Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RABL6 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55684 RAB, member RAS oncogene family-like 6 chr9 + 139697373 - 139702873 139702373 Transcription Factor Binding Sites   Download all TFBS in the RABL6 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXO4_forkhead_DBD_dimeric_14_1 SELEX - 139702176 139702189 9.0E-06 GGAAAAATGTTTAT 14 Pax5_MA0014.1 JASPAR + 139703037 139703056 6.0E-06 TGTGCAGTGGAGCGGGTCGG 20 FOXF2_MA0030.1 JASPAR + 139702171 139702184 9.0E-06 CACAAATAAACATT 14 TEF_bZIP_DBD_dimeric_12_1 SELEX + 139703094 139703105 3.0E-06 GATTACATAATG 12 TEF_bZIP_DBD_dimeric_12_1 SELEX - 139703094 139703105 4.0E-06 CATTATGTAATC 12 FOXL1_forkhead_full_dimeric_13_1 SELEX + 139702171 139702183 7.0E-06 CACAAATAAACAT 13 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX - 139701834 139701845 8.0E-06 GCCTTTCCCGCA 12 HINFP1_C2H2_full_dimeric_20_1 SELEX + 139702199 139702218 1.0E-06 GCGGACGCTGGGGCGACCGG 20 HINFP1_C2H2_full_dimeric_20_1 SELEX - 139702199 139702218 1.0E-06 CCGGTCGCCCCAGCGTCCGC 20 HLF_bZIP_full_dimeric_12_1 SELEX + 139703094 139703105 5.0E-06 GATTACATAATG 12 HLF_bZIP_full_dimeric_12_1 SELEX - 139703094 139703105 2.0E-06 CATTATGTAATC 12 HINFP1_C2H2_full_monomeric_12_1 SELEX - 139702197 139702208 3.0E-06 CAGCGTCCGCAG 12 DBP_bZIP_full_dimeric_12_1 SELEX + 139703094 139703105 2.0E-06 GATTACATAATG 12 DBP_bZIP_full_dimeric_12_1 SELEX - 139703094 139703105 4.0E-06 CATTATGTAATC 12 PAX2_PAX_DBD_monomeric_18_1 SELEX - 139703038 139703055 7.0E-06 CGACCCGCTCCACTGCAC 18 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 139702175 139702188 3.0E-06 AATAAACATTTTTC 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 139702175 139702188 1.0E-06 GAAAAATGTTTATT 14 SPIB_ETS_DBD_monomeric_14_1 SELEX + 139702128 139702141 0.0E+00 AAAAAGAAGAAGTA 14 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 139703446 139703461 4.0E-06 TAAATTGTGTAAATTG 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 139703446 139703461 5.0E-06 TAAATTGTGTAAATTG 16 POU3F3_POU_DBD_monomeric_13_1 SELEX - 139702174 139702186 1.0E-05 AAAATGTTTATTT 13 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 139702175 139702188 1.0E-06 GAAAAATGTTTATT 14 Foxq1_MA0040.1 JASPAR - 139702175 139702185 1.0E-06 AAATGTTTATT 11 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 139702172 139702182 1.0E-06 ACAAATAAACA 11 E2F8_E2F_DBD_dimeric_12_1 SELEX - 139701831 139701842 3.0E-06 TTTCCCGCAGAA 12 FOXI1_MA0042.1 JASPAR - 139702174 139702185 2.0E-06 AAATGTTTATTT 12 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 139702175 139702188 8.0E-06 GAAAAATGTTTATT 14 YY2_C2H2_full_monomeric_11_1 SELEX - 139702399 139702409 4.0E-06 GCCGCCATCTT 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 139702172 139702182 1.0E-06 ACAAATAAACA 11 NFIL3_bZIP_DBD_dimeric_12_1 SELEX + 139703094 139703105 1.0E-06 GATTACATAATG 12 Foxd3_MA0041.1 JASPAR - 139702174 139702185 0.0E+00 AAATGTTTATTT 12 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX - 139703522 139703530 9.0E-06 CACATAAAA 9 HLF_MA0043.1 JASPAR + 139703094 139703105 2.0E-06 GATTACATAATG 12 FOXO3_forkhead_full_dimeric_14_1 SELEX + 139702176 139702189 8.0E-06 ATAAACATTTTTCC 14 FOXO3_forkhead_full_dimeric_14_1 SELEX - 139702176 139702189 3.0E-06 GGAAAAATGTTTAT 14 SPI1_ETS_full_monomeric_14_1 SELEX + 139702128 139702141 0.0E+00 AAAAAGAAGAAGTA 14 NRF1_NRF_full_dimeric_12_1 SELEX + 139702309 139702320 1.0E-06 TGCGCATGCGCC 12 NRF1_NRF_full_dimeric_12_1 SELEX - 139702309 139702320 6.0E-06 GGCGCATGCGCA 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 139702170 139702182 1.0E-06 ACACAAATAAACA 13 FOXO6_forkhead_DBD_dimeric_14_1 SELEX - 139702176 139702189 4.0E-06 GGAAAAATGTTTAT 14 Zfx_MA0146.1 JASPAR - 139701802 139701815 7.0E-06 CCGGCCCAGGCCTT 14 FOXO1_forkhead_DBD_dimeric_14_1 SELEX + 139702176 139702189 2.0E-06 ATAAACATTTTTCC 14 V_XFD1_01_M00267 TRANSFAC + 139702173 139702186 1.0E-06 CAAATAAACATTTT 14 V_MAFK_03_M02776 TRANSFAC - 139702174 139702188 6.0E-06 GAAAAATGTTTATTT 15 V_YY1_02_M00069 TRANSFAC - 139702392 139702411 3.0E-06 GCGCCGCCATCTTGGCGCCG 20 V_ZFX_01_M01593 TRANSFAC + 139702434 139702449 7.0E-06 CCGGAGGCCGCGGGGG 16 V_FOXD3_01_M00130 TRANSFAC - 139702174 139702185 0.0E+00 AAATGTTTATTT 12 V_CEBP_Q2_M00190 TRANSFAC + 139703447 139703460 5.0E-06 AAATTGTGTAAATT 14 V_YY1_Q6_M00793 TRANSFAC - 139702398 139702406 7.0E-06 GCCATCTTG 9 V_HNF3_Q6_01_M01012 TRANSFAC - 139702170 139702187 8.0E-06 AAAAATGTTTATTTGTGT 18 V_HFH4_01_M00742 TRANSFAC - 139702173 139702185 3.0E-06 AAATGTTTATTTG 13 V_PU1_Q4_M01172 TRANSFAC - 139702129 139702147 5.0E-06 CGGGGCTACTTCTTCTTTT 19 V_NFAT2_01_M01748 TRANSFAC - 139703480 139703488 3.0E-06 ATGGAAAAA 9 V_TCFAP2E_04_M02926 TRANSFAC - 139703292 139703305 6.0E-06 CTTTTAAAAAAAAA 14 V_REX1_01_M01695 TRANSFAC + 139703558 139703567 8.0E-06 TTAGCCATTT 10 V_WT1_Q6_01_M02036 TRANSFAC - 139701946 139701955 4.0E-06 CGCCCCCGCC 10 V_ELF4_04_M02850 TRANSFAC - 139703289 139703305 2.0E-06 CTTTTAAAAAAAAAGGC 17 V_SOX13_03_M02797 TRANSFAC - 139703453 139703468 8.0E-06 TCGAGGACAATTTACA 16 V_TCF3_04_M02816 TRANSFAC - 139703433 139703449 5.0E-06 TTTATAACAAAGGAATG 17 V_FOXA2_02_M02853 TRANSFAC - 139703436 139703450 2.0E-06 ATTTATAACAAAGGA 15 V_ZFP105_03_M02827 TRANSFAC - 139703289 139703303 9.0E-06 TTTAAAAAAAAAGGC 15 V_ZFP410_03_M02832 TRANSFAC - 139703368 139703384 2.0E-06 AGAAATGGGATGTCTCC 17 V_TCFAP2C_03_M02821 TRANSFAC + 139701908 139701922 9.0E-06 TGTCCCTGGGGCAAG 15 V_E4BP4_01_M00045 TRANSFAC - 139703094 139703105 1.0E-06 CATTATGTAATC 12 V_SOX7_04_M02911 TRANSFAC + 139703443 139703464 4.0E-06 TTATAAATTGTGTAAATTGTCC 22 V_SOX7_04_M02911 TRANSFAC + 139703452 139703473 3.0E-06 GTGTAAATTGTCCTCGACCTCT 22 V_AP2BETA_Q3_M01858 TRANSFAC + 139702785 139702800 1.0E-06 GCGGCGGGCCGGGGGG 16 V_HNF3_Q6_M00791 TRANSFAC + 139702172 139702184 2.0E-06 ACAAATAAACATT 13 V_SOX18_03_M02801 TRANSFAC + 139703435 139703450 4.0E-06 TTCCTTTGTTATAAAT 16 V_YY1_Q6_02_M01035 TRANSFAC - 139702399 139702409 7.0E-06 GCCGCCATCTT 11 V_REX1_03_M01744 TRANSFAC + 139702399 139702410 1.0E-06 AAGATGGCGGCG 12 V_TCF7_03_M02817 TRANSFAC - 139703433 139703449 6.0E-06 TTTATAACAAAGGAATG 17 V_XFD2_01_M00268 TRANSFAC + 139702173 139702186 2.0E-06 CAAATAAACATTTT 14 V_HFH1_01_M00129 TRANSFAC - 139702174 139702185 0.0E+00 AAATGTTTATTT 12 V_NCX_02_M01420 TRANSFAC - 139703440 139703456 8.0E-06 TACACAATTTATAACAA 17 V_TBP_06_M02814 TRANSFAC + 139703292 139703307 8.0E-06 TTTTTTTTTAAAAGAA 16 V_TBP_06_M02814 TRANSFAC - 139703292 139703307 3.0E-06 TTCTTTTAAAAAAAAA 16 V_HIC1_02_M01072 TRANSFAC + 139703072 139703086 9.0E-06 CCCGGCTGCCCGGCC 15 V_SOX11_03_M02795 TRANSFAC - 139703433 139703449 0.0E+00 TTTATAACAAAGGAATG 17 V_ZFP691_04_M02937 TRANSFAC - 139703390 139703406 8.0E-06 TAAATGACTCCTCCTTC 17 V_VBP_01_M00228 TRANSFAC + 139703095 139703104 1.0E-06 ATTACATAAT 10 V_VBP_01_M00228 TRANSFAC - 139703095 139703104 8.0E-06 ATTATGTAAT 10 V_HFH8_01_M00294 TRANSFAC - 139702173 139702185 0.0E+00 AAATGTTTATTTG 13 V_YY1_03_M02044 TRANSFAC - 139702398 139702409 1.0E-06 GCCGCCATCTTG 12 V_MTF1_06_M02882 TRANSFAC - 139703291 139703304 5.0E-06 TTTTAAAAAAAAAG 14 V_CNOT3_01_M01253 TRANSFAC + 139702615 139702624 8.0E-06 GGCCGCGCCC 10 V_FOXL1_02_M02857 TRANSFAC - 139703436 139703451 1.0E-06 AATTTATAACAAAGGA 16 V_ZFP206_01_M01742 TRANSFAC + 139702309 139702319 0.0E+00 TGCGCATGCGC 11 V_NRF1_Q6_M00652 TRANSFAC + 139702305 139702314 6.0E-06 CGCGTGCGCA 10 V_NRF1_Q6_M00652 TRANSFAC - 139702309 139702318 2.0E-06 CGCATGCGCA 10 V_TCFAP2A_03_M02819 TRANSFAC + 139701908 139701922 6.0E-06 TGTCCCTGGGGCAAG 15 V_SRF_06_M02916 TRANSFAC - 139703288 139703304 1.0E-06 TTTTAAAAAAAAAGGCG 17 V_SRF_06_M02916 TRANSFAC - 139703289 139703305 0.0E+00 CTTTTAAAAAAAAAGGC 17 V_HFH3_01_M00289 TRANSFAC - 139702169 139702181 3.0E-06 GTTTATTTGTGTA 13 V_HFH3_01_M00289 TRANSFAC - 139702173 139702185 5.0E-06 AAATGTTTATTTG 13 V_FOXJ2_01_M00422 TRANSFAC + 139702170 139702187 0.0E+00 ACACAAATAAACATTTTT 18 V_SOX4_01_M01308 TRANSFAC - 139703437 139703444 1.0E-05 AACAAAGG 8 V_HLF_01_M00260 TRANSFAC + 139703095 139703104 1.0E-06 ATTACATAAT 10 V_HLF_01_M00260 TRANSFAC - 139703095 139703104 5.0E-06 ATTATGTAAT 10 V_SOX2_Q6_M01272 TRANSFAC + 139703433 139703448 5.0E-06 CATTCCTTTGTTATAA 16 V_SOX12_03_M02796 TRANSFAC + 139703437 139703450 8.0E-06 CCTTTGTTATAAAT 14 V_CEBPE_01_M01772 TRANSFAC + 139703095 139703104 7.0E-06 ATTACATAAT 10 V_CEBPE_01_M01772 TRANSFAC - 139703095 139703104 2.0E-06 ATTATGTAAT 10 V_SMAD1_01_M01590 TRANSFAC - 139703436 139703447 2.0E-06 TATAACAAAGGA 12 V_CEBPA_Q6_M01866 TRANSFAC + 139703447 139703459 3.0E-06 AAATTGTGTAAAT 13 V_NANOG_02_M01247 TRANSFAC - 139703432 139703451 6.0E-06 AATTTATAACAAAGGAATGG 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.