Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MESP1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS Motifs 55897 mesoderm posterior 1 homolog (mouse) chr15 - 90294040 - 90299540 90294540 MESP1_bHLH_DBD_dimeric_10_1 Transcription Factor Binding Sites   Download all TFBS in the MESP1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX4_HMG_DBD_dimeric_16_1 SELEX - 90296591 90296606 7.0E-06 GAACATTTGAAGAGTT 16 FOXG1_forkhead_DBD_dimeric_17_1 SELEX - 90298231 90298247 8.0E-06 GAAAACAGAGGAAGACA 17 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 90295322 90295333 9.0E-06 ACTAAGAATAGA 12 GRHL1_CP2_full_dimeric_12_1 SELEX + 90295229 90295240 3.0E-06 ATAACAGGTTTT 12 GRHL1_CP2_full_dimeric_12_1 SELEX - 90295229 90295240 3.0E-06 AAAACCTGTTAT 12 GATA5_GATA_DBD_monomeric_8_1 SELEX + 90296672 90296679 7.0E-06 AGATAAGA 8 GATA4_GATA_DBD_monomeric_8_1 SELEX + 90296672 90296679 7.0E-06 AGATAAGA 8 OTX2_homeodomain_DBD_dimeric_15_1 SELEX - 90295923 90295937 3.0E-06 CATAATCCTCTTTAA 15 MEF2B_MADS_full_dimeric_12_1 SELEX + 90295322 90295333 4.0E-06 ACTAAGAATAGA 12 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 90295176 90295187 7.0E-06 TGACAGCTGTGG 12 GRHL1_CP2_DBD_dimer-of-dimers_17_1 SELEX + 90295222 90295238 0.0E+00 GACAGGTATAACAGGTT 17 GRHL1_CP2_DBD_dimer-of-dimers_17_1 SELEX - 90295222 90295238 1.0E-06 AACCTGTTATACCTGTC 17 FOXB1_forkhead_DBD_putative-multimer_14_1 SELEX + 90295260 90295273 9.0E-06 AAATGACGCAGCAA 14 Otx1_homeodomain_DBD_dimeric_15_1 SELEX - 90295923 90295937 6.0E-06 CATAATCCTCTTTAA 15 YY2_C2H2_full_monomeric_11_1 SELEX - 90296347 90296357 5.0E-06 ACCACCATTTT 11 Gata1_MA0035.2 JASPAR + 90296670 90296680 8.0E-06 GTAGATAAGAA 11 GATA3_GATA_full_monomeric_8_1 SELEX + 90296672 90296679 7.0E-06 AGATAAGA 8 TFAP2A_TFAP_DBD_dimeric_13_1 SELEX + 90293976 90293988 9.0E-06 AGCCCCGAGGGGA 13 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 90296489 90296504 5.0E-06 TTCCCACGATTCTTTG 16 MGA_TBX_DBD_dimeric_18_1 SELEX + 90294519 90294536 8.0E-06 AGGTGTGAAGTGGCCCCT 18 MGA_TBX_DBD_dimeric_18_1 SELEX - 90294519 90294536 4.0E-06 AGGGGCCACTTCACACCT 18 Stat3_MA0144.1 JASPAR + 90296547 90296556 6.0E-06 TGCCAGGAAG 10 FEV_MA0156.1 JASPAR - 90296523 90296530 1.0E-05 CAGGAAAT 8 Pou5f1_MA0142.1 JASPAR + 90291412 90291426 1.0E-06 CTTTGCCATGCAAAT 15 Pou5f1_MA0142.1 JASPAR - 90294547 90294561 8.0E-06 CTTTGATGTGCTGAT 15 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 90295176 90295187 8.0E-06 TGACAGCTGTGG 12 MEIS2_MEIS_DBD_dimeric_14_1 SELEX - 90295175 90295188 9.0E-06 GTGACAGCTGTGGC 14 NRF1_NRF_full_dimeric_12_1 SELEX + 90290268 90290279 1.0E-05 CACACATGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX + 90294174 90294185 0.0E+00 TGCGCATGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 90294174 90294185 0.0E+00 TGCGCATGCGCA 12 Sox2_MA0143.1 JASPAR + 90291411 90291425 5.0E-06 CCTTTGCCATGCAAA 15 NFE2L2_MA0150.1 JASPAR + 90295262 90295272 7.0E-06 ATGACGCAGCA 11 Zfx_MA0146.1 JASPAR - 90293890 90293903 7.0E-06 GCGGGCTGGGCCTG 14 V_FOXP1_01_M00987 TRANSFAC + 90297751 90297770 5.0E-06 TTATTTGTGTTGGGCCACAT 20 V_FOXP1_01_M00987 TRANSFAC + 90299074 90299093 2.0E-06 ATCTTGGTATTTTTTTGTAG 20 V_OBOX6_01_M01445 TRANSFAC + 90295924 90295938 6.0E-06 TAAAGAGGATTATGG 15 V_EVI1_05_M00082 TRANSFAC + 90296672 90296682 2.0E-06 AGATAAGAAAA 11 V_E2F4_Q6_M02090 TRANSFAC - 90294187 90294196 1.0E-05 GCGGGAGAAA 10 V_GATA2_02_M00348 TRANSFAC + 90296670 90296679 8.0E-06 GTAGATAAGA 10 V_NFY_Q6_M00185 TRANSFAC + 90291340 90291350 3.0E-06 TAGCCAATGAG 11 V_NF1A_Q6_M02103 TRANSFAC + 90295165 90295180 1.0E-06 TTGGCCTGTTGCCACA 16 V_ACAAT_B_M00309 TRANSFAC - 90296480 90296488 8.0E-06 CATTGGTGG 9 V_HMGIY_Q3_M01010 TRANSFAC + 90299077 90299091 7.0E-06 TTGGTATTTTTTTGT 15 V_BCL6_01_M01183 TRANSFAC - 90291367 90291382 6.0E-06 TTATTAGCAAGTCTTT 16 V_BCL6_01_M01183 TRANSFAC + 90299073 90299088 3.0E-06 AATCTTGGTATTTTTT 16 V_POU5F1_02_M02245 TRANSFAC + 90291412 90291426 1.0E-06 CTTTGCCATGCAAAT 15 V_POU5F1_02_M02245 TRANSFAC - 90294547 90294561 8.0E-06 CTTTGATGTGCTGAT 15 V_MAFB_03_M02879 TRANSFAC + 90296338 90296352 3.0E-06 CAATTGAAAAAAATG 15 V_OCT1_Q5_01_M00930 TRANSFAC - 90296485 90296495 7.0E-06 TTCTTTGCATT 11 V_P53_DECAMER_Q2_M00761 TRANSFAC - 90298226 90298235 1.0E-06 AGACAAGTCT 10 V_AP2_Q6_01_M00915 TRANSFAC + 90298178 90298190 4.0E-06 CAGCCCTCAGGCT 13 V_GATA_C_M00203 TRANSFAC + 90296672 90296682 1.0E-06 AGATAAGAAAA 11 V_NKX24_01_M01350 TRANSFAC - 90297738 90297753 6.0E-06 TAAACTTCTTAAACAT 16 V_AP4_Q6_02_M01860 TRANSFAC - 90295173 90295185 3.0E-06 ACAGCTGTGGCAA 13 V_TCFAP2E_04_M02926 TRANSFAC + 90296338 90296351 1.0E-06 CAATTGAAAAAAAT 14 V_TCFAP2E_04_M02926 TRANSFAC + 90296339 90296352 8.0E-06 AATTGAAAAAAATG 14 V_P53_02_M00272 TRANSFAC + 90298226 90298235 4.0E-06 AGACTTGTCT 10 V_CETS1P54_02_M00074 TRANSFAC - 90296521 90296533 4.0E-06 CTTCAGGAAATTT 13 V_ELF4_04_M02850 TRANSFAC - 90299078 90299094 4.0E-06 TCTACAAAAAAATACCA 17 V_ELF4_04_M02850 TRANSFAC - 90299080 90299096 2.0E-06 TATCTACAAAAAAATAC 17 V_TST1_01_M00133 TRANSFAC - 90291380 90291394 0.0E+00 GGGGAATTAAAGTTA 15 V_STAF_01_M00262 TRANSFAC - 90296485 90296506 2.0E-06 GGTTCCCACGATTCTTTGCATT 22 V_NKX31_02_M02782 TRANSFAC + 90295914 90295930 1.0E-06 TTCAGCCACTTAAAGAG 17 V_NKX31_02_M02782 TRANSFAC - 90297738 90297754 9.0E-06 ATAAACTTCTTAAACAT 17 V_IK1_01_M00086 TRANSFAC - 90295235 90295247 5.0E-06 CATTGGGAAAACC 13 V_EVI1_01_M00078 TRANSFAC + 90296667 90296682 8.0E-06 ATAGTAGATAAGAAAA 16 V_ELF5_01_M01197 TRANSFAC - 90296522 90296532 1.0E-05 TTCAGGAAATT 11 V_IK2_01_M00087 TRANSFAC - 90295236 90295247 1.0E-06 CATTGGGAAAAC 12 V_NFKAPPAB50_01_M00051 TRANSFAC + 90293852 90293861 4.0E-06 GGGGATCCCC 10 V_NFKAPPAB50_01_M00051 TRANSFAC - 90293852 90293861 4.0E-06 GGGGATCCCC 10 V_GRE_C_M00205 TRANSFAC + 90295197 90295212 1.0E-06 TTTACCTGATGTTCTG 16 V_GATA1_09_M02254 TRANSFAC + 90296670 90296680 8.0E-06 GTAGATAAGAA 11 V_RFX_Q6_M00975 TRANSFAC + 90295170 90295178 4.0E-06 CTGTTGCCA 9 V_HFH1_01_M00129 TRANSFAC + 90297745 90297756 9.0E-06 AGAAGTTTATTT 12 V_SP3_Q3_M00665 TRANSFAC + 90291318 90291331 7.0E-06 AGCCCTCTGCAGGG 14 V_OCT4_02_M01124 TRANSFAC + 90291413 90291427 2.0E-06 TTTGCCATGCAAATA 15 V_OCT4_02_M01124 TRANSFAC + 90295299 90295313 4.0E-06 TTCGTGATGAAAATT 15 V_OCT1_B_M00342 TRANSFAC + 90291418 90291427 3.0E-06 CATGCAAATA 10 V_NKX32_02_M01482 TRANSFAC + 90295914 90295930 8.0E-06 TTCAGCCACTTAAAGAG 17 V_NKX32_02_M01482 TRANSFAC - 90297738 90297754 9.0E-06 ATAAACTTCTTAAACAT 17 V_MYOD_Q6_02_M02100 TRANSFAC + 90295179 90295187 4.0E-06 CAGCTGTCA 9 V_ALPHACP1_01_M00687 TRANSFAC + 90291340 90291350 1.0E-06 TAGCCAATGAG 11 V_NFYC_Q5_M02107 TRANSFAC + 90291340 90291353 6.0E-06 TAGCCAATGAGCCC 14 V_POU5F1_01_M01307 TRANSFAC + 90291418 90291427 6.0E-06 CATGCAAATA 10 V_POU5F1_01_M01307 TRANSFAC + 90296485 90296494 6.0E-06 AATGCAAAGA 10 V_TAL1_01_M01591 TRANSFAC - 90296670 90296682 7.0E-06 TTTTCTTATCTAC 13 V_OSR2_04_M02889 TRANSFAC + 90291371 90291386 5.0E-06 ACTTGCTAATAACTTT 16 V_SIRT6_01_M01797 TRANSFAC + 90296672 90296679 7.0E-06 AGATAAGA 8 V_T3R_Q6_M00963 TRANSFAC - 90296554 90296562 3.0E-06 ACTGTCCTT 9 V_ZFP206_01_M01742 TRANSFAC + 90294174 90294184 0.0E+00 TGCGCATGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 90294175 90294185 0.0E+00 TGCGCATGCGC 11 V_RBPJK_01_M01112 TRANSFAC + 90296495 90296505 2.0E-06 ATCGTGGGAAC 11 V_NRF1_Q6_M00652 TRANSFAC + 90290270 90290279 9.0E-06 CACATGCGCA 10 V_NRF1_Q6_M00652 TRANSFAC - 90294174 90294183 2.0E-06 CGCATGCGCA 10 V_NRF1_Q6_M00652 TRANSFAC + 90294176 90294185 2.0E-06 CGCATGCGCA 10 V_TBX22_01_M01195 TRANSFAC + 90294519 90294537 2.0E-06 AGGTGTGAAGTGGCCCCTT 19 V_SOX2_01_M02246 TRANSFAC + 90291411 90291425 5.0E-06 CCTTTGCCATGCAAA 15 V_SRF_06_M02916 TRANSFAC - 90299077 90299093 2.0E-06 CTACAAAAAAATACCAA 17 V_HFH3_01_M00289 TRANSFAC + 90297749 90297761 8.0E-06 GTTTATTTGTGTT 13 V_PIT1_Q6_M00802 TRANSFAC - 90297733 90297750 3.0E-06 ACTTCTTAAACATTCCGT 18 V_CTF1_01_M01196 TRANSFAC - 90295165 90295178 0.0E+00 TGGCAACAGGCCAA 14 V_NFE2L2_01_M02263 TRANSFAC + 90295262 90295272 7.0E-06 ATGACGCAGCA 11 V_GATA5_03_M02756 TRANSFAC + 90296667 90296683 0.0E+00 ATAGTAGATAAGAAAAT 17 V_GATA6_04_M02757 TRANSFAC + 90296667 90296683 1.0E-06 ATAGTAGATAAGAAAAT 17 V_OBOX6_02_M03068 TRANSFAC + 90295924 90295938 6.0E-06 TAAAGAGGATTATGG 15 TLX1_NFIC_MA0119.1 JASPAR - 90295165 90295178 0.0E+00 TGGCAACAGGCCAA 14 V_FEV_01_M02269 TRANSFAC - 90296523 90296530 1.0E-05 CAGGAAAT 8 V_EVI1_03_M00080 TRANSFAC + 90296672 90296682 6.0E-06 AGATAAGAAAA 11 V_SOX9_Q4_M01284 TRANSFAC - 90298235 90298245 6.0E-06 AAACAGAGGAA 11 V_OCT4_01_M01125 TRANSFAC + 90291412 90291426 1.0E-06 CTTTGCCATGCAAAT 15 V_OCT4_01_M01125 TRANSFAC + 90299081 90299095 4.0E-06 TATTTTTTTGTAGAT 15 V_OTX3_01_M01403 TRANSFAC + 90295924 90295940 3.0E-06 TAAAGAGGATTATGGTG 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.