Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

USE1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55850 unconventional SNARE in the ER 1 homolog (S. cerevisiae) chr19 + 17321154 - 17326654 17326154 Transcription Factor Binding Sites   Download all TFBS in the USE1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFE2_bZIP_DBD_dimeric_11_1 SELEX + 17331105 17331115 6.0E-06 GGTGACTCATC 11 NFE2_bZIP_DBD_dimeric_11_1 SELEX - 17331105 17331115 7.0E-06 GATGAGTCACC 11 NKX2-8_homeodomain_full_monomeric_9_1 SELEX + 17326145 17326153 3.0E-06 CCACTTGAA 9 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 17326538 17326548 1.0E-05 GCCCCGCCCCC 11 Zfp652_C2H2_DBD_monomeric_13_1 SELEX + 17325867 17325879 2.0E-06 CCGAAGGGTTAAC 13 EBF1_EBF_full_dimeric_14_1 SELEX + 17321381 17321394 4.0E-06 TGTCCCATGGGATT 14 EBF1_EBF_full_dimeric_14_1 SELEX - 17321381 17321394 1.0E-06 AATCCCATGGGACA 14 YY1_C2H2_full_monomeric_11_1 SELEX - 17326212 17326222 1.0E-06 GCCGCCATTAT 11 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX + 17325994 17326005 1.0E-05 TCCTTTCCCACC 12 CEBPA_MA0102.2 JASPAR - 17331050 17331058 4.0E-06 TTTTGCAAT 9 Pax4_MA0068.1 JASPAR + 17331056 17331085 3.0E-06 AAAAAAAAAAAAAAAAGATTCTAAAAAGAA 30 SP1_MA0079.2 JASPAR + 17326486 17326495 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR + 17326539 17326548 7.0E-06 CCCCGCCCCC 10 SP4_C2H2_full_monomeric_17_1 SELEX + 17326497 17326513 3.0E-06 CTGGCCCCGCCTCCTTT 17 SP4_C2H2_full_monomeric_17_1 SELEX + 17326535 17326551 1.0E-05 TCGGCCCCGCCCCCCCG 17 YY2_C2H2_full_monomeric_11_1 SELEX - 17326212 17326222 7.0E-06 GCCGCCATTAT 11 SCRT1_C2H2_DBD_monomeric_15_1 SELEX - 17326448 17326462 4.0E-06 AAGCTACAGGTGGAC 15 NKX2-3_homeodomain_full_monomeric_10_1 SELEX + 17326144 17326153 9.0E-06 GCCACTTGAA 10 JDP2_bZIP_full_dimeric_9_1 SELEX - 17331106 17331114 1.0E-05 ATGAGTCAC 9 RORA_nuclearreceptor_DBD_dimeric_20_1 SELEX + 17326645 17326664 8.0E-06 TGAAGGTCCACGCGAGGTGA 20 ETV6_ETS_full_monomeric_10_1 SELEX - 17326156 17326165 9.0E-06 GGCGGAAGTG 10 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 17331053 17331065 5.0E-06 GCAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 17331055 17331067 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 17331056 17331068 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 17331057 17331069 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 17331058 17331070 6.0E-06 AAAAAAAAAAAAA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 17331059 17331071 6.0E-06 AAAAAAAAAAAAA 13 V_FOXP1_01_M00987 TRANSFAC - 17331051 17331070 5.0E-06 TTTTTTTTTTTTTTTTGCAA 20 V_FOXP1_01_M00987 TRANSFAC - 17331055 17331074 0.0E+00 ATCTTTTTTTTTTTTTTTTT 20 V_FOXP1_01_M00987 TRANSFAC - 17331063 17331082 7.0E-06 TTTTTAGAATCTTTTTTTTT 20 V_XVENT1_01_M00445 TRANSFAC + 17325933 17325945 8.0E-06 CTCCTATTTTTTT 13 V_TCF3_01_M01594 TRANSFAC - 17331061 17331073 7.0E-06 TCTTTTTTTTTTT 13 V_EVI1_05_M00082 TRANSFAC + 17326071 17326081 8.0E-06 AAACAAGATAT 11 V_BACH2_01_M00490 TRANSFAC - 17331105 17331115 4.0E-06 GATGAGTCACC 11 V_CEBP_Q3_M00770 TRANSFAC - 17331050 17331061 7.0E-06 TTTTTTTGCAAT 12 V_EVI1_04_M00081 TRANSFAC + 17331055 17331069 6.0E-06 AAAAAAAAAAAAAAA 15 V_EVI1_04_M00081 TRANSFAC + 17331056 17331070 6.0E-06 AAAAAAAAAAAAAAA 15 V_EVI1_04_M00081 TRANSFAC + 17331057 17331071 6.0E-06 AAAAAAAAAAAAAAA 15 V_EVI1_04_M00081 TRANSFAC + 17331061 17331075 5.0E-06 AAAAAAAAAAAGATT 15 V_BCL6_01_M01183 TRANSFAC - 17331055 17331070 0.0E+00 TTTTTTTTTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 17331056 17331071 0.0E+00 TTTTTTTTTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 17331057 17331072 2.0E-06 CTTTTTTTTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 17331058 17331073 9.0E-06 TCTTTTTTTTTTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 17331067 17331082 3.0E-06 TTTTTAGAATCTTTTT 16 V_BCL6_01_M01183 TRANSFAC - 17331068 17331083 9.0E-06 CTTTTTAGAATCTTTT 16 V_COE1_Q6_M01871 TRANSFAC + 17321383 17321396 1.0E-05 TCCCATGGGATTCC 14 V_SPIB_02_M02041 TRANSFAC - 17326082 17326091 1.0E-06 AGCGGAAGTA 10 V_ZFP740_04_M02938 TRANSFAC - 17326350 17326366 1.0E-06 AATCACCCCCCGGGAGT 17 V_EBOX_Q6_01_M01034 TRANSFAC + 17321364 17321373 8.0E-06 CCACATGACC 10 V_MAFB_03_M02879 TRANSFAC - 17325938 17325952 1.0E-05 CTATTTTAAAAAAAT 15 V_MAFB_03_M02879 TRANSFAC + 17331048 17331062 0.0E+00 CCATTGCAAAAAAAA 15 V_SP1_Q6_01_M00931 TRANSFAC - 17326538 17326547 4.0E-06 GGGGCGGGGC 10 V_MEF2_02_M00231 TRANSFAC + 17325936 17325957 3.0E-06 CTATTTTTTTAAAATAGAGATA 22 V_NKX25_Q6_M02108 TRANSFAC + 17326144 17326154 2.0E-06 GCCACTTGAAG 11 V_CEBP_Q2_M00190 TRANSFAC + 17331048 17331061 6.0E-06 CCATTGCAAAAAAA 14 V_SP1_03_M02281 TRANSFAC + 17326486 17326495 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC + 17326539 17326548 7.0E-06 CCCCGCCCCC 10 V_TCFAP2E_04_M02926 TRANSFAC - 17325937 17325950 4.0E-06 ATTTTAAAAAAATA 14 V_TCFAP2E_04_M02926 TRANSFAC - 17325938 17325951 7.0E-06 TATTTTAAAAAAAT 14 V_TCFAP2E_04_M02926 TRANSFAC + 17331052 17331065 1.0E-06 TGCAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 17331054 17331067 2.0E-06 CAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 17331055 17331068 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 17331056 17331069 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 17331057 17331070 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 17331058 17331071 1.0E-06 AAAAAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 17331059 17331072 4.0E-06 AAAAAAAAAAAAAG 14 V_TCFAP2E_04_M02926 TRANSFAC + 17331060 17331073 6.0E-06 AAAAAAAAAAAAGA 14 V_TCFAP2E_04_M02926 TRANSFAC + 17331074 17331087 8.0E-06 TTCTAAAAAGAAAA 14 V_MEF2A_Q6_M02024 TRANSFAC - 17325942 17325951 2.0E-06 TATTTTAAAA 10 V_PAX4_01_M00373 TRANSFAC - 17326506 17326526 8.0E-06 AGGGGTCAAGCGTAAAGGAGG 21 V_NRSE_B_M00325 TRANSFAC + 17326406 17326426 4.0E-06 AGTAGCCTCTCGGGCAGCGCC 21 V_AP1_Q6_M00174 TRANSFAC + 17331105 17331115 7.0E-06 GGTGACTCATC 11 V_SPIC_01_M02042 TRANSFAC - 17326082 17326091 1.0E-06 AGCGGAAGTA 10 V_ELF4_04_M02850 TRANSFAC - 17325934 17325950 8.0E-06 ATTTTAAAAAAATAGGA 17 V_ELF4_04_M02850 TRANSFAC + 17331050 17331066 1.0E-06 ATTGCAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 17331051 17331067 0.0E+00 TTGCAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 17331052 17331068 4.0E-06 TGCAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 17331053 17331069 1.0E-06 GCAAAAAAAAAAAAAAA 17 V_ELF4_04_M02850 TRANSFAC + 17331055 17331071 6.0E-06 AAAAAAAAAAAAAAAAA 17 V_BACH1_01_M00495 TRANSFAC - 17331103 17331117 8.0E-06 TTGATGAGTCACCAC 15 V_ZNF219_01_M01122 TRANSFAC + 17326542 17326553 8.0E-06 CGCCCCCCCGAC 12 V_GC_01_M00255 TRANSFAC - 17326536 17326549 5.0E-06 GGGGGGCGGGGCCG 14 V_ZFP105_03_M02827 TRANSFAC + 17331052 17331066 0.0E+00 TGCAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 17331053 17331067 8.0E-06 GCAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 17331054 17331068 1.0E-06 CAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 17331055 17331069 0.0E+00 AAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 17331056 17331070 0.0E+00 AAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 17331057 17331071 0.0E+00 AAAAAAAAAAAAAAA 15 V_ZFP105_03_M02827 TRANSFAC + 17331058 17331072 0.0E+00 AAAAAAAAAAAAAAG 15 V_ZFP105_03_M02827 TRANSFAC + 17331059 17331073 1.0E-06 AAAAAAAAAAAAAGA 15 V_ZFP105_03_M02827 TRANSFAC + 17331060 17331074 0.0E+00 AAAAAAAAAAAAGAT 15 V_ERF_01_M01984 TRANSFAC - 17326082 17326091 5.0E-06 AGCGGAAGTA 10 V_KROX_Q6_M00982 TRANSFAC + 17326462 17326475 2.0E-06 TCCGCCCCCGTCCC 14 V_ZBP89_Q4_M01816 TRANSFAC + 17326487 17326496 4.0E-06 CCCTCCCCCA 10 V_RSRFC4_Q2_M00407 TRANSFAC + 17331073 17331089 6.0E-06 ATTCTAAAAAGAAAAAG 17 V_SP1_Q6_M00196 TRANSFAC - 17326499 17326511 5.0E-06 AGGAGGCGGGGCC 13 V_SP1_Q6_M00196 TRANSFAC - 17326537 17326549 0.0E+00 GGGGGGCGGGGCC 13 V_MAZ_Q6_01_M02023 TRANSFAC - 17326482 17326495 5.0E-06 GGGGGAGGGGCGGA 14 V_SOX_Q6_M01014 TRANSFAC - 17326091 17326103 1.0E-06 ATCTTTGTTTGGA 13 V_NKX22_02_M01372 TRANSFAC + 17326141 17326157 6.0E-06 AAGGCCACTTGAAGGCA 17 V_MEF2_03_M00232 TRANSFAC + 17325936 17325957 2.0E-06 CTATTTTTTTAAAATAGAGATA 22 V_JUNDM2_04_M02876 TRANSFAC + 17331102 17331117 1.0E-06 GGTGGTGACTCATCAA 16 V_JUNDM2_04_M02876 TRANSFAC - 17331103 17331118 0.0E+00 TTTGATGAGTCACCAC 16 V_MEF2_04_M00233 TRANSFAC + 17331069 17331090 2.0E-06 AAAGATTCTAAAAAGAAAAAGT 22 V_KLF7_03_M02773 TRANSFAC + 17326518 17326533 2.0E-06 TTGACCCCTCCCATTT 16 V_AP1_01_M00517 TRANSFAC - 17331104 17331116 9.0E-06 TGATGAGTCACCA 13 V_TBP_06_M02814 TRANSFAC - 17325937 17325952 1.0E-06 CTATTTTAAAAAAATA 16 V_ELK1_01_M00007 TRANSFAC - 17326153 17326168 8.0E-06 GAGGGCGGAAGTGCCT 16 V_CETS1P54_03_M01078 TRANSFAC - 17326079 17326094 4.0E-06 TGGAGCGGAAGTAATA 16 V_ZFP691_04_M02937 TRANSFAC + 17331103 17331119 9.0E-06 GTGGTGACTCATCAAAC 17 V_SP4_Q5_M01273 TRANSFAC + 17326485 17326495 5.0E-06 GCCCCTCCCCC 11 V_SP4_Q5_M01273 TRANSFAC + 17326538 17326548 1.0E-06 GCCCCGCCCCC 11 V_MTF1_06_M02882 TRANSFAC - 17325937 17325950 5.0E-06 ATTTTAAAAAAATA 14 V_MTF1_06_M02882 TRANSFAC - 17325939 17325952 9.0E-06 CTATTTTAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 17331054 17331067 8.0E-06 CAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 17331055 17331068 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 17331056 17331069 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 17331057 17331070 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 17331058 17331071 1.0E-06 AAAAAAAAAAAAAA 14 V_MTF1_06_M02882 TRANSFAC + 17331059 17331072 1.0E-06 AAAAAAAAAAAAAG 14 V_MTF1_06_M02882 TRANSFAC + 17331060 17331073 3.0E-06 AAAAAAAAAAAAGA 14 V_GABPBETA_Q3_M01876 TRANSFAC - 17326081 17326091 4.0E-06 AGCGGAAGTAA 11 V_FAC1_01_M00456 TRANSFAC + 17331055 17331068 3.0E-06 AAAAAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC + 17331056 17331069 3.0E-06 AAAAAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC + 17331057 17331070 3.0E-06 AAAAAAAAAAAAAA 14 V_FAC1_01_M00456 TRANSFAC + 17331058 17331071 3.0E-06 AAAAAAAAAAAAAA 14 V_CEBPA_01_M00116 TRANSFAC + 17331048 17331061 2.0E-06 CCATTGCAAAAAAA 14 V_ESRRA_04_M02852 TRANSFAC - 17326514 17326530 2.0E-06 TGGGAGGGGTCAAGCGT 17 V_TCF7_04_M02921 TRANSFAC - 17325938 17325952 6.0E-06 CTATTTTAAAAAAAT 15 V_NRF2_Q4_M00821 TRANSFAC - 17331105 17331117 7.0E-06 TTGATGAGTCACC 13 V_ASCL2_04_M02841 TRANSFAC + 17326518 17326533 8.0E-06 TTGACCCCTCCCATTT 16 V_PLZF_02_M01075 TRANSFAC + 17325933 17325961 4.0E-06 CTCCTATTTTTTTAAAATAGAGATAGAGT 29 V_ZFP281_01_M01597 TRANSFAC - 17326486 17326496 1.0E-06 TGGGGGAGGGG 11 V_SRF_06_M02916 TRANSFAC - 17325933 17325949 7.0E-06 TTTTAAAAAAATAGGAG 17 V_SRF_06_M02916 TRANSFAC - 17325934 17325950 3.0E-06 ATTTTAAAAAAATAGGA 17 V_SRF_06_M02916 TRANSFAC + 17331049 17331065 9.0E-06 CATTGCAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 17331050 17331066 1.0E-06 ATTGCAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 17331051 17331067 0.0E+00 TTGCAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 17331052 17331068 2.0E-06 TGCAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 17331053 17331069 0.0E+00 GCAAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 17331054 17331070 0.0E+00 CAAAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 17331055 17331071 0.0E+00 AAAAAAAAAAAAAAAAA 17 V_SRF_06_M02916 TRANSFAC + 17331056 17331072 1.0E-06 AAAAAAAAAAAAAAAAG 17 V_SRF_06_M02916 TRANSFAC + 17331057 17331073 0.0E+00 AAAAAAAAAAAAAAAGA 17 V_SRF_06_M02916 TRANSFAC + 17331058 17331074 0.0E+00 AAAAAAAAAAAAAAGAT 17 V_SRF_06_M02916 TRANSFAC + 17331059 17331075 0.0E+00 AAAAAAAAAAAAAGATT 17 V_SRF_06_M02916 TRANSFAC + 17331060 17331076 8.0E-06 AAAAAAAAAAAAGATTC 17 V_SRF_06_M02916 TRANSFAC + 17331076 17331092 2.0E-06 CTAAAAAGAAAAAGTCA 17 V_NFE2_01_M00037 TRANSFAC - 17331106 17331116 4.0E-06 TGATGAGTCAC 11 V_SP1_Q2_01_M00933 TRANSFAC + 17326539 17326548 4.0E-06 CCCCGCCCCC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC - 17326485 17326498 1.0E-06 AGTGGGGGAGGGGC 14 V_SP1_Q4_01_M00932 TRANSFAC - 17326537 17326549 1.0E-06 GGGGGGCGGGGCC 13 V_TCF3_05_M02920 TRANSFAC + 17331050 17331064 3.0E-06 ATTGCAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC + 17331051 17331065 1.0E-06 TTGCAAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC + 17331052 17331066 4.0E-06 TGCAAAAAAAAAAAA 15 V_SPI1_02_M02043 TRANSFAC - 17326082 17326091 3.0E-06 AGCGGAAGTA 10 V_CEBPA_Q6_M01866 TRANSFAC - 17331049 17331061 6.0E-06 TTTTTTTGCAATG 13 V_NANOG_02_M01247 TRANSFAC + 17331050 17331069 3.0E-06 ATTGCAAAAAAAAAAAAAAA 20 V_NANOG_02_M01247 TRANSFAC + 17331051 17331070 8.0E-06 TTGCAAAAAAAAAAAAAAAA 20 V_NANOG_02_M01247 TRANSFAC + 17331055 17331074 5.0E-06 AAAAAAAAAAAAAAAAAGAT 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.