAGGAGGGAAATGG 15 V_HFH4_01_M00742 TRANSFAC - 140714170 140714182 1.0E-06 ATTTATTTATTTA 13 V_GKLF_02_M01588 TRANSFAC + 140714158 140714169 8.0E-06 GCCACACCCTGT 12 V_LHX3_01_M01471 TRANSFAC + 140714165 140714181 1.0E-05 CCTGTTAAATAAATAAA 17 V_SP1_02_M01303 TRANSFAC + 140714037 140714047 3.0E-06 GGGGCGGGGAG 11 V_AIRE_02_M01000 TRANSFAC - 140718211 140718235 5.0E-06 ACTTCTTGTTTGTTTGCCTTTGTTG 25 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC + 140718348 140718363 2.0E-06 CAGCACAAGGGGGTGG 16 V_SOX21_03_M02803 TRANSFAC + 140723294 140723309 2.0E-06 TTCAAAAATAATAATG 16 V_SOX21_03_M02803 TRANSFAC - 140723294 140723309 4.0E-06 CATTATTATTTTTGAA 16 V_SOX21_03_M02803 TRANSFAC + 140723297 140723312 4.0E-06 AAAAATAATAATGTGT 16 V_SOX21_03_M02803 TRANSFAC - 140723297 140723312 2.0E-06 ACACATTATTATTTTT 16 V_CDX_Q5_M00991 TRANSFAC + 140714164 140714181 4.0E-06 CCCTGTTAAATAAATAAA 18 V_TAL1_GATA1_01_M02243 TRANSFAC - 140723257 140723274 1.0E-06 CTTCTTGTCAGAGATAAG 18 V_RPC155_01_M01798 TRANSFAC + 140713981 140713996 0.0E+00 CCTGGAGTTCAAGACC 16 V_ELF4_04_M02850 TRANSFAC + 140714167 140714183 6.0E-06 TGTTAAATAAATAAATA 17 V_ELF4_04_M02850 TRANSFAC + 140714168 140714184 0.0E+00 GTTAAATAAATAAATAT 17 V_ELF4_04_M02850 TRANSFAC + 140723293 140723309 1.0E-05 ATTCAAAAATAATAATG 17 V_GLI3_02_M01704 TRANSFAC + 140718293 140718303 4.0E-06 GACCACCTAAG 11 V_SOX13_03_M02797 TRANSFAC + 140723295 140723310 8.0E-06 TCAAAAATAATAATGT 16 V_GC_01_M00255 TRANSFAC + 140714045 140714058 9.0E-06 GAGGGGCGGGGCGG 14 V_FOXA2_02_M02853 TRANSFAC + 140723297 140723311 7.0E-06 AAAAATAATAATGTG 15 V_POU3F2_01_M00463 TRANSFAC + 140714169 140714182 9.0E-06 TTAAATAAATAAAT 14 V_LMX1_01_M01409 TRANSFAC + 140714165 140714181 9.0E-06 CCTGTTAAATAAATAAA 17 V_ZFP105_03_M02827 TRANSFAC + 140718222 140718236 3.0E-06 AACAAACAAGAAGTA 15 V_ZFP105_03_M02827 TRANSFAC + 140723293 140723307 8.0E-06 ATTCAAAAATAATAA 15 V_HNF3G_Q4_M02015 TRANSFAC - 140718222 140718229 7.0E-06 TGTTTGTT 8 V_SP1_Q6_M00196 TRANSFAC + 140714045 140714057 2.0E-06 GAGGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC + 140714050 140714062 7.0E-06 GCGGGGCGGGGCG 13 V_MAZ_Q6_01_M02023 TRANSFAC + 140714036 140714049 8.0E-06 CGGGGCGGGGAGGG 14 V_HNF3_Q6_M00791 TRANSFAC + 140714169 140714181 1.0E-06 TTAAATAAATAAA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 140714169 140714179 2.0E-06 TATTTATTTAA 11 V_HNF1_Q6_01_M01011 TRANSFAC + 140718222 140718242 5.0E-06 AACAAACAAGAAGTAACTTAG 21 V_HOX13_01_M00023 TRANSFAC - 140723292 140723321 8.0E-06 TCCTCTCAGACACATTATTATTTTTGAATT 30 V_OCT1_04_M00138 TRANSFAC + 140714169 140714191 1.0E-06 TTAAATAAATAAATATAATAATA 23 V_OCT1_04_M00138 TRANSFAC - 140714170 140714192 1.0E-06 TTATTATTATATTTATTTATTTA 23 V_OCT1_04_M00138 TRANSFAC + 140723285 140723307 2.0E-06 CTTGGATAATTCAAAAATAATAA 23 V_REX1_03_M01744 TRANSFAC + 140718536 140718547 7.0E-06 GAAATGGCGGCT 12 Tal1_Gata1_MA0140.1 JASPAR - 140723257 140723274 1.0E-06 CTTCTTGTCAGAGATAAG 18 V_PIT1_01_M01465 TRANSFAC + 140714167 140714183 5.0E-06 TGTTAAATAAATAAATA 17 V_GATA1_09_M02254 TRANSFAC - 140723255 140723265 2.0E-06 AGAGATAAGAG 11 V_XFD2_01_M00268 TRANSFAC + 140714170 140714183 2.0E-06 TAAATAAATAAATA 14 V_HFH1_01_M00129 TRANSFAC - 140718221 140718232 9.0E-06 TCTTGTTTGTTT 12 V_NCX_02_M01420 TRANSFAC + 140714170 140714186 2.0E-06 TAAATAAATAAATATAA 17 V_STAF_02_M00264 TRANSFAC - 140718489 140718509 2.0E-06 AACTTCCAGCATCCAGTGCGG 21 V_TBP_06_M02814 TRANSFAC + 140714168 140714183 0.0E+00 GTTAAATAAATAAATA 16 V_TBP_06_M02814 TRANSFAC + 140714170 140714185 7.0E-06 TAAATAAATAAATATA 16 V_TBP_06_M02814 TRANSFAC - 140714170 140714185 8.0E-06 TATATTTATTTATTTA 16 V_SP4_Q5_M01273 TRANSFAC - 140714041 140714051 7.0E-06 GCCCCTCCCCG 11 V_SP4_Q5_M01273 TRANSFAC - 140714046 140714056 8.0E-06 GCCCCGCCCCT 11 V_SP4_Q5_M01273 TRANSFAC - 140714051 140714061 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC - 140714056 140714066 2.0E-06 GCCCCGCCCCG 11 V_GCNF_01_M00526 TRANSFAC + 140713982 140713999 4.0E-06 CTGGAGTTCAAGACCAGC 18 V_HFH8_01_M00294 TRANSFAC - 140714170 140714182 1.0E-06 ATTTATTTATTTA 13 V_GLI2_01_M01703 TRANSFAC + 140718293 140718303 3.0E-06 GACCACCTAAG 11 V_BRN4_01_M01473 TRANSFAC + 140714167 140714183 5.0E-06 TGTTAAATAAATAAATA 17 V_MYOD_Q6_01_M00929 TRANSFAC + 140718248 140718265 6.0E-06 CCTGAGCAGGTGCAGAAA 18 V_TCFE2A_03_M02823 TRANSFAC + 140718249 140718265 2.0E-06 CTGAGCAGGTGCAGAAA 17 V_SIRT6_01_M01797 TRANSFAC - 140723256 140723263 7.0E-06 AGATAAGA 8 V_FOXL1_04_M02753 TRANSFAC + 140714168 140714184 1.0E-06 GTTAAATAAATAAATAT 17 V_FOXL1_04_M02753 TRANSFAC + 140718204 140718220 4.0E-06 TGAAAGTCAACAAAGGC 17 V_GATA3_02_M00350 TRANSFAC - 140723256 140723265 1.0E-06 AGAGATAAGA 10 V_BDP1_01_M01796 TRANSFAC - 140713985 140713996 2.0E-06 GGTCTTGAACTC 12 V_FOXO3_01_M00477 TRANSFAC - 140718206 140718219 7.0E-06 CCTTTGTTGACTTT 14 V_FOX_Q2_M00809 TRANSFAC - 140718206 140718218 6.0E-06 CTTTGTTGACTTT 13 V_GATA2_03_M00349 TRANSFAC - 140723256 140723265 0.0E+00 AGAGATAAGA 10 V_SRF_06_M02916 TRANSFAC + 140714168 140714184 4.0E-06 GTTAAATAAATAAATAT 17 V_HFH3_01_M00289 TRANSFAC - 140714170 140714182 0.0E+00 ATTTATTTATTTA 13 V_HFH3_01_M00289 TRANSFAC - 140718220 140718232 3.0E-06 TCTTGTTTGTTTG 13 V_FOXJ2_01_M00422 TRANSFAC + 140714167 140714184 0.0E+00 TGTTAAATAAATAAATAT 18 V_FOXJ2_01_M00422 TRANSFAC + 140718213 140718230 4.0E-06 ACAAAGGCAAACAAACAA 18 V_SOX4_01_M01308 TRANSFAC + 140718212 140718219 1.0E-05 AACAAAGG 8 V_EKLF_Q5_M01874 TRANSFAC + 140714159 140714168 2.0E-06 CCACACCCTG 10 V_HNF3B_Q6_M02014 TRANSFAC - 140718222 140718230 1.0E-05 TTGTTTGTT 9 V_SP1_Q2_01_M00933 TRANSFAC - 140714046 140714055 7.0E-06 CCCCGCCCCT 10 V_MAFK_04_M02880 TRANSFAC + 140718516 140718530 3.0E-06 GAGAAAATTGCGACA 15 V_ZFP128_04_M02932 TRANSFAC - 140714168 140714181 7.0E-06 TTTATTTATTTAAC 14 V_SP1_Q4_01_M00932 TRANSFAC + 140714045 140714057 4.0E-06 GAGGGGCGGGGCG 13 V_EHF_07_M02849 TRANSFAC + 140723272 140723287 6.0E-06 AAGGATTTCAGATCTT 16 V_FOXK1_03_M02752 TRANSFAC + 140714168 140714184 6.0E-06 GTTAAATAAATAAATAT 17 V_FOXK1_03_M02752 TRANSFAC + 140718204 140718220 3.0E-06 TGAAAGTCAACAAAGGC 17 V_SOX14_03_M02798 TRANSFAC + 140723294 140723309 4.0E-06 TTCAAAAATAATAATG 16 V_SOX14_03_M02798 TRANSFAC + 140723297 140723312 3.0E-06 AAAAATAATAATGTGT 16 V_SOX14_03_M02798 TRANSFAC - 140723297 140723312 6.0E-06 ACACATTATTATTTTT 16 V_GATA1_06_M00347 TRANSFAC - 140723256 140723265 3.0E-06 AGAGATAAGA 10

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