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RNPC3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55599 RNA-binding region (RNP1, RRM) containing 3 chr1 + 104063577 - 104069077 104068577 Transcription Factor Binding Sites   Download all TFBS in the RNPC3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 104066080 104066092 3.0E-06 GTAAATATAAAAG 13 PITX3_homeodomain_DBD_monomeric_9_1 SELEX - 104068081 104068089 5.0E-06 CTTAATCCC 9 SPIC_ETS_full_monomeric_14_1 SELEX - 104069011 104069024 5.0E-06 AAAAAGAGGTAGGA 14 GRHL1_CP2_full_dimeric_12_1 SELEX + 104072718 104072729 8.0E-06 AAAACCGGTCTC 12 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 104068606 104068619 4.0E-06 AAAAAATATTTCTC 14 PITX1_homeodomain_full_monomeric_8_1 SELEX - 104068081 104068088 1.0E-05 TTAATCCC 8 RFX2_RFX_DBD_dimeric_15_1 SELEX - 104067108 104067122 6.0E-06 GGTTGCAATGCAAAA 15 Sox17_HMG_DBD_dimeric_15_2 SELEX - 104072646 104072660 5.0E-06 ATGAAACTGATTCAT 15 ELF3_ETS_full_monomeric_13_1 SELEX - 104068569 104068581 9.0E-06 AACCAGGAAATAC 13 GRHL1_CP2_DBD_dimer-of-dimers_17_1 SELEX + 104067086 104067102 8.0E-06 AACTGGTCTTTCTGCTT 17 FIGLA_bHLH_DBD_dimeric_10_1 SELEX + 104072441 104072450 1.0E-06 ACCACCTGTT 10 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 104068472 104068486 6.0E-06 TTTAAATCATTAGCA 15 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 104068472 104068486 7.0E-06 TGCTAATGATTTAAA 15 znf143_MA0088.1 JASPAR + 104068577 104068596 8.0E-06 TGGTTTCCAGAATCCTTAGC 20 NFATC1_NFAT_full_dimeric_20_1 SELEX + 104068601 104068620 2.0E-06 GGCGGAAAAAATATTTCTCC 20 PBX1_MA0070.1 JASPAR - 104068393 104068404 6.0E-06 TTGTCAATCAAA 12 Gata1_MA0035.2 JASPAR + 104068867 104068877 1.0E-05 TCAGATAAGGG 11 HNF1B_homeodomain_full_dimeric_13_1 SELEX - 104068473 104068485 8.0E-06 GCTAATGATTTAA 13 Foxd3_MA0041.1 JASPAR - 104068605 104068616 4.0E-06 AAATATTTTTTC 12 RHOXF1_homeodomain_full_monomeric_8_1 SELEX - 104068081 104068088 1.0E-05 TTAATCCC 8 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 104069093 104069107 7.0E-06 GAAAAGGGCAAGTGA 15 FEV_MA0156.1 JASPAR - 104068571 104068578 1.0E-05 CAGGAAAT 8 GSC_homeodomain_full_monomeric_10_1 SELEX - 104068080 104068089 4.0E-06 CTTAATCCCT 10 EHF_ETS_full_monomeric_12_1 SELEX - 104068570 104068581 4.0E-06 AACCAGGAAATA 12 ELF5_ETS_full_monomeric_11_1 SELEX - 104068570 104068580 6.0E-06 ACCAGGAAATA 11 GSC2_homeodomain_DBD_monomeric_10_1 SELEX - 104068080 104068089 7.0E-06 CTTAATCCCT 10 ELF3_ETS_DBD_monomeric_12_1 SELEX - 104068570 104068581 3.0E-06 AACCAGGAAATA 12 GRHL1_CP2_DBD_dimeric_10_1 SELEX + 104072719 104072728 6.0E-06 AAACCGGTCT 10 IRF3_IRF_full_trimeric_21_1 SELEX - 104068376 104068396 3.0E-06 CAAAGAAGGAAACAGGAACCC 21 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 104068472 104068486 8.0E-06 TTTAAATCATTAGCA 15 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 104068472 104068486 9.0E-06 TGCTAATGATTTAAA 15 NRF1_NRF_full_dimeric_12_1 SELEX + 104068312 104068323 5.0E-06 CGCACATGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 104068312 104068323 8.0E-06 TGCGCATGTGCG 12 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 104066080 104066092 7.0E-06 GTAAATATAAAAG 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 104068671 104068683 9.0E-06 AGAAGCAAAAACA 13 V_ELF5_02_M01980 TRANSFAC - 104068570 104068579 3.0E-06 CCAGGAAATA 10 V_NFAT_Q4_01_M00935 TRANSFAC + 104072698 104072707 3.0E-06 GTGGAAAAAT 10 V_ELF5_03_M02057 TRANSFAC - 104068570 104068579 2.0E-06 CCAGGAAATA 10 V_OSR1_03_M02784 TRANSFAC - 104067095 104067110 9.0E-06 AAAAACAGAAGCAGAA 16 V_MEIS1BHOXA9_02_M00421 TRANSFAC + 104067962 104067975 6.0E-06 TGACAGAATAACTG 14 V_XVENT1_01_M00445 TRANSFAC + 104068431 104068443 9.0E-06 GGCCAATTTTTGC 13 V_GAF_Q6_M01209 TRANSFAC - 104072614 104072624 7.0E-06 CAGATTCTCAT 11 V_MYOD_Q6_M00184 TRANSFAC + 104072441 104072450 7.0E-06 ACCACCTGTT 10 V_YY1_02_M00069 TRANSFAC - 104068683 104068702 8.0E-06 GAGCTGCCATTTTCCTTGGA 20 V_FOXD3_01_M00130 TRANSFAC - 104068605 104068616 2.0E-06 AAATATTTTTTC 12 V_ESE1_01_M01977 TRANSFAC - 104068570 104068579 3.0E-06 CCAGGAAATA 10 V_SP1_Q6_01_M00931 TRANSFAC - 104068129 104068138 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 104068146 104068155 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 104068265 104068274 4.0E-06 GGGGCGGGGC 10 V_SP1_Q6_01_M00931 TRANSFAC - 104068282 104068291 4.0E-06 GGGGCGGGGC 10 V_OCT1_Q5_01_M00930 TRANSFAC + 104067106 104067116 5.0E-06 TTTTTTGCATT 11 V_OCT1_Q5_01_M00930 TRANSFAC + 104067127 104067137 4.0E-06 AAATTTTCATA 11 V_EOMES_03_M02747 TRANSFAC - 104067128 104067144 5.0E-06 GTTTAGGTATGAAAATT 17 V_IRF_Q6_01_M00972 TRANSFAC - 104068666 104068676 6.0E-06 AAAACAGAAAT 11 V_SOX11_04_M02899 TRANSFAC + 104072703 104072716 2.0E-06 AAAATTGTCTTGCA 14 V_IRF3_05_M02767 TRANSFAC + 104068960 104068973 2.0E-06 TAAAATGGAAACGA 14 V_STAT6_01_M00494 TRANSFAC + 104068022 104068029 7.0E-06 TATTTCCA 8 V_OCT_C_M00210 TRANSFAC + 104067126 104067138 9.0E-06 GAAATTTTCATAC 13 V_SP1_02_M01303 TRANSFAC - 104072675 104072685 5.0E-06 GGGGTGGGGAG 11 V_SP1_02_M01303 TRANSFAC - 104072682 104072692 5.0E-06 GGGGTGGGGGG 11 V_TCFAP2E_04_M02926 TRANSFAC + 104067885 104067898 7.0E-06 TTCAAGAAAAAAGT 14 V_TAL1_GATA1_01_M02243 TRANSFAC + 104068858 104068875 3.0E-06 CGGGTCCTGTCAGATAAG 18 V_ELF4_04_M02850 TRANSFAC - 104063942 104063958 2.0E-06 AGTCAAACAAAAAACAC 17 V_ZNF219_01_M01122 TRANSFAC + 104072680 104072691 2.0E-06 CACCCCCCACCC 12 V_POU3F2_01_M00463 TRANSFAC + 104066104 104066117 0.0E+00 ATGCATTCATTCAT 14 V_PR_Q2_M00960 TRANSFAC + 104068006 104068015 4.0E-06 GTAAGAACAT 10 V_ZFP105_03_M02827 TRANSFAC - 104063943 104063957 5.0E-06 GTCAAACAAAAAACA 15 V_TBX18_01_M01262 TRANSFAC - 104067122 104067140 3.0E-06 AGGTATGAAAATTTCTCCG 19 V_NFAT_Q6_M00302 TRANSFAC + 104072696 104072707 6.0E-06 CTGTGGAAAAAT 12 V_RSRFC4_Q2_M00407 TRANSFAC + 104066077 104066093 7.0E-06 GTGGTAAATATAAAAGT 17 V_PXRRXR_02_M01153 TRANSFAC - 104067900 104067907 1.0E-05 AGAGTTCA 8 V_SP1_Q6_M00196 TRANSFAC - 104068128 104068140 7.0E-06 GCGGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC - 104068145 104068157 7.0E-06 GCGGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC - 104068264 104068276 7.0E-06 GCGGGGCGGGGCG 13 V_SP1_Q6_M00196 TRANSFAC - 104068281 104068293 7.0E-06 GCGGGGCGGGGCG 13 V_ARID3A_02_M02839 TRANSFAC - 104067128 104067142 9.0E-06 TTAGGTATGAAAATT 15 V_MAZ_Q6_01_M02023 TRANSFAC - 104072673 104072686 1.0E-05 GGGGGTGGGGAGAA 14 V_HNF1_Q6_01_M01011 TRANSFAC - 104067977 104067997 9.0E-06 GATGGTAAAATATAAAGCTAG 21 V_EHF_02_M01974 TRANSFAC - 104068570 104068579 3.0E-06 CCAGGAAATA 10 V_JUNDM2_04_M02876 TRANSFAC + 104069071 104069086 9.0E-06 CTGGATTAGTCATAGC 16 V_YY1_Q6_02_M01035 TRANSFAC - 104068690 104068700 2.0E-06 GCTGCCATTTT 11 V_YY1_Q6_02_M01035 TRANSFAC - 104068961 104068971 7.0E-06 GTTTCCATTTT 11 V_OCT1_04_M00138 TRANSFAC - 104067122 104067144 5.0E-06 GTTTAGGTATGAAAATTTCTCCG 23 V_OCT1_04_M00138 TRANSFAC - 104067982 104068004 1.0E-05 GTATTTAGATGGTAAAATATAAA 23 V_REX1_03_M01744 TRANSFAC + 104068690 104068701 7.0E-06 AAAATGGCAGCT 12 Tal1_Gata1_MA0140.1 JASPAR + 104068858 104068875 3.0E-06 CGGGTCCTGTCAGATAAG 18 V_GATA1_09_M02254 TRANSFAC + 104068867 104068877 1.0E-05 TCAGATAAGGG 11 V_RREB1_01_M00257 TRANSFAC + 104072677 104072690 7.0E-06 CCCCACCCCCCACC 14 V_ARID3A_04_M02735 TRANSFAC + 104069019 104069035 2.0E-06 CTTTTTTATCAAAATAT 17 V_TBP_06_M02814 TRANSFAC - 104067978 104067993 7.0E-06 GTAAAATATAAAGCTA 16 V_OCT4_02_M01124 TRANSFAC + 104072706 104072720 5.0E-06 ATTGTCTTGCACAAA 15 V_SOX11_03_M02795 TRANSFAC - 104063942 104063958 1.0E-05 AGTCAAACAAAAAACAC 17 V_BLIMP1_Q6_M01066 TRANSFAC - 104068058 104068073 2.0E-06 GGGAAAGTGAATTGGC 16 V_OCT_Q6_M00795 TRANSFAC + 104067106 104067116 5.0E-06 TTTTTTGCATT 11 V_OCT_Q6_M00795 TRANSFAC + 104067127 104067137 6.0E-06 AAATTTTCATA 11 V_FOXO1_Q5_M01216 TRANSFAC - 104067102 104067110 1.0E-05 AAAAACAGA 9 V_FOXO1_Q5_M01216 TRANSFAC - 104068669 104068677 1.0E-05 AAAAACAGA 9 V_GATA4_Q3_M00632 TRANSFAC + 104066084 104066095 4.0E-06 ATATAAAAGTGA 12 V_TFIII_Q6_M00706 TRANSFAC - 104069012 104069020 1.0E-05 AGAGGTAGG 9 V_SP4_Q5_M01273 TRANSFAC + 104068129 104068139 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC + 104068146 104068156 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC + 104068265 104068275 2.0E-06 GCCCCGCCCCG 11 V_SP4_Q5_M01273 TRANSFAC + 104068282 104068292 2.0E-06 GCCCCGCCCCG 11 V_ELF1_Q6_M00746 TRANSFAC - 104068571 104068582 9.0E-06 AAACCAGGAAAT 12 V_EHF_03_M02052 TRANSFAC - 104068570 104068579 7.0E-06 CCAGGAAATA 10 V_CIZ_01_M00734 TRANSFAC + 104068605 104068613 3.0E-06 GAAAAAATA 9 V_POU5F1_01_M01307 TRANSFAC - 104067107 104067116 0.0E+00 AATGCAAAAA 10 V_GATA1_04_M00128 TRANSFAC + 104068866 104068878 2.0E-06 GTCAGATAAGGGG 13 V_FOXL1_02_M02857 TRANSFAC - 104063945 104063960 1.0E-06 ACAGTCAAACAAAAAA 16 V_TAL1ALPHAE47_01_M00066 TRANSFAC - 104072438 104072453 8.0E-06 TCTAACAGGTGGTGGT 16 V_E2F3_03_M02743 TRANSFAC + 104068885 104068899 6.0E-06 GTAAGGGCGCGCCCC 15 V_TCF7L2_04_M02922 TRANSFAC + 104072642 104072657 5.0E-06 CGAGATGAATCAGTTT 16 V_ZFP206_01_M01742 TRANSFAC - 104068313 104068323 7.0E-06 TGCGCATGTGC 11 V_E2F2_03_M02742 TRANSFAC + 104068885 104068899 8.0E-06 GTAAGGGCGCGCCCC 15 V_NRF1_Q6_M00652 TRANSFAC + 104068314 104068323 9.0E-06 CACATGCGCA 10 V_PBX1_02_M00124 TRANSFAC - 104068391 104068405 6.0E-06 GTTGTCAATCAAAGA 15 V_RSRFC4_01_M00026 TRANSFAC - 104066077 104066092 8.0E-06 CTTTTATATTTACCAC 16 V_LMO2COM_02_M00278 TRANSFAC + 104068868 104068876 3.0E-06 CAGATAAGG 9 V_ESE1_02_M02055 TRANSFAC - 104068570 104068579 3.0E-06 CCAGGAAATA 10 V_ZFP281_01_M01597 TRANSFAC - 104072677 104072687 4.0E-06 GGGGGGTGGGG 11 V_HSF_Q6_M00641 TRANSFAC - 104068459 104068471 7.0E-06 TTCCAGGGGTCTC 13 V_IRF1_Q6_01_M01881 TRANSFAC + 104068664 104068677 2.0E-06 CGATTTCTGTTTTT 14 V_ZFP281_04_M02831 TRANSFAC + 104072676 104072690 0.0E+00 TCCCCACCCCCCACC 15 V_SRF_06_M02916 TRANSFAC - 104063942 104063958 8.0E-06 AGTCAAACAAAAAACAC 17 V_SRF_06_M02916 TRANSFAC + 104067884 104067900 8.0E-06 ATTCAAGAAAAAAGTCT 17 V_SOX15_04_M02903 TRANSFAC - 104068467 104068481 7.0E-06 ATGATTTAAATTCCA 15 V_HNF4_01_M00134 TRANSFAC - 104067137 104067155 6.0E-06 AGAGAATCAAAGTTTAGGT 19 V_SOX5_07_M02909 TRANSFAC + 104072700 104072716 0.0E+00 GGAAAAATTGTCTTGCA 17 V_TCF3_05_M02920 TRANSFAC - 104067982 104067996 6.0E-06 ATGGTAAAATATAAA 15 V_TCF3_05_M02920 TRANSFAC + 104068601 104068615 1.0E-06 GGCGGAAAAAATATT 15 V_FEV_01_M02269 TRANSFAC - 104068571 104068578 1.0E-05 CAGGAAAT 8 V_STAT1_Q6_M01823 TRANSFAC - 104068359 104068368 8.0E-06 TTCAGGGAAA 10 V_GLIS2_04_M02863 TRANSFAC - 104069021 104069034 1.0E-05 TATTTTGATAAAAA 14 V_STAT1_05_M01260 TRANSFAC - 104068350 104068371 8.0E-06 CACTTCAGGGAAAGAAGGTTGA 22 V_NANOG_02_M01247 TRANSFAC + 104069115 104069134 1.0E-06 AAAGCAGAAGAATGGAAATT 20 V_ESE1_Q3_M01214 TRANSFAC - 104068570 104068579 3.0E-06 CCAGGAAATA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.