Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PARVA Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55742 parvin, alpha chr11 + 12394025 - 12399525 12399025 Transcription Factor Binding Sites   Download all TFBS in the PARVA promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HOXD12_homeodomain_DBD_monomeric_9_1 SELEX + 12397809 12397817 9.0E-06 TTAATAAAA 9 MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 12397515 12397532 1.0E-06 GTAATCAAAACACACTTA 18 HES5_bHLH_DBD_dimeric_12_1 SELEX + 12398292 12398303 8.0E-06 TAACACGTGCCT 12 BARX1_homeodomain_DBD_dimeric_17_1 SELEX + 12397516 12397532 7.0E-06 TAATCAAAACACACTTA 17 ZNF713_C2H2_full_monomeric_17_1 SELEX + 12399312 12399328 1.0E-05 AGGAAGAAAGCCAAGGA 17 Zfp652_C2H2_DBD_monomeric_13_1 SELEX + 12397801 12397813 5.0E-06 TGGATGGGTTAAT 13 En1_MA0027.1 JASPAR - 12398049 12398059 5.0E-06 AAGTTGTGCTC 11 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX - 12397611 12397619 8.0E-06 AAAAGTCAT 9 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX - 12403423 12403431 8.0E-06 AAAAGTCAT 9 FOXL1_forkhead_full_dimeric_13_1 SELEX - 12399925 12399937 8.0E-06 ATTCAACAAACAC 13 ZNF435_C2H2_full_dimeric_18_1 SELEX - 12399892 12399909 8.0E-06 TCCATTAACAGAGCCCTT 18 MAX_bHLH_DBD_dimeric_10_1 SELEX + 12398293 12398302 1.0E-05 AACACGTGCC 10 EWSR1-FLI1_MA0149.1 JASPAR + 12399019 12399036 6.0E-06 GGGAGGGAGCGAGGGAGG 18 EWSR1-FLI1_MA0149.1 JASPAR + 12399032 12399049 6.0E-06 GGAGGGAGCGAGGGAAGG 18 Creb5_bZIP_DBD_dimeric_12_1 SELEX - 12397509 12397520 9.0E-06 GATTACATCATT 12 E2F7_E2F_DBD_dimeric_14_1 SELEX - 12398412 12398425 9.0E-06 ACTTCCCGCAAAAT 14 POU4F3_POU_DBD_monomeric_16_1 SELEX + 12397499 12397514 7.0E-06 AAAAATGATTAATGAT 16 POU4F3_POU_DBD_monomeric_16_1 SELEX - 12397503 12397518 7.0E-06 TTACATCATTAATCAT 16 CUX1_CUT_DBD_dimeric_18_1 SELEX + 12397506 12397523 2.0E-06 ATTAATGATGTAATCAAA 18 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX + 12397808 12397817 8.0E-06 GTTAATAAAA 10 POU6F2_POU_DBD_dimeric_16_1 SELEX + 12397507 12397522 3.0E-06 TTAATGATGTAATCAA 16 POU6F2_POU_DBD_dimeric_16_1 SELEX - 12397507 12397522 1.0E-06 TTGATTACATCATTAA 16 BHLHE23_bHLH_DBD_dimeric_10_1 SELEX - 12402647 12402656 7.0E-06 ACCATATGCC 10 E2F8_E2F_DBD_dimeric_12_1 SELEX - 12398413 12398424 3.0E-06 CTTCCCGCAAAA 12 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 12397515 12397528 2.0E-06 GTAATCAAAACACA 14 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 12399980 12399993 3.0E-06 ATACACAATAAACT 14 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 12398303 12398317 5.0E-06 TGGAAATGATTAAAA 15 MNT_bHLH_DBD_dimeric_10_1 SELEX + 12398293 12398302 4.0E-06 AACACGTGCC 10 ATF4_bZIP_DBD_dimeric_13_1 SELEX + 12397508 12397520 3.0E-06 TAATGATGTAATC 13 Atf4_bZIP_DBD_dimeric_14_1 SELEX + 12397507 12397520 4.0E-06 TTAATGATGTAATC 14 Lhx3_MA0135.1 JASPAR - 12397501 12397513 4.0E-06 TCATTAATCATTT 13 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 12399926 12399936 9.0E-06 TTCAACAAACA 11 Mycn_MA0104.2 JASPAR + 12397933 12397942 3.0E-06 ACCACGTGGC 10 Mycn_MA0104.2 JASPAR + 12397994 12398003 9.0E-06 TGCACGTGGC 10 NFIL3_bZIP_DBD_dimeric_12_1 SELEX - 12397509 12397520 7.0E-06 GATTACATCATT 12 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 12397515 12397532 2.0E-06 GTAATCAAAACACACTTA 18 HNF1B_homeodomain_full_dimeric_13_1 SELEX - 12398304 12398316 7.0E-06 GGAAATGATTAAA 13 EN1_homeodomain_full_dimeric_14_1 SELEX - 12397508 12397521 1.0E-06 TGATTACATCATTA 14 ELK1_MA0028.1 JASPAR - 12398870 12398879 5.0E-06 GAGCCGGAAA 10 DUXA_homeodomain_DBD_dimeric_13_1 SELEX + 12397510 12397522 1.0E-06 ATGATGTAATCAA 13 Myf_MA0055.1 JASPAR - 12402630 12402641 2.0E-06 AAGCAGCTGGAG 12 Rhox11_homeodomain_DBD_monomeric_9_1 SELEX + 12397621 12397629 2.0E-06 TGCTGTTAA 9 HLF_MA0043.1 JASPAR - 12397509 12397520 6.0E-06 GATTACATCATT 12 NEUROG2_bHLH_full_dimeric_10_1 SELEX - 12402647 12402656 1.0E-05 ACCATATGCC 10 Mafb_bZIP_DBD_dimeric_18_1 SELEX + 12397506 12397523 7.0E-06 ATTAATGATGTAATCAAA 18 ETV6_ETS_full_dimeric_15_1 SELEX - 12399085 12399099 4.0E-06 ACGGAAGCGGAATTA 15 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 12398303 12398317 8.0E-06 TGGAAATGATTAAAA 15 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 12397515 12397532 2.0E-06 GTAATCAAAACACACTTA 18 OLIG2_bHLH_full_dimeric_10_1 SELEX - 12402647 12402656 9.0E-06 ACCATATGCC 10 OLIG3_bHLH_DBD_dimeric_10_1 SELEX - 12402647 12402656 8.0E-06 ACCATATGCC 10 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 12397515 12397528 7.0E-06 GTAATCAAAACACA 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 12399980 12399993 6.0E-06 ATACACAATAAACT 14 V_MEIS1BHOXA9_02_M00421 TRANSFAC - 12403410 12403423 6.0E-06 TGACATTATAAGAA 14 V_AP2ALPHA_Q6_M01857 TRANSFAC - 12399632 12399642 3.0E-06 CGCCTCCGGCC 11 V_STAT5A_Q6_M01890 TRANSFAC + 12403406 12403418 7.0E-06 ACTTTTCTTATAA 13 V_TST1_02_M01316 TRANSFAC + 12397501 12397517 8.0E-06 AAATGATTAATGATGTA 17 V_GEN_INI_B_M00315 TRANSFAC + 12394027 12394034 1.0E-05 CCTCATTT 8 V_SOX40_04_M02908 TRANSFAC - 12403408 12403423 6.0E-06 TGACATTATAAGAAAA 16 V_MAX_Q6_M01830 TRANSFAC - 12397995 12398006 3.0E-06 CTAGCCACGTGC 12 V_FOXA2_04_M02749 TRANSFAC - 12397777 12397793 8.0E-06 TTAAACTAAATAAAGTG 17 V_RHOX11_01_M01347 TRANSFAC + 12397617 12397633 3.0E-06 TTTCTGCTGTTAAGTAA 17 V_NF1_Q6_01_M00806 TRANSFAC - 12397535 12397551 5.0E-06 ATGGTGAGAAGCCAAAA 17 V_SIX6_02_M01398 TRANSFAC - 12397481 12397497 9.0E-06 TTCAGGATATCAGATAT 17 V_HP1SITEFACTOR_Q6_M00725 TRANSFAC - 12398302 12398313 6.0E-06 AATGATTAAAAG 12 V_MMEF2_Q6_M00405 TRANSFAC - 12398391 12398406 6.0E-06 CTGCCTAAATAAAAGC 16 V_GABP_B_M00341 TRANSFAC + 12397859 12397870 3.0E-06 GCAGGAAGTGCA 12 V_HNF4_Q6_M00967 TRANSFAC + 12397893 12397901 7.0E-06 AAGGTCCAA 9 V_POU1F1_Q6_M00744 TRANSFAC - 12398303 12398312 8.0E-06 ATGATTAAAA 10 V_ARNT_01_M00236 TRANSFAC - 12397930 12397945 9.0E-06 GAAGCCACGTGGTCTG 16 V_ARNT_01_M00236 TRANSFAC + 12398290 12398305 7.0E-06 AATAACACGTGCCTTT 16 V_EAR2_Q2_M01728 TRANSFAC - 12398999 12399012 1.0E-05 CGCCCTCTGCCCTG 14 V_JUNDM2_03_M02772 TRANSFAC - 12397507 12397522 8.0E-06 TTGATTACATCATTAA 16 V_AREB6_04_M00415 TRANSFAC - 12398004 12398012 8.0E-06 CTGTTTCTA 9 V_NKX24_01_M01350 TRANSFAC + 12397522 12397537 9.0E-06 AAACACACTTATATTT 16 V_HTF_01_M00538 TRANSFAC - 12397408 12397431 6.0E-06 ATTAAGAGACACGTAGCTCAATAG 24 V_CMYC_02_M01154 TRANSFAC + 12397932 12397943 1.0E-06 GACCACGTGGCT 12 V_CMYC_02_M01154 TRANSFAC - 12397932 12397943 7.0E-06 AGCCACGTGGTC 12 V_LDSPOLYA_B_M00317 TRANSFAC - 12397517 12397532 1.0E-06 TAAGTGTGTTTTGATT 16 V_CDP_04_M01344 TRANSFAC - 12398032 12398046 3.0E-06 GACTGATGATCATTC 15 V_RHOX11_02_M01384 TRANSFAC + 12397617 12397633 5.0E-06 TTTCTGCTGTTAAGTAA 17 V_WT1_Q6_01_M02036 TRANSFAC + 12399597 12399606 4.0E-06 CGCCCCCGCC 10 V_ETS_Q4_M00771 TRANSFAC - 12397860 12397871 7.0E-06 TTGCACTTCCTG 12 V_LHX61_01_M01314 TRANSFAC - 12397499 12397515 7.0E-06 CATCATTAATCATTTTT 17 V_TAL1_Q6_M00993 TRANSFAC + 12402631 12402640 3.0E-06 TCCAGCTGCT 10 V_COMP1_01_M00057 TRANSFAC + 12403600 12403623 3.0E-06 GGAGATGATTAGCGTCACAAGGTG 24 V_SOX7_03_M02807 TRANSFAC - 12397556 12397577 5.0E-06 CCTCCTAGACAATAAATCTTAA 22 V_SOX7_03_M02807 TRANSFAC + 12399976 12399997 9.0E-06 TGTAATACACAATAAACTCCCA 22 V_GEN_INI3_B_M00314 TRANSFAC + 12394027 12394034 1.0E-05 CCTCATTT 8 V_MYF_01_M01302 TRANSFAC - 12402630 12402641 2.0E-06 AAGCAGCTGGAG 12 V_MYCMAX_01_M00118 TRANSFAC + 12397931 12397944 1.0E-06 AGACCACGTGGCTT 14 V_MYCMAX_01_M00118 TRANSFAC - 12397931 12397944 1.0E-06 AAGCCACGTGGTCT 14 V_FOXO1_02_M00474 TRANSFAC - 12397512 12397525 2.0E-06 GTTTTGATTACATC 14 V_HNF3G_Q4_M02015 TRANSFAC + 12399926 12399933 7.0E-06 TGTTTGTT 8 V_E4BP4_01_M00045 TRANSFAC + 12397509 12397520 9.0E-06 AATGATGTAATC 12 V_CMYC_01_M01145 TRANSFAC - 12397932 12397943 3.0E-06 AGCCACGTGGTC 12 V_NKX26_01_M01322 TRANSFAC + 12397522 12397537 7.0E-06 AAACACACTTATATTT 16 V_CEBPD_Q6_M00621 TRANSFAC - 12397509 12397520 9.0E-06 GATTACATCATT 12 V_ARID3A_02_M02839 TRANSFAC - 12397481 12397495 3.0E-06 CAGGATATCAGATAT 15 MYC_MAX_MA0059.1 JASPAR + 12397932 12397942 4.0E-06 GACCACGTGGC 11 MYC_MAX_MA0059.1 JASPAR - 12397933 12397943 5.0E-06 AGCCACGTGGT 11 V_CDX2_01_M01449 TRANSFAC - 12397558 12397573 5.0E-06 CTAGACAATAAATCTT 16 V_ZF5_B_M00333 TRANSFAC + 12399459 12399471 6.0E-06 CGTGCGCGCGCTT 13 V_LEF1_03_M02878 TRANSFAC - 12397500 12397515 7.0E-06 CATCATTAATCATTTT 16 V_USF_02_M00122 TRANSFAC + 12398291 12398304 8.0E-06 ATAACACGTGCCTT 14 V_USF_02_M00122 TRANSFAC - 12398291 12398304 8.0E-06 AAGGCACGTGTTAT 14 V_SFPI1_04_M02896 TRANSFAC + 12397786 12397799 1.0E-05 TAGTTTAAGGAACT 14 V_CUX1_04_M02959 TRANSFAC - 12398032 12398046 3.0E-06 GACTGATGATCATTC 15 V_PBX1_01_M00096 TRANSFAC - 12397503 12397511 1.0E-05 ATTAATCAT 9 V_IRF3_06_M02871 TRANSFAC - 12397960 12397973 2.0E-06 AAAGAATGGAGCAA 14 V_HBP1_03_M02762 TRANSFAC + 12399929 12399944 0.0E+00 TTGTTGAATGAATGAG 16 V_PIT1_01_M01465 TRANSFAC + 12397501 12397517 9.0E-06 AAATGATTAATGATGTA 17 V_USF_01_M00121 TRANSFAC + 12397931 12397944 3.0E-06 AGACCACGTGGCTT 14 V_USF_01_M00121 TRANSFAC - 12397931 12397944 3.0E-06 AAGCCACGTGGTCT 14 V_SOX12_04_M02900 TRANSFAC - 12398483 12398498 5.0E-06 GCTTATACAAAGGAAG 16 V_MEF2_04_M00233 TRANSFAC - 12397780 12397801 6.0E-06 ACAGTTCCTTAAACTAAATAAA 22 V_MUSCLE_INI_B_M00321 TRANSFAC + 12402614 12402634 6.0E-06 GCCAGCCACCACCCAGCTCCA 21 V_ZIC3_05_M02941 TRANSFAC - 12400037 12400051 5.0E-06 GTTCACAGCAGGCCC 15 V_PAX8_01_M00717 TRANSFAC + 12399927 12399941 1.0E-05 GTTTGTTGAATGAAT 15 V_NKX3A_01_M00451 TRANSFAC - 12397524 12397535 9.0E-06 ATATAAGTGTGT 12 V_STAT4_Q5_M02117 TRANSFAC - 12403409 12403418 0.0E+00 TTATAAGAAA 10 V_MYCN_01_M02259 TRANSFAC + 12397933 12397942 3.0E-06 ACCACGTGGC 10 V_MYCN_01_M02259 TRANSFAC + 12397994 12398003 9.0E-06 TGCACGTGGC 10 V_POU6F1_01_M00465 TRANSFAC - 12398408 12398418 1.0E-06 GCAAAATTTAT 11 V_HIC1_02_M01072 TRANSFAC + 12399424 12399438 1.0E-06 CGCGGGTGCCCGGCG 15 V_BLIMP1_Q6_M01066 TRANSFAC + 12399042 12399057 3.0E-06 AGGGAAGGGAAAGGCG 16 V_ELK1_01_M00007 TRANSFAC + 12397856 12397871 6.0E-06 CTGGCAGGAAGTGCAA 16 V_GATA4_Q3_M00632 TRANSFAC - 12397475 12397486 7.0E-06 AGATATAGGACA 12 V_VBP_01_M00228 TRANSFAC - 12397510 12397519 4.0E-06 ATTACATCAT 10 V_LRH1_Q5_M01142 TRANSFAC - 12397889 12397900 1.0E-05 TGGACCTTGAAT 12 V_FXR_IR1_Q6_M00767 TRANSFAC + 12402698 12402710 8.0E-06 AAATGACTGTCCT 13 V_MINI19_B_M00323 TRANSFAC + 12402614 12402634 4.0E-06 GCCAGCCACCACCCAGCTCCA 21 V_FAC1_01_M00456 TRANSFAC + 12397517 12397530 4.0E-06 AATCAAAACACACT 14 V_MAX_01_M00119 TRANSFAC + 12397931 12397944 1.0E-06 AGACCACGTGGCTT 14 V_MAX_01_M00119 TRANSFAC - 12397931 12397944 1.0E-06 AAGCCACGTGGTCT 14 V_MAX_01_M00119 TRANSFAC + 12398291 12398304 5.0E-06 ATAACACGTGCCTT 14 V_MAX_01_M00119 TRANSFAC - 12398291 12398304 5.0E-06 AAGGCACGTGTTAT 14 V_T3R_Q6_M00963 TRANSFAC + 12402703 12402711 3.0E-06 ACTGTCCTT 9 V_CPHX_01_M01478 TRANSFAC - 12397509 12397522 2.0E-06 TTGATTACATCATT 14 V_CPHX_01_M01478 TRANSFAC + 12397510 12397523 0.0E+00 ATGATGTAATCAAA 14 V_GEN_INI2_B_M00313 TRANSFAC + 12394027 12394034 1.0E-05 CCTCATTT 8 V_PXR_Q2_M00964 TRANSFAC + 12397805 12397816 0.0E+00 TGGGTTAATAAA 12 V_NKX61_02_M01469 TRANSFAC + 12397502 12397517 3.0E-06 AATGATTAATGATGTA 16 V_RHOX11_05_M03099 TRANSFAC + 12397617 12397633 5.0E-06 TTTCTGCTGTTAAGTAA 17 V_FOX_Q2_M00809 TRANSFAC + 12399923 12399935 9.0E-06 GAGTGTTTGTTGA 13 V_BBX_03_M02739 TRANSFAC - 12399929 12399943 5.0E-06 TCATTCATTCAACAA 15 V_SOX8_03_M02808 TRANSFAC + 12397559 12397575 9.0E-06 AGATTTATTGTCTAGGA 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 12399019 12399036 6.0E-06 GGGAGGGAGCGAGGGAGG 18 V_EWSR1FLI1_01_M02252 TRANSFAC + 12399032 12399049 6.0E-06 GGAGGGAGCGAGGGAAGG 18 V_FOXJ2_01_M00422 TRANSFAC - 12399921 12399938 2.0E-06 CATTCAACAAACACTCGA 18 V_SIX6_01_M01345 TRANSFAC - 12397481 12397497 7.0E-06 TTCAGGATATCAGATAT 17 V_HOXD8_01_M01432 TRANSFAC + 12397500 12397516 6.0E-06 AAAATGATTAATGATGT 17 V_HOXD8_01_M01432 TRANSFAC - 12397501 12397517 7.0E-06 TACATCATTAATCATTT 17 V_HLF_01_M00260 TRANSFAC - 12397510 12397519 6.0E-06 ATTACATCAT 10 V_MYCMAX_03_M00615 TRANSFAC + 12398288 12398307 3.0E-06 TCAATAACACGTGCCTTTTA 20 V_MYCMAX_03_M00615 TRANSFAC - 12398288 12398307 3.0E-06 TAAAAGGCACGTGTTATTGA 20 V_CEBP_Q2_01_M00912 TRANSFAC - 12397508 12397519 8.0E-06 ATTACATCATTA 12 V_BRN3C_01_M01408 TRANSFAC - 12397500 12397515 1.0E-05 CATCATTAATCATTTT 16 V_BRN3C_01_M01408 TRANSFAC + 12397502 12397517 2.0E-06 AATGATTAATGATGTA 16 V_HOXA10_01_M01464 TRANSFAC - 12397557 12397572 2.0E-06 TAGACAATAAATCTTA 16 V_SP1_Q4_01_M00932 TRANSFAC - 12399700 12399712 8.0E-06 AGAGGGCGGGGCA 13 V_TAACC_B_M00331 TRANSFAC - 12397968 12397990 1.0E-05 TGAGGAGTAGGGAAACCAAAGAA 23 V_SOX5_04_M02910 TRANSFAC - 12397504 12397518 9.0E-06 TTACATCATTAATCA 15 V_RHOX11_06_M03100 TRANSFAC + 12397617 12397633 3.0E-06 TTTCTGCTGTTAAGTAA 17 V_SOX9_Q4_M01284 TRANSFAC - 12398484 12398494 1.0E-06 ATACAAAGGAA 11 V_PAX2_02_M00486 TRANSFAC + 12399986 12399994 2.0E-06 AATAAACTC 9 V_HOXC9_01_M01416 TRANSFAC - 12397503 12397518 9.0E-06 TTACATCATTAATCAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.