Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

HJURP Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55355 Holliday junction recognition protein chr2 - 234762712 - 234768212 234763212 Transcription Factor Binding Sites   Download all TFBS in the HJURP promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 234766284 234766302 0.0E+00 CGGCCAGTAGAGGGCACTG 19 FOXO4_forkhead_DBD_dimeric_14_1 SELEX + 234766449 234766462 1.0E-06 GTAAATATGTTTCT 14 FOXO4_forkhead_DBD_dimeric_14_1 SELEX - 234766449 234766462 1.0E-06 AGAAACATATTTAC 14 HINFP1_C2H2_full_dimeric_19_1 SELEX + 234763009 234763027 1.0E-06 GCGGACCGGCGGGGGCCGC 19 HINFP1_C2H2_full_dimeric_19_1 SELEX - 234763009 234763027 1.0E-06 GCGGCCCCCGCCGGTCCGC 19 THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX + 234760904 234760923 9.0E-06 GTGACCTTGGGGAGGGTTAC 20 THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX - 234760904 234760923 7.0E-06 GTAACCCTCCCCAAGGTCAC 20 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 234766577 234766593 4.0E-06 ATAAATTATCGCAAACA 17 IRX2_homeodomain_DBD_dimeric_12_1 SELEX - 234766441 234766452 1.0E-06 TTACATGACAAC 12 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 234766757 234766771 6.0E-06 TAACTGAAGTAATTA 15 ZNF435_C2H2_full_dimeric_18_1 SELEX + 234760947 234760964 1.0E-06 TGTATTATCAGAGCCCCT 18 Bhlhb2_bHLH_DBD_dimeric_10_1 SELEX + 234760899 234760908 6.0E-06 GGCACGTGAC 10 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 234766446 234766456 8.0E-06 CATGTAAATAT 11 EWSR1-FLI1_MA0149.1 JASPAR - 234763223 234763240 1.0E-06 GAGAGGAAGGCAGGGAGG 18 PDX1_homeodomain_DBD_monomeric_8_1 SELEX + 234766765 234766772 5.0E-06 GTAATTAA 8 Esrrb_MA0141.1 JASPAR - 234760905 234760916 5.0E-06 TCCCCAAGGTCA 12 SOX7_HMG_full_dimeric_17_2 SELEX + 234766559 234766575 1.0E-05 TGAGAATGTCAGTCTAA 17 Pax4_MA0068.1 JASPAR + 234766576 234766605 7.0E-06 GATAAATTATCGCAAACATCAGACCCCACC 30 HOXA1_homeodomain_DBD_monomeric_10_1 SELEX + 234766764 234766773 4.0E-06 AGTAATTAAG 10 HOXB5_homeodomain_DBD_monomeric_10_1 SELEX + 234766764 234766773 5.0E-06 AGTAATTAAG 10 RARG_nuclearreceptor_full_dimeric_18_1 SELEX + 234766704 234766721 1.0E-06 GATGTCAGCCAAAGCTCA 18 REL_MA0101.1 JASPAR + 234766306 234766315 3.0E-06 TGGGATTTCC 10 Dlx2_homeodomain_DBD_monomeric_8_1 SELEX + 234766765 234766772 5.0E-06 GTAATTAA 8 SOX8_HMG_full_dimeric_13_1 SELEX + 234766560 234766572 1.0E-06 GAGAATGTCAGTC 13 BHLHE41_bHLH_full_dimeric_10_1 SELEX + 234760899 234760908 5.0E-06 GGCACGTGAC 10 RELA_MA0107.1 JASPAR + 234766306 234766315 7.0E-06 TGGGATTTCC 10 HOXB2_homeodomain_DBD_monomeric_10_1 SELEX + 234766764 234766773 5.0E-06 AGTAATTAAG 10 POU2F3_POU_DBD_dimeric_12_1 SELEX - 234763415 234763426 7.0E-06 ATGAATAAGCAC 12 Ascl2_bHLH_DBD_dimeric_10_1 SELEX - 234763091 234763100 9.0E-06 ACCAGCTGCT 10 Bhlhb2_bHLH_DBD_monomeric_10_1 SELEX + 234760899 234760908 8.0E-06 GGCACGTGAC 10 ELK1_ETS_full_dimeric_17_1 SELEX + 234763348 234763364 5.0E-06 AATGTCCGGCGGAAGGG 17 ELK1_ETS_full_dimeric_17_1 SELEX - 234763348 234763364 2.0E-06 CCCTTCCGCCGGACATT 17 MEOX2_homeodomain_DBD_monomeric_10_1 SELEX + 234766764 234766773 1.0E-06 AGTAATTAAG 10 Mafb_bZIP_DBD_dimeric_17_1 SELEX - 234763414 234763430 1.0E-05 GCTGATGAATAAGCACA 17 MAFK_bZIP_full_dimeric_15_1 SELEX + 234763415 234763429 4.0E-06 GTGCTTATTCATCAG 15 VAX1_homeodomain_DBD_monomeric_8_1 SELEX - 234766765 234766772 9.0E-06 TTAATTAC 8 CTCF_C2H2_full_monomeric_17_1 SELEX + 234766285 234766301 1.0E-06 AGTGCCCTCTACTGGCC 17 Klf12_C2H2_DBD_monomeric_15_1 SELEX + 234763337 234763351 1.0E-05 AGCCACGCCCCAATG 15 Hoxd3_homeodomain_DBD_monomeric_10_1 SELEX + 234766764 234766773 2.0E-06 AGTAATTAAG 10 HOXB3_homeodomain_DBD_monomeric_10_1 SELEX + 234766764 234766773 4.0E-06 AGTAATTAAG 10 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX - 234766756 234766772 3.0E-06 TTAATTACTTCAGTTAG 17 TFAP4_bHLH_full_dimeric_10_1 SELEX - 234763406 234763415 9.0E-06 CACAGCTGTT 10 Pou5f1_MA0142.1 JASPAR + 234766440 234766454 1.0E-05 AGTTGTCATGTAAAT 15 HOXA13_homeodomain_full_monomeric_11_1 SELEX + 234766379 234766389 8.0E-06 TCTTATAAAAT 11 VAX2_homeodomain_DBD_monomeric_8_1 SELEX - 234766765 234766772 5.0E-06 TTAATTAC 8 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX + 234766380 234766389 1.0E-05 CTTATAAAAT 10 FOXO3_forkhead_full_dimeric_14_1 SELEX + 234766449 234766462 3.0E-06 GTAAATATGTTTCT 14 FOXO3_forkhead_full_dimeric_14_1 SELEX - 234766449 234766462 1.0E-06 AGAAACATATTTAC 14 RUNX1_MA0002.2 JASPAR + 234766492 234766502 8.0E-06 GTCTGTGGTTG 11 FOXB1_forkhead_full_monomeric_9_1 SELEX + 234766448 234766456 5.0E-06 TGTAAATAT 9 MNX1_homeodomain_DBD_monomeric_10_1 SELEX + 234766764 234766773 7.0E-06 AGTAATTAAG 10 FOXO6_forkhead_DBD_dimeric_14_1 SELEX - 234766449 234766462 1.0E-06 AGAAACATATTTAC 14 MSC_bHLH_full_dimeric_10_1 SELEX + 234763406 234763415 9.0E-06 AACAGCTGTG 10 ARNTL_bHLH_DBD_dimeric_10_1 SELEX + 234760899 234760908 4.0E-06 GGCACGTGAC 10 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 234766446 234766456 3.0E-06 CATGTAAATAT 11 BHLHB3_bHLH_full_dimeric_10_1 SELEX + 234760899 234760908 6.0E-06 GGCACGTGAC 10 Irx3_homeodomain_DBD_dimeric_12_1 SELEX - 234766441 234766452 3.0E-06 TTACATGACAAC 12 FOXO1_forkhead_DBD_dimeric_14_1 SELEX + 234766449 234766462 1.0E-06 GTAAATATGTTTCT 14 FOXO1_forkhead_DBD_dimeric_14_1 SELEX - 234766449 234766462 1.0E-06 AGAAACATATTTAC 14 Meox2_homeodomain_DBD_monomeric_8_1 SELEX - 234766765 234766772 9.0E-06 TTAATTAC 8 IRX5_homeodomain_DBD_dimeric_12_1 SELEX - 234766441 234766452 1.0E-06 TTACATGACAAC 12 V_NFKAPPAB65_01_M00052 TRANSFAC + 234766306 234766315 4.0E-06 TGGGATTTCC 10 V_E2A_Q6_01_M02088 TRANSFAC - 234763089 234763101 6.0E-06 GACCAGCTGCTGC 13 V_TST1_02_M01316 TRANSFAC + 234766759 234766775 9.0E-06 ACTGAAGTAATTAAGGA 17 V_MSX3_01_M01341 TRANSFAC + 234766760 234766775 5.0E-06 CTGAAGTAATTAAGGA 16 V_DEC2_Q2_M01843 TRANSFAC - 234760900 234760909 9.0E-06 GGTCACGTGC 10 V_XFD1_01_M00267 TRANSFAC + 234766446 234766459 1.0E-06 CATGTAAATATGTT 14 V_ARNT_02_M00539 TRANSFAC + 234760894 234760913 2.0E-06 GGGCTGGCACGTGACCTTGG 20 V_ARNT_02_M00539 TRANSFAC - 234760894 234760913 2.0E-06 CCAAGGTCACGTGCCAGCCC 20 V_HMGIY_Q3_M01010 TRANSFAC + 234760850 234760864 1.0E-05 TTTGGTATTTTCTGT 15 V_ETS_B_M00340 TRANSFAC - 234762570 234762583 4.0E-06 GACAGGAAGCCCCT 14 V_POU5F1_02_M02245 TRANSFAC + 234766440 234766454 1.0E-05 AGTTGTCATGTAAAT 15 V_EOMES_03_M02747 TRANSFAC + 234766466 234766482 1.0E-05 GGAAAGGTGTGGAAATG 17 V_ZTA_Q2_M00711 TRANSFAC - 234766549 234766561 2.0E-06 TCACCGTTACACA 13 V_NFAT3_Q3_M01734 TRANSFAC - 234763662 234763671 6.0E-06 ATTTTTTCCT 10 V_AP4_Q6_M00176 TRANSFAC - 234763406 234763415 8.0E-06 CACAGCTGTT 10 V_FOXO3A_Q1_M01137 TRANSFAC + 234766448 234766459 7.0E-06 TGTAAATATGTT 12 V_ARNT_01_M00236 TRANSFAC - 234760896 234760911 7.0E-06 AAGGTCACGTGCCAGC 16 V_HOXC4_01_M01369 TRANSFAC + 234766761 234766777 9.0E-06 TGAAGTAATTAAGGATG 17 V_MAF_Q6_M00648 TRANSFAC + 234764191 234764206 8.0E-06 AGGAGGGCAGTTGGCA 16 V_HFH4_01_M00742 TRANSFAC + 234766623 234766635 1.0E-05 AAGGGTTTGCTTT 13 V_HOXC6_01_M01406 TRANSFAC + 234766761 234766777 1.0E-06 TGAAGTAATTAAGGATG 17 V_VAX2_01_M01327 TRANSFAC + 234766760 234766775 7.0E-06 CTGAAGTAATTAAGGA 16 V_PU1_Q4_M01172 TRANSFAC - 234760807 234760825 1.0E-06 ATGTCTCTCTTCCTGTTTT 19 V_LHX3A_01_M00510 TRANSFAC + 234766763 234766772 2.0E-06 AAGTAATTAA 10 V_AP4_Q6_01_M00927 TRANSFAC - 234763092 234763100 6.0E-06 ACCAGCTGC 9 V_TCFAP2E_04_M02926 TRANSFAC + 234763659 234763672 3.0E-06 AGAAGGAAAAAATA 14 V_PAX6_02_M01391 TRANSFAC - 234766760 234766775 6.0E-06 TCCTTAATTACTTCAG 16 V_DLX5_01_M01388 TRANSFAC + 234766762 234766777 4.0E-06 GAAGTAATTAAGGATG 16 V_HOXC13_01_M01317 TRANSFAC + 234766376 234766391 9.0E-06 TGCTCTTATAAAATGT 16 V_HOXC13_01_M01317 TRANSFAC + 234766714 234766729 8.0E-06 AAAGCTCACAAAATGT 16 V_HBP1_Q2_M01661 TRANSFAC - 234766735 234766743 3.0E-06 TTCAATCAA 9 V_CEBPB_01_M00109 TRANSFAC + 234766470 234766483 9.0E-06 AGGTGTGGAAATGT 14 V_OCT2_02_M01761 TRANSFAC - 234762078 234762087 8.0E-06 TGAATACTCA 10 V_NKX62_Q2_M00489 TRANSFAC + 234766762 234766773 8.0E-06 GAAGTAATTAAG 12 V_TAL1_GATA1_01_M02243 TRANSFAC + 234763473 234763490 2.0E-06 CTGTGCACCGGAGATAAG 18 V_ELF4_04_M02850 TRANSFAC + 234766377 234766393 9.0E-06 GCTCTTATAAAATGTGC 17 V_HELIOSA_02_M01004 TRANSFAC + 234763659 234763669 6.0E-06 AGAAGGAAAAA 11 V_HOXA6_01_M01392 TRANSFAC - 234766760 234766775 7.0E-06 TCCTTAATTACTTCAG 16 V_EN1_02_M01365 TRANSFAC + 234766760 234766775 2.0E-06 CTGAAGTAATTAAGGA 16 V_DBX2_01_M01360 TRANSFAC + 234766760 234766775 1.0E-05 CTGAAGTAATTAAGGA 16 V_CEBPE_Q6_M01868 TRANSFAC - 234766472 234766485 7.0E-06 TAACATTTCCACAC 14 V_TBX18_01_M01262 TRANSFAC + 234766470 234766488 1.0E-06 AGGTGTGGAAATGTTACCA 19 V_TBX18_01_M01262 TRANSFAC + 234766669 234766687 8.0E-06 GGCTGTGAAATAGGCAACA 19 V_RUNX1_01_M02257 TRANSFAC + 234766492 234766502 8.0E-06 GTCTGTGGTTG 11 V_HOXA3_02_M01337 TRANSFAC + 234766760 234766773 9.0E-06 CTGAAGTAATTAAG 14 V_CREL_01_M00053 TRANSFAC + 234766306 234766315 3.0E-06 TGGGATTTCC 10 V_HOXA1_01_M01487 TRANSFAC + 234766760 234766775 3.0E-06 CTGAAGTAATTAAGGA 16 V_HNF3A_01_M01261 TRANSFAC + 234766447 234766456 7.0E-06 ATGTAAATAT 10 V_MAZ_Q6_01_M02023 TRANSFAC + 234762561 234762574 6.0E-06 GGAGGAGGAAGGGG 14 Tal1_Gata1_MA0140.1 JASPAR + 234763473 234763490 2.0E-06 CTGTGCACCGGAGATAAG 18 V_HBP1_03_M02762 TRANSFAC + 234766732 234766747 6.0E-06 TGTTTGATTGAATGAG 16 V_AP4_Q5_M00175 TRANSFAC - 234763406 234763415 8.0E-06 CACAGCTGTT 10 V_ERR1_Q3_M01841 TRANSFAC + 234760902 234760916 0.0E+00 ACGTGACCTTGGGGA 15 V_HMX1_02_M01481 TRANSFAC + 234766761 234766777 7.0E-06 TGAAGTAATTAAGGATG 17 V_SPIB_01_M01204 TRANSFAC + 234760806 234760822 3.0E-06 CAAAACAGGAAGAGAGA 17 V_KLF7_03_M02773 TRANSFAC + 234763335 234763350 8.0E-06 CCAGCCACGCCCCAAT 16 V_CTCF_02_M01259 TRANSFAC - 234766286 234766305 0.0E+00 GCCCGGCCAGTAGAGGGCAC 20 V_CTCF_02_M01259 TRANSFAC + 234766692 234766711 1.0E-05 GACTTTCCACGAGATGTCAG 20 V_LHX3b_01_M01971 TRANSFAC + 234766763 234766772 2.0E-06 AAGTAATTAA 10 V_CTCF_01_M01200 TRANSFAC - 234766284 234766303 0.0E+00 CCGGCCAGTAGAGGGCACTG 20 V_TBX5_01_M01019 TRANSFAC + 234766468 234766479 5.0E-06 AAAGGTGTGGAA 12 V_PAX8_B_M00328 TRANSFAC + 234763501 234763518 1.0E-05 AGATTTCTGCGTGACTTG 18 V_ELK1_01_M00007 TRANSFAC - 234762570 234762585 4.0E-06 CTGACAGGAAGCCCCT 16 V_SF1_Q6_01_M01132 TRANSFAC + 234760905 234760913 7.0E-06 TGACCTTGG 9 V_ELF1_Q6_M00746 TRANSFAC + 234760807 234760818 4.0E-06 AAAACAGGAAGA 12 V_HOXB7_01_M01396 TRANSFAC - 234766760 234766775 4.0E-06 TCCTTAATTACTTCAG 16 V_HOXB7_01_M01396 TRANSFAC + 234766762 234766777 1.0E-06 GAAGTAATTAAGGATG 16 V_CIZ_01_M00734 TRANSFAC + 234763664 234763672 3.0E-06 GAAAAAATA 9 V_LBP9_01_M01592 TRANSFAC + 234760835 234760851 8.0E-06 CTAGAAGGAACTGGATT 17 V_NFYC_Q5_M02107 TRANSFAC - 234763272 234763285 6.0E-06 GGCCCAATCAGTGC 14 V_STRA13_01_M00985 TRANSFAC + 234760897 234760910 3.0E-06 CTGGCACGTGACCT 14 V_FOXL1_02_M02857 TRANSFAC - 234766727 234766742 7.0E-06 TCAATCAAACAACACA 16 V_FOXJ3_06_M02855 TRANSFAC + 234760866 234760882 3.0E-06 AGGACCCAAACAAAGTG 17 V_CPHX_01_M01478 TRANSFAC - 234766734 234766747 8.0E-06 CTCATTCAATCAAA 14 V_PARP_Q3_M01211 TRANSFAC + 234766342 234766351 2.0E-06 TAGGAAATAG 10 V_ERR2_01_M01589 TRANSFAC - 234760902 234760913 3.0E-06 CCAAGGTCACGT 12 V_NKX61_02_M01469 TRANSFAC - 234766762 234766777 9.0E-06 CATCCTTAATTACTTC 16 V_TFIIA_Q6_M00707 TRANSFAC + 234760860 234760871 2.0E-06 TCTGTAAGGACC 12 V_BARX2_01_M01431 TRANSFAC + 234766762 234766777 2.0E-06 GAAGTAATTAAGGATG 16 V_PLZF_02_M01075 TRANSFAC + 234766438 234766466 0.0E+00 GGAGTTGTCATGTAAATATGTTTCTGTTG 29 V_ESRRA_03_M02748 TRANSFAC - 234760900 234760916 5.0E-06 TCCCCAAGGTCACGTGC 17 V_HOXC5_01_M01454 TRANSFAC + 234766761 234766777 9.0E-06 TGAAGTAATTAAGGATG 17 V_RARA_03_M02787 TRANSFAC - 234760901 234760916 7.0E-06 TCCCCAAGGTCACGTG 16 V_HB9_01_M01349 TRANSFAC + 234766762 234766777 5.0E-06 GAAGTAATTAAGGATG 16 V_VAX1_01_M01397 TRANSFAC - 234766760 234766775 4.0E-06 TCCTTAATTACTTCAG 16 V_EWSR1FLI1_01_M02252 TRANSFAC - 234763223 234763240 1.0E-06 GAGAGGAAGGCAGGGAGG 18 V_ERR1_Q2_01_M02093 TRANSFAC - 234760902 234760912 2.0E-06 CAAGGTCACGT 11 V_FOXO1_04_M01969 TRANSFAC - 234766449 234766468 1.0E-06 TCCAACAGAAACATATTTAC 20 V_HOXD8_01_M01432 TRANSFAC + 234766762 234766778 9.0E-06 GAAGTAATTAAGGATGC 17 V_PLAGL1_03_M02786 TRANSFAC + 234762656 234762671 3.0E-06 CCTGGGGCGCCCCAAA 16 V_PLAGL1_03_M02786 TRANSFAC - 234762656 234762671 1.0E-06 TTTGGGGCGCCCCAGG 16 V_MOX1_01_M01443 TRANSFAC - 234766760 234766775 7.0E-06 TCCTTAATTACTTCAG 16 V_HOXA7_03_M01394 TRANSFAC + 234766762 234766777 2.0E-06 GAAGTAATTAAGGATG 16 V_HOXD3_01_M01338 TRANSFAC + 234766760 234766775 6.0E-06 CTGAAGTAATTAAGGA 16 V_DLX1_01_M01439 TRANSFAC + 234766760 234766773 0.0E+00 CTGAAGTAATTAAG 14 V_PBX1_Q3_M02028 TRANSFAC - 234766735 234766743 6.0E-06 TTCAATCAA 9 V_BRCA_01_M01082 TRANSFAC + 234766459 234766466 1.0E-05 TTCTGTTG 8 V_BRCA_01_M01082 TRANSFAC + 234766637 234766644 1.0E-05 TTCTGTTG 8 V_OCT4_01_M01125 TRANSFAC + 234766440 234766454 2.0E-06 AGTTGTCATGTAAAT 15 V_HSF1_Q6_01_M02017 TRANSFAC + 234760854 234760867 9.0E-06 GTATTTTCTGTAAG 14 V_HOXC8_01_M01321 TRANSFAC + 234766760 234766775 3.0E-06 CTGAAGTAATTAAGGA 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.