Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PRCC Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 5546 papillary renal cell carcinoma (translocation-associated) chr1 + 156732273 - 156737773 156737273 Transcription Factor Binding Sites   Download all TFBS in the PRCC promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 156736268 156736280 3.0E-06 GTAAACAAGAAAA 13 PITX3_homeodomain_DBD_monomeric_9_1 SELEX - 156736564 156736572 8.0E-06 GTTAATCCC 9 FOXF2_MA0030.1 JASPAR + 156736263 156736276 6.0E-06 GATGGGTAAACAAG 14 POU2F3_POU_DBD_monomeric_9_1 SELEX + 156736839 156736847 9.0E-06 TATTCTAAT 9 FOXO1_forkhead_DBD_monomeric_8_1 SELEX + 156736268 156736275 7.0E-06 GTAAACAA 8 EBF1_MA0154.1 JASPAR + 156737015 156737024 6.0E-06 ACCCTAGGGA 10 MEF2A_MADS_DBD_dimeric_12_1 SELEX - 156736749 156736760 6.0E-06 TCTAATAATAAG 12 GCM1_GCM_full_dimeric_16_1 SELEX + 156737732 156737747 1.0E-06 ATGCTGGCGCCAGCCT 16 GCM1_GCM_full_dimeric_16_1 SELEX - 156737732 156737747 5.0E-06 AGGCTGGCGCCAGCAT 16 POU2F2_POU_DBD_monomeric_11_1 SELEX + 156736838 156736848 4.0E-06 TTATTCTAATT 11 Pou2f2_POU_DBD_monomeric_9_1 SELEX + 156736839 156736847 9.0E-06 TATTCTAAT 9 PITX1_homeodomain_full_monomeric_8_1 SELEX - 156736564 156736571 1.0E-05 TTAATCCC 8 Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 SELEX + 156737718 156737733 2.0E-06 CTCCGCCCCCTCAGAT 16 Ar_MA0007.1 JASPAR + 156737019 156737040 9.0E-06 TAGGGAACTTCAAGTACCGAAA 22 POU3F3_POU_DBD_monomeric_13_1 SELEX + 156736837 156736849 5.0E-06 TTTATTCTAATTC 13 MEF2A_MA0052.1 JASPAR + 156736750 156736759 9.0E-06 TTATTATTAG 10 NFAT5_NFAT_DBD_dimeric_14_1 SELEX + 156738826 156738839 0.0E+00 GTGGAAAAATACAA 14 RARA_nuclearreceptor_full_dimeric_17_1 SELEX + 156736879 156736895 8.0E-06 AGTTCATTTACAGATCA 17 POU3F1_POU_DBD_monomeric_12_1 SELEX + 156736838 156736849 7.0E-06 TTATTCTAATTC 12 RHOXF1_homeodomain_full_monomeric_8_1 SELEX - 156736564 156736571 1.0E-05 TTAATCCC 8 GSC_homeodomain_full_monomeric_10_1 SELEX - 156736563 156736572 4.0E-06 GTTAATCCCT 10 POU2F1_POU_DBD_monomeric_12_1 SELEX + 156736837 156736848 4.0E-06 TTTATTCTAATT 12 Mafb_bZIP_DBD_dimeric_18_1 SELEX + 156737573 156737590 9.0E-06 GTTGCTTACGCCAGCAGC 18 Mafb_bZIP_DBD_dimeric_18_1 SELEX - 156737573 156737590 5.0E-06 GCTGCTGGCGTAAGCAAC 18 FOXO3_forkhead_full_monomeric_8_1 SELEX + 156736268 156736275 7.0E-06 GTAAACAA 8 POU3F3_POU_DBD_dimeric_12_1 SELEX - 156736746 156736757 8.0E-06 AATAATAAGCAT 12 POU3F2_POU_DBD_monomeric_12_1 SELEX + 156736838 156736849 8.0E-06 TTATTCTAATTC 12 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 156736268 156736280 5.0E-06 GTAAACAAGAAAA 13 DPRX_homeodomain_DBD_monomeric_10_1 SELEX + 156736563 156736572 3.0E-06 AGGGATTAAC 10 V_NFAT_Q4_01_M00935 TRANSFAC - 156736910 156736919 3.0E-06 GAGGAAAATT 10 V_NFAT_Q4_01_M00935 TRANSFAC + 156738826 156738835 3.0E-06 GTGGAAAAAT 10 V_MINI20_B_M00324 TRANSFAC - 156738841 156738861 8.0E-06 CAAAGCCCTCACTCCAGGAGC 21 V_BCL6_Q3_01_M02085 TRANSFAC + 156738781 156738790 4.0E-06 GTTTCTAGAA 10 V_EBF_Q6_M00977 TRANSFAC - 156737015 156737025 8.0E-06 TTCCCTAGGGT 11 V_AR_02_M00953 TRANSFAC + 156737251 156737277 2.0E-06 GGGCTGTGTCCAAAGTGTTCTCTGGAA 27 V_OBOX5_05_M03066 TRANSFAC + 156736560 156736576 3.0E-06 AGAAGGGATTAACCTCA 17 V_ATF5_01_M01295 TRANSFAC - 156738022 156738032 8.0E-06 CATCTCCCTTA 11 V_OBOX1_01_M01450 TRANSFAC + 156736559 156736575 2.0E-06 GAGAAGGGATTAACCTC 17 V_COE1_Q6_M01871 TRANSFAC + 156737015 156737028 6.0E-06 ACCCTAGGGAACTT 14 V_CREB_Q4_M00178 TRANSFAC - 156736717 156736728 9.0E-06 TGTGACGTAAAA 12 V_MEF2_02_M00231 TRANSFAC - 156736745 156736766 6.0E-06 TGCAGGTCTAATAATAAGCATC 22 V_POU2F3_01_M01476 TRANSFAC + 156736836 156736851 5.0E-06 TTTTATTCTAATTCCC 16 V_POU3F2_02_M00464 TRANSFAC + 156736838 156736847 1.0E-05 TTATTCTAAT 10 V_CEBP_Q2_M00190 TRANSFAC - 156736901 156736914 3.0E-06 AAATTGCTTAAAGG 14 V_AP2_Q6_01_M00915 TRANSFAC + 156736642 156736654 4.0E-06 CAGGCCCCAGGCT 13 V_HNF3_Q6_01_M01012 TRANSFAC - 156736262 156736279 5.0E-06 TTTCTTGTTTACCCATCT 18 V_AREB6_04_M00415 TRANSFAC + 156738779 156738787 8.0E-06 CTGTTTCTA 9 V_PU1_Q4_M01172 TRANSFAC + 156737276 156737294 8.0E-06 AAGTTGTAGTTCCTGTATT 19 V_LHX8_01_M01440 TRANSFAC + 156737932 156737948 1.0E-05 CCCTCCAATTGGCGGTG 17 V_TST1_01_M00133 TRANSFAC - 156736838 156736852 1.0E-06 TGGGAATTAGAATAA 15 V_ROAZ_01_M00467 TRANSFAC + 156737693 156737706 3.0E-06 GCGCCCAAGGGTCC 14 V_OBOX5_02_M01480 TRANSFAC + 156736560 156736576 3.0E-06 AGAAGGGATTAACCTCA 17 V_STAF_01_M00262 TRANSFAC + 156736929 156736950 5.0E-06 GCTTCCCAGACTCCCTTTCGTT 22 V_STAF_01_M00262 TRANSFAC + 156737207 156737228 4.0E-06 AACTCCCGCCGTGCCTTGCGCT 22 V_NFAT_Q6_M00302 TRANSFAC - 156736910 156736921 6.0E-06 TTGAGGAAAATT 12 V_NFAT_Q6_M00302 TRANSFAC + 156738824 156738835 0.0E+00 CAGTGGAAAAAT 12 V_XFD3_01_M00269 TRANSFAC + 156736265 156736278 7.0E-06 TGGGTAAACAAGAA 14 V_GMEB1_03_M02761 TRANSFAC + 156736715 156736731 2.0E-06 CCTTTTACGTCACATTT 17 V_RSRFC4_Q2_M00407 TRANSFAC - 156736746 156736762 4.0E-06 GGTCTAATAATAAGCAT 17 V_SREBP_Q6_M01168 TRANSFAC + 156737123 156737137 2.0E-06 CTACTCACCCCAGGT 15 V_SFPI1_04_M02896 TRANSFAC - 156737283 156737296 8.0E-06 CCAATACAGGAACT 14 V_OCT1_04_M00138 TRANSFAC + 156736738 156736760 3.0E-06 ACTCTTAGATGCTTATTATTAGA 23 V_GR_01_M00955 TRANSFAC + 156737251 156737277 0.0E+00 GGGCTGTGTCCAAAGTGTTCTCTGGAA 27 V_SP1SP3_Q4_M01219 TRANSFAC - 156737305 156737315 5.0E-06 CCGCCTCCTCC 11 V_GR_Q6_M00192 TRANSFAC + 156737255 156737273 0.0E+00 TGTGTCCAAAGTGTTCTCT 19 V_SPIB_01_M01204 TRANSFAC - 156737279 156737295 9.0E-06 CAATACAGGAACTACAA 17 V_EBF1_01_M02267 TRANSFAC + 156737015 156737024 6.0E-06 ACCCTAGGGA 10 V_STAF_02_M00264 TRANSFAC + 156737207 156737227 3.0E-06 AACTCCCGCCGTGCCTTGCGC 21 V_PPARA_02_M00518 TRANSFAC - 156736567 156736585 7.0E-06 CCAGGTACTTGAGGTTAAT 19 V_TFIII_Q6_M00706 TRANSFAC + 156736632 156736640 6.0E-06 AGAGGGAGG 9 V_GR_Q6_02_M01836 TRANSFAC + 156737261 156737273 7.0E-06 CAAAGTGTTCTCT 13 V_OTX2_Q3_M01719 TRANSFAC + 156736561 156736573 9.0E-06 GAAGGGATTAACC 13 V_FREAC2_01_M00290 TRANSFAC + 156736263 156736278 4.0E-06 GATGGGTAAACAAGAA 16 V_MINI19_B_M00323 TRANSFAC - 156738841 156738861 9.0E-06 CAAAGCCCTCACTCCAGGAGC 21 V_AP4_01_M00005 TRANSFAC - 156737950 156737967 4.0E-06 AGCCCCAGCGGGGGACCG 18 V_MYOD_Q6_01_M00929 TRANSFAC + 156737468 156737485 7.0E-06 CCCCGCCAGGTGGCGGGG 18 V_OCT2_01_M01368 TRANSFAC + 156736836 156736851 8.0E-06 TTTTATTCTAATTCCC 16 V_CREB_Q2_M00177 TRANSFAC - 156736717 156736728 9.0E-06 TGTGACGTAAAA 12 V_DOBOX5_01_M01463 TRANSFAC + 156736560 156736576 1.0E-06 AGAAGGGATTAACCTCA 17 V_FOXO3_01_M00477 TRANSFAC - 156736265 156736278 3.0E-06 TTCTTGTTTACCCA 14 V_RSRFC4_01_M00026 TRANSFAC + 156736747 156736762 5.0E-06 TGCTTATTATTAGACC 16 V_PLZF_02_M01075 TRANSFAC + 156738854 156738882 2.0E-06 GGGCTTTGGAGATAAAGGAGAGATTAAGC 29 V_EGR1_06_M02744 TRANSFAC + 156737719 156737732 4.0E-06 TCCGCCCCCTCAGA 14 V_OCT1_07_M00248 TRANSFAC + 156736837 156736848 1.0E-06 TTTATTCTAATT 12 V_GSC_01_M01428 TRANSFAC - 156736560 156736576 4.0E-06 TGAGGTTAATCCCTTCT 17 V_PR_02_M00957 TRANSFAC + 156737251 156737277 4.0E-06 GGGCTGTGTCCAAAGTGTTCTCTGGAA 27 V_PITX2_01_M01447 TRANSFAC + 156736560 156736576 2.0E-06 AGAAGGGATTAACCTCA 17 V_FREAC4_01_M00292 TRANSFAC + 156736263 156736278 5.0E-06 GATGGGTAAACAAGAA 16 V_MEF2A_05_M01301 TRANSFAC + 156736748 156736759 5.0E-06 GCTTATTATTAG 12 V_UF1H3BETA_Q6_M01068 TRANSFAC - 156737744 156737757 6.0E-06 GGCGGGGGAAAGGC 14 V_HMEF2_Q6_M00406 TRANSFAC - 156736746 156736761 9.0E-06 GTCTAATAATAAGCAT 16 V_OBOX5_01_M01381 TRANSFAC + 156736560 156736576 4.0E-06 AGAAGGGATTAACCTCA 17 V_SREBP1_Q5_M01173 TRANSFAC + 156737123 156737137 6.0E-06 CTACTCACCCCAGGT 15 V_SREBP1_Q5_M01173 TRANSFAC - 156738843 156738857 9.0E-06 GCCCTCACTCCAGGA 15 V_OTX1_01_M01366 TRANSFAC + 156736560 156736576 3.0E-06 AGAAGGGATTAACCTCA 17 V_OBOX6_06_M03067 TRANSFAC - 156736560 156736576 4.0E-06 TGAGGTTAATCCCTTCT 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.