Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ZNF416 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55659 zinc finger protein 416 chr19 - 58089743 - 58095243 58090243 Transcription Factor Binding Sites   Download all TFBS in the ZNF416 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 58090635 58090652 8.0E-06 ATTGTAAATGTTTCCTAT 18 CENPB_CENPB_full_monomeric_15_1 SELEX + 58090285 58090299 9.0E-06 ACCGTATGCAACAAA 15 GATA5_GATA_DBD_monomeric_8_1 SELEX + 58090560 58090567 7.0E-06 AGATAAGA 8 GATA4_GATA_DBD_monomeric_8_1 SELEX + 58090560 58090567 7.0E-06 AGATAAGA 8 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 58090637 58090650 6.0E-06 AGGAAACATTTACA 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 58090637 58090650 1.0E-05 AGGAAACATTTACA 14 ELK1_ETS_full_dimeric_17_1 SELEX + 58089992 58090008 7.0E-06 GATTTCCGGCGGAGAGG 17 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 58090637 58090650 8.0E-06 AGGAAACATTTACA 14 znf143_MA0088.1 JASPAR - 58090354 58090373 0.0E+00 CATTACCCATAATGCCGAGC 20 GATA3_GATA_full_monomeric_8_1 SELEX + 58090560 58090567 7.0E-06 AGATAAGA 8 ZNF143_C2H2_DBD_monomeric_16_1 SELEX - 58090355 58090370 2.0E-06 TACCCATAATGCCGAG 16 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 58090637 58090650 1.0E-05 TGTAAATGTTTCCT 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 58090637 58090650 6.0E-06 AGGAAACATTTACA 14 V_GATA1_Q6_M02004 TRANSFAC + 58090555 58090569 9.0E-06 GGTTAAGATAAGAGG 15 V_DUXL_01_M01390 TRANSFAC - 58090319 58090335 3.0E-06 GGAGCCAATCAACGTTC 17 V_AP2_Q6_M00189 TRANSFAC + 58095118 58095129 9.0E-06 CTCCCGCAGGAG 12 V_STAT4_Q4_M01666 TRANSFAC + 58090377 58090390 4.0E-06 TTCTCAGAAGCCCA 14 V_STAT4_Q4_M01666 TRANSFAC + 58095043 58095056 6.0E-06 TTCACAGAATAGCC 14 V_BEL1_B_M00312 TRANSFAC - 58095153 58095180 9.0E-06 AGGAAGCTGAGGCCAGATCCACACCGAC 28 V_STAT5A_02_M00460 TRANSFAC + 58090362 58090385 9.0E-06 TTATGGGTAATGTAGTTCTCAGAA 24 V_STAT5A_02_M00460 TRANSFAC - 58090362 58090385 0.0E+00 TTCTGAGAACTACATTACCCATAA 24 V_DUXBL_01_M02968 TRANSFAC - 58090319 58090335 3.0E-06 GGAGCCAATCAACGTTC 17 V_IRF3_06_M02871 TRANSFAC - 58095035 58095048 4.0E-06 TGTGAAAGGAGCGA 14 V_ELK1_02_M00025 TRANSFAC - 58089991 58090004 3.0E-06 TCCGCCGGAAATCC 14 V_STAF_02_M00264 TRANSFAC - 58090352 58090372 0.0E+00 ATTACCCATAATGCCGAGCGC 21 V_GATA1_04_M00128 TRANSFAC + 58090557 58090569 4.0E-06 TTAAGATAAGAGG 13 V_SIRT6_01_M01797 TRANSFAC + 58090560 58090567 7.0E-06 AGATAAGA 8 V_EBNA1_01_M01745 TRANSFAC + 58090634 58090649 7.0E-06 GATTGTAAATGTTTCC 16 V_NFY_01_M00287 TRANSFAC - 58090321 58090336 9.0E-06 CGGAGCCAATCAACGT 16 V_P300_01_M00033 TRANSFAC + 58090541 58090554 7.0E-06 GAAGGGAGTGTCTG 14 V_ZIC1_05_M02939 TRANSFAC + 58090608 58090622 6.0E-06 TCACGCAGCAGGCTT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.