Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

CBWD2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55871 COBW domain containing 1 chr9 - 178575 - 184075 179075 Transcription Factor Binding Sites   Download all TFBS in the CBWD2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HOXD12_homeodomain_DBD_monomeric_9_1 SELEX - 179384 179392 6.0E-06 GTGATAAAA 9 SP8_C2H2_DBD_monomeric_12_1 SELEX - 178546 178557 5.0E-06 GACACGCCCCCC 12 SP3_C2H2_DBD_monomeric_11_1 SELEX + 179149 179159 7.0E-06 GCCACACCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 178547 178557 2.0E-06 GACACGCCCCC 11 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 179149 179159 4.0E-06 GCCACACCCCC 11 KLF14_C2H2_DBD_monomeric_14_1 SELEX - 178545 178558 1.0E-06 AGACACGCCCCCCT 14 KLF13_C2H2_full_monomeric_18_1 SELEX - 178542 178559 1.0E-06 AAGACACGCCCCCCTAAT 18 znf143_MA0088.1 JASPAR + 179364 179383 7.0E-06 CAGTTCCCACAGGGCATAGA 20 SP4_C2H2_full_monomeric_17_1 SELEX - 178544 178560 0.0E+00 TAAGACACGCCCCCCTA 17 SP1_C2H2_DBD_monomeric_11_1 SELEX + 179149 179159 8.0E-06 GCCACACCCCC 11 TFAP2A_MA0003.1 JASPAR - 179240 179248 8.0E-06 GCCCTAGGG 9 RORA_nuclearreceptor_DBD_dimeric_20_1 SELEX - 178681 178700 9.0E-06 TCGAGGTCGGGGCTGGGTCA 20 V_AP2ALPHA_01_M00469 TRANSFAC - 179240 179248 8.0E-06 GCCCTAGGG 9 V_NFKB_C_M00208 TRANSFAC - 179232 179243 7.0E-06 AGGGACTCTCCG 12 V_MYOD_Q6_M00184 TRANSFAC + 179255 179264 2.0E-06 ACCACCTGTC 10 V_HOXA3_01_M00395 TRANSFAC - 178539 178547 4.0E-06 CCTAATTGT 9 V_GATA3_05_M02859 TRANSFAC + 179375 179396 3.0E-06 GGGCATAGATTTTATCACCTTG 22 V_SP4_03_M02810 TRANSFAC - 178542 178558 7.0E-06 AGACACGCCCCCCTAAT 17 V_NFKB_Q6_M00194 TRANSFAC - 179231 179244 1.0E-05 TAGGGACTCTCCGC 14 V_ZBTB7B_03_M02826 TRANSFAC - 178540 178554 8.0E-06 ACGCCCCCCTAATTG 15 V_MYOD_01_M00001 TRANSFAC - 179254 179265 7.0E-06 AGACAGGTGGTT 12 V_ERR1_Q2_M00511 TRANSFAC - 179387 179400 6.0E-06 AAATCAAGGTGATA 14 V_CPHX_01_M01478 TRANSFAC - 179379 179392 8.0E-06 GTGATAAAATCTAT 14 V_TCF4_Q5_M00671 TRANSFAC - 178576 178583 1.0E-05 CCTTTGAA 8 V_ZIC3_04_M02837 TRANSFAC - 179152 179166 8.0E-06 CTCCCCGGGGGGTGT 15 V_ZIC3_04_M02837 TRANSFAC - 179153 179167 7.0E-06 CCTCCCCGGGGGGTG 15 V_ZIC3_04_M02837 TRANSFAC + 179154 179168 1.0E-06 ACCCCCCGGGGAGGT 15 V_ZIC1_04_M02835 TRANSFAC - 179153 179166 5.0E-06 CTCCCCGGGGGGTG 14 V_ZIC1_04_M02835 TRANSFAC + 179154 179167 6.0E-06 ACCCCCCGGGGAGG 14 V_LTF_Q6_M01692 TRANSFAC - 178676 178684 1.0E-05 GTCACTTGC 9 V_ZIC2_04_M02836 TRANSFAC - 179152 179166 9.0E-06 CTCCCCGGGGGGTGT 15 V_ZIC2_04_M02836 TRANSFAC + 179154 179168 1.0E-06 ACCCCCCGGGGAGGT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.