Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

SVOP Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55530 SV2 related protein homolog (rat) chr12 - 109458345 - 109463845 109458845 Transcription Factor Binding Sites   Download all TFBS in the SVOP promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 109456377 109456392 7.0E-06 GTGCATAATATACGAA 16 MYF6_bHLH_full_dimeric_10_1 SELEX + 109458795 109458804 9.0E-06 AGCAGCTGTT 10 POU4F3_POU_DBD_monomeric_16_1 SELEX + 109456377 109456392 5.0E-06 GTGCATAATATACGAA 16 Ascl2_bHLH_DBD_dimeric_10_1 SELEX + 109458795 109458804 3.0E-06 AGCAGCTGTT 10 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 109458795 109458804 1.0E-06 AACAGCTGCT 10 Tcf21_bHLH_DBD_dimeric_14_1 SELEX - 109458793 109458806 9.0E-06 CGAACAGCTGCTGC 14 Klf12_C2H2_DBD_monomeric_15_1 SELEX - 109456388 109456402 9.0E-06 AACCACACCCTTCGT 15 MSC_bHLH_full_dimeric_10_1 SELEX - 109458795 109458804 4.0E-06 AACAGCTGCT 10 V_E2A_Q6_01_M02088 TRANSFAC - 109458793 109458805 2.0E-06 GAACAGCTGCTGC 13 V_AML_Q6_M00769 TRANSFAC + 109456391 109456405 6.0E-06 AAGGGTGTGGTTTAA 15 V_NRSF_Q4_M01028 TRANSFAC - 109458903 109458921 8.0E-06 CCTCTCCCCGCGCAGCTCG 19 V_CBF_02_M01080 TRANSFAC + 109456391 109456406 7.0E-06 AAGGGTGTGGTTTAAA 16 V_GKLF_02_M01588 TRANSFAC - 109456390 109456401 3.0E-06 ACCACACCCTTC 12 V_AP4_Q6_01_M00927 TRANSFAC - 109458796 109458804 1.0E-05 AACAGCTGC 9 V_ELF4_04_M02850 TRANSFAC + 109456400 109456416 2.0E-06 GTTTAAAAAACATCTAA 17 V_ZFP105_03_M02827 TRANSFAC + 109456401 109456415 9.0E-06 TTTAAAAAACATCTA 15 V_PXRRXR_02_M01153 TRANSFAC + 109458948 109458955 1.0E-05 AGAGTTCA 8 V_SFPI1_04_M02896 TRANSFAC + 109458532 109458545 1.0E-06 TAAATTCAAGAAAC 14 V_KLF7_03_M02773 TRANSFAC - 109456389 109456404 7.0E-06 TAAACCACACCCTTCG 16 V_ETS1_B_M00339 TRANSFAC - 109458503 109458517 1.0E-05 AGAGGAAGGAATTAG 15 V_MYF6_03_M02781 TRANSFAC + 109458791 109458806 9.0E-06 GAGCAGCAGCTGTTCG 16 V_SRF_06_M02916 TRANSFAC + 109456400 109456416 1.0E-06 GTTTAAAAAACATCTAA 17 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 109456396 109456403 1.0E-05 TGTGGTTT 8

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.