Search TFs
or Genes
Construction
and Validation
Optimal
Promoter Size
Download Citation and
Contact

MNS1


EntrezDescriptionChrom.StrandPromoter
(Start - Stop)
TSS
55329 meiosis-specific nuclear structural 1 chr15 -56756835 - 56762335 56757335

Transcription Factor Binding Sites

 
Download all TFBS in the MNS1 promoter
 
MotifSourceStrandStartStop PValueMatch
Sequence
Overlap w/
Footprints
FOXJ2_forkhead_DBD_monomeric_8_1 SELEX + 56757132 56757139 5.0E-06 ATAAACAA 8
SOX10_HMG_full_dimeric_15_3 SELEX + 56760015 56760029 6.0E-06 ATGAATTATACTGAT 15
IRF7_IRF_DBD_dimeric_14_1 SELEX - 56760915 56760928 2.0E-06 GCAAAAGTGAAAGT 14
FOXF2_MA0030.1 JASPAR + 56757127 56757140 4.0E-06 CAACAATAAACAAG 14
FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 56757122 56757138 1.0E-06 TAAATCAACAATAAACA 17
FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 56757122 56757133 1.0E-06 TAAATCAACAAT 12
LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 56760017 56760031 5.0E-06 GAATTATACTGATTA 15
FOXL1_forkhead_full_dimeric_13_1 SELEX + 56757127 56757139 9.0E-06 CAACAATAAACAA 13
SOX9_HMG_full_dimeric_17_3 SELEX + 56760014 56760030 3.0E-06 GATGAATTATACTGATT 17
FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 56757122 56757132 8.0E-06 TAAATCAACAA 11
SOX8_HMG_full_dimeric_17_1 SELEX + 56760014 56760030 1.0E-05 GATGAATTATACTGATT 17
EWSR1-FLI1_MA0149.1 JASPAR - 56756758 56756775 7.0E-06 GGAATGAGGGGAGGAGAA 18
ZNF232_C2H2_full_monomeric_19_1 SELEX - 56757121 56757139 8.0E-06 TTGTTTATTGTTGATTTAA 19
SOX7_HMG_full_dimeric_17_2 SELEX + 56760014 56760030 8.0E-06 GATGAATTATACTGATT 17
ISL2_homeodomain_DBD_monomeric_8_1 SELEX + 56757076 56757083 1.0E-05 GCACTTAA 8
SOX15_HMG_full_dimeric_15_3 SELEX - 56760015 56760029 9.0E-06 ATCAGTATAATTCAT 15
MSX1_homeodomain_full_monomeric_8_1 SELEX + 56757056 56757063 7.0E-06 CCAATTAA 8
NKX3-2_homeodomain_DBD_monomeric_9_1 SELEX + 56757075 56757083 7.0E-06 AGCACTTAA 9
SPIB_ETS_DBD_monomeric_14_1 SELEX + 56752538 56752551 1.0E-06 GAAAAGCAGAAGTT 14
SPIB_ETS_DBD_monomeric_14_1 SELEX + 56761791 56761804 9.0E-06 AAAAAGAGGAACAC 14
TEAD1_TEA_full_monomeric_10_1 SELEX + 56752586 56752595 7.0E-06 CACATTCCTC 10
MSX2_homeodomain_DBD_monomeric_8_1 SELEX + 56757056 56757063 7.0E-06 CCAATTAA 8
IRF1_MA0050.1 JASPAR - 56760915 56760926 1.0E-06 AAAAGTGAAAGT 12
HMX3_homeodomain_DBD_monomeric_11_1 SELEX + 56757075 56757085 3.0E-06 AGCACTTAAAA 11
POU6F2_POU_DBD_dimeric_16_1 SELEX + 56757060 56757075 1.0E-06 TTAATGACCAGATTAA 16
POU6F2_POU_DBD_dimeric_16_1 SELEX - 56757060 56757075 1.0E-06 TTAATCTGGTCATTAA 16
RUNX2_RUNX_DBD_dimeric_18_1 SELEX - 56757521 56757538 3.0E-06 AACCCACTGAAACCACAG 18
Foxq1_MA0040.1 JASPAR - 56757131 56757141 6.0E-06 ACTTGTTTATT 11
Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 56757128 56757138 6.0E-06 AACAATAAACA 11
FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 56757125 56757138 0.0E+00 ATCAACAATAAACA 14
HNF1A_homeodomain_full_dimeric_15_1 SELEX - 56752522 56752536 6.0E-06 AATTACAGATTAAAT 15
NFAT5_NFAT_DBD_dimeric_14_1 SELEX - 56757612 56757625 1.0E-06 GTGGAAATTTCCTT 14
FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 56757128 56757138 6.0E-06 AACAATAAACA 11
PRDM4_C2H2_full_monomeric_13_1 SELEX + 56757144 56757156 0.0E+00 TTTCAAGTCCCCC 13
BSX_homeodomain_DBD_monomeric_8_1 SELEX + 56757056 56757063 7.0E-06 CCAATTAA 8
NKX2-3_homeodomain_full_monomeric_10_1 SELEX + 56757075 56757084 4.0E-06 AGCACTTAAA 10
SMAD3_MAD_DBD_dimeric_10_1 SELEX + 56759957 56759966 6.0E-06 AGTCTAGACT 10
SMAD3_MAD_DBD_dimeric_10_1 SELEX - 56759957 56759966 6.0E-06 AGTCTAGACT 10
Foxd3_MA0041.1 JASPAR - 56757123 56757134 3.0E-06 TATTGTTGATTT 12
IRF9_IRF_full_trimeric_15_1 SELEX - 56760915 56760929 2.0E-06 AGCAAAAGTGAAAGT 15
PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 56760913 56760927 0.0E+00 CAAAAGTGAAAGTGA 15
Msx3_homeodomain_DBD_monomeric_8_1 SELEX + 56757056 56757063 7.0E-06 CCAATTAA 8
ERF_ETS_DBD_monomeric_10_1 SELEX + 56761886 56761895 1.0E-05 ACAGGAAGTA 10
MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 56760016 56760032 5.0E-06 TGAATTATACTGATTAA 17
Sox3_HMG_DBD_dimeric_17_3 SELEX + 56760014 56760030 4.0E-06 GATGAATTATACTGATT 17
HMX2_homeodomain_DBD_monomeric_11_1 SELEX + 56757075 56757085 2.0E-06 AGCACTTAAAA 11
TEAD4_TEA_DBD_monomeric_10_1 SELEX + 56752586 56752595 9.0E-06 CACATTCCTC 10
SPI1_ETS_full_monomeric_14_1 SELEX + 56752538 56752551 1.0E-06 GAAAAGCAGAAGTT 14
SPI1_ETS_full_monomeric_14_1 SELEX + 56757439 56757452 7.0E-06 AAAAGCGGGAAGTT 14
SPI1_ETS_full_monomeric_14_1 SELEX + 56761791 56761804 8.0E-06 AAAAAGAGGAACAC 14
IRF3_IRF_full_trimeric_21_1 SELEX - 56760914 56760934 7.0E-06 GCAAGAGCAAAAGTGAAAGTG 21
Foxj3_forkhead_DBD_monomeric_8_1 SELEX + 56757132 56757139 5.0E-06 ATAAACAA 8
HNF1B_homeodomain_full_dimeric_15_1 SELEX - 56752522 56752536 1.0E-05 AATTACAGATTAAAT 15
ELF5_MA0136.1 JASPAR - 56757612 56757620 5.0E-06 AATTTCCTT 9
FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 56757119 56757131 5.0E-06 AATTAAATCAACA 13
NFIA_NFI_full_monomeric_10_1 SELEX + 56756978 56756987 5.0E-06 AGTGCCAAAA 10
TP63_p53l_DBD_dimeric_18_1 SELEX + 56757135 56757152 6.0E-06 AACAAGTAGTTTCAAGTC 18
TEAD1_MA0090.1 JASPAR + 56752586 56752597 2.0E-06 CACATTCCTCTC 12
IRF2_MA0051.1 JASPAR - 56760910 56760927 1.0E-06 CAAAAGTGAAAGTGAGAG 18
HMX1_homeodomain_DBD_monomeric_11_1 SELEX + 56757075 56757085 3.0E-06 AGCACTTAAAA 11
RUNX3_RUNX_DBD_dimeric_18_1 SELEX - 56757521 56757538 1.0E-06 AACCCACTGAAACCACAG 18
FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 56757125 56757138 0.0E+00 ATCAACAATAAACA 14
V_NFAT_Q4_01_M00935 TRANSFAC - 56757616 56757625 3.0E-06 GTGGAAATTT 10
V_CEBPG_Q6_M00622 TRANSFAC - 56760082 56760094 8.0E-06 TTTATTTCAGATC 13
V_HNF3B_01_M00131 TRANSFAC - 56757122 56757136 1.0E-06 TTTATTGTTGATTTA 15
V_SPI1_01_M01203 TRANSFAC - 56757046 56757062 7.0E-06 TAATTGGGGAACTTGTA 17
V_SPI1_01_M01203 TRANSFAC + 56757439 56757455 2.0E-06 AAAAGCGGGAAGTTCAG 17
V_DBX1_01_M01483 TRANSFAC + 56757119 56757135 3.0E-06 AATTAAATCAACAATAA 17
V_FREAC7_01_M00293 TRANSFAC + 56757120 56757135 8.0E-06 ATTAAATCAACAATAA 16
V_NFKB_Q6_01_M00774 TRANSFAC - 56757613 56757628 9.0E-06 TGCGTGGAAATTTCCT 16
V_OBOX5_05_M03066 TRANSFAC - 56752519 56752535 6.0E-06 ATTACAGATTAAATCTT 17
V_GATA1_Q6_M02004 TRANSFAC + 56761823 56761837 7.0E-06 ACAGCAGATAAAGAA 15
V_ZFP410_04_M02936 TRANSFAC + 56756757 56756773 0.0E+00 TTTCTCCTCCCCTCATT 17
V_SOX30_03_M02804 TRANSFAC + 56757124 56757139 5.0E-06 AATCAACAATAAACAA 16
V_FOXD3_01_M00130 TRANSFAC - 56757123 56757134 3.0E-06 TATTGTTGATTT 12
V_NKX29_01_M01352 TRANSFAC - 56757069 56757085 0.0E+00 TTTTAAGTGCTTAATCT 17
V_NKX29_01_M01352 TRANSFAC + 56757070 56757086 0.0E+00 GATTAAGCACTTAAAAT 17
V_SPIB_02_M02041 TRANSFAC + 56761886 56761895 3.0E-06 ACAGGAAGTA 10
V_ISL2_01_M01328 TRANSFAC + 56757071 56757086 9.0E-06 ATTAAGCACTTAAAAT 16
V_IRF_Q6_01_M00972 TRANSFAC - 56760916 56760926 0.0E+00 AAAAGTGAAAG 11
V_IRF2_Q6_M01882 TRANSFAC - 56760913 56760928 0.0E+00 GCAAAAGTGAAAGTGA 16
V_NFAT3_Q3_M01734 TRANSFAC + 56756840 56756849 3.0E-06 AGATTTTCCT 10
V_CEBP_01_M00159 TRANSFAC + 56752532 56752544 7.0E-06 TAATTGGAAAAGC 13
V_FOXO3A_Q1_M01137 TRANSFAC + 56757131 56757142 1.0E-06 AATAAACAAGTA 12
V_HNF3_Q6_01_M01012 TRANSFAC - 56757119 56757136 0.0E+00 TTTATTGTTGATTTAATT 18
V_FOXJ1_03_M02750 TRANSFAC + 56757129 56757144 4.0E-06 ACAATAAACAAGTAGT 16
V_NKX24_01_M01350 TRANSFAC + 56757072 56757087 1.0E-06 TTAAGCACTTAAAATC 16
V_CMYB_Q5_M01821 TRANSFAC + 56757154 56757164 1.0E-06 CCCAACTGGCT 11
V_FOXP3_01_M01599 TRANSFAC + 56757132 56757139 5.0E-06 ATAAACAA 8
V_NKX62_Q2_M00489 TRANSFAC - 56756955 56756966 7.0E-06 GTATTAAATACA 12
V_CETS1P54_02_M00074 TRANSFAC + 56761884 56761896 6.0E-06 GCACAGGAAGTAA 13
V_NRSE_B_M00325 TRANSFAC + 56757240 56757260 3.0E-06 AGCAGCCCCAAGGAGCGCACC 21
V_LHX61_01_M01314 TRANSFAC - 56760021 56760037 1.0E-06 GGACATTAATCAGTATA 17
V_SPIC_01_M02042 TRANSFAC + 56761886 56761895 4.0E-06 ACAGGAAGTA 10
V_SOX7_03_M02807 TRANSFAC + 56757121 56757142 4.0E-06 TTAAATCAACAATAAACAAGTA 22
V_OBOX5_02_M01480 TRANSFAC - 56752519 56752535 6.0E-06 ATTACAGATTAAATCTT 17
V_HELIOSA_02_M01004 TRANSFAC - 56759996 56760006 4.0E-06 ATAAGGAAAAG 11
V_ZFP105_03_M02827 TRANSFAC + 56757121 56757135 1.0E-06 TTAAATCAACAATAA 15
V_ZFP105_03_M02827 TRANSFAC + 56757128 56757142 0.0E+00 AACAATAAACAAGTA 15
V_FLI1_02_M02073 TRANSFAC + 56761886 56761895 9.0E-06 ACAGGAAGTA 10
V_GATA3_05_M02859 TRANSFAC + 56752514 56752535 5.0E-06 TAAGGAAGATTTAATCTGTAAT 22
V_SOX8_04_M02912 TRANSFAC - 56756847 56756860 8.0E-06 ACATTTATGTTAGG 14
V_NKX31_02_M02782 TRANSFAC + 56757071 56757087 2.0E-06 ATTAAGCACTTAAAATC 17
V_NKX26_01_M01322 TRANSFAC + 56757072 56757087 1.0E-06 TTAAGCACTTAAAATC 16
V_IRF2_01_M00063 TRANSFAC - 56760915 56760927 0.0E+00 CAAAAGTGAAAGT 13
V_AMEF2_Q6_M00403 TRANSFAC + 56757176 56757193 7.0E-06 CTGACGAAAAATACCCCC 18
V_NFKB_Q6_M00194 TRANSFAC - 56757612 56757625 6.0E-06 GTGGAAATTTCCTT 14
V_IRF3_Q3_M01279 TRANSFAC + 56760913 56760925 1.0E-06 TCACTTTCACTTT 13
V_RXRA_04_M02895 TRANSFAC - 56756960 56756975 5.0E-06 TCGCATAGTGTATTAA 16
V_IRF_Q6_M00772 TRANSFAC + 56760912 56760926 0.0E+00 CTCACTTTCACTTTT 15
V_LEF1_03_M02878 TRANSFAC - 56760022 56760037 8.0E-06 GGACATTAATCAGTAT 16
V_HNF1_Q6_01_M01011 TRANSFAC - 56752519 56752539 8.0E-06 TCCAATTACAGATTAAATCTT 21
V_HNF1_Q6_01_M01011 TRANSFAC + 56757121 56757141 2.0E-06 TTAAATCAACAATAAACAAGT 21
V_NKX22_02_M01372 TRANSFAC + 56757072 56757088 2.0E-06 TTAAGCACTTAAAATCC 17
V_SOX18_03_M02801 TRANSFAC - 56757122 56757137 9.0E-06 GTTTATTGTTGATTTA 16
V_ISRE_01_M00258 TRANSFAC + 56760914 56760928 5.0E-06 CACTTTCACTTTTGC 15
V_SOX12_04_M02900 TRANSFAC + 56761824 56761839 8.0E-06 CAGCAGATAAAGAATG 16
V_SPIB_01_M01204 TRANSFAC + 56761791 56761807 3.0E-06 AAAAAGAGGAACACAGC 17
V_TEF_01_M01305 TRANSFAC + 56752586 56752597 2.0E-06 CACATTCCTCTC 12
V_XFD2_01_M00268 TRANSFAC + 56757129 56757142 2.0E-06 ACAATAAACAAGTA 14
V_NCX_02_M01420 TRANSFAC - 56756954 56756970 8.0E-06 TAGTGTATTAAATACAT 17
V_CETS1P54_01_M00032 TRANSFAC + 56761886 56761895 1.0E-06 ACAGGAAGTA 10
V_ISGF3G_03_M02771 TRANSFAC - 56760913 56760927 9.0E-06 CAAAAGTGAAAGTGA 15
V_SRF_03_M01304 TRANSFAC - 56757086 56757098 8.0E-06 TTCTAAAAAAGGA 13
V_BLIMP1_Q6_M01066 TRANSFAC - 56760913 56760928 0.0E+00 GCAAAAGTGAAAGTGA 16
V_NKX23_01_M01457 TRANSFAC + 56757070 56757085 2.0E-06 GATTAAGCACTTAAAA 16
V_NKX23_01_M01457 TRANSFAC - 56757070 56757085 0.0E+00 TTTTAAGTGCTTAATC 16
V_ICSBP_Q6_M00699 TRANSFAC - 56760914 56760925 0.0E+00 AAAGTGAAAGTG 12
V_NKX32_02_M01482 TRANSFAC + 56757071 56757087 0.0E+00 ATTAAGCACTTAAAATC 17
V_IRF7_01_M00453 TRANSFAC - 56760912 56760929 5.0E-06 AGCAAAAGTGAAAGTGAG 18
V_EN2_01_M01455 TRANSFAC + 56757052 56757068 9.0E-06 TTCCCCAATTAATGACC 17
V_FREAC2_01_M00290 TRANSFAC + 56757127 56757142 8.0E-06 CAACAATAAACAAGTA 16
V_SOX15_03_M02799 TRANSFAC + 56757123 56757139 5.0E-06 AAATCAACAATAAACAA 17
V_NKX25_03_M01414 TRANSFAC + 56757072 56757087 1.0E-06 TTAAGCACTTAAAATC 16
V_GABPBETA_Q3_M01876 TRANSFAC + 56761886 56761896 4.0E-06 ACAGGAAGTAA 11
V_E2F_Q6_01_M00920 TRANSFAC + 56757104 56757115 9.0E-06 TGAGCGCCAAAC 12
V_GATA1_04_M00128 TRANSFAC + 56761825 56761837 6.0E-06 AGCAGATAAAGAA 13
V_FOXL1_04_M02753 TRANSFAC + 56757120 56757136 5.0E-06 ATTAAATCAACAATAAA 17
V_LUN1_01_M00480 TRANSFAC - 56756980 56756996 6.0E-06 TTCCAGCTTTTTTGGCA 17
V_NKX3A_02_M01383 TRANSFAC - 56757069 56757085 1.0E-06 TTTTAAGTGCTTAATCT 17
V_NKX3A_02_M01383 TRANSFAC + 56757070 56757086 0.0E+00 GATTAAGCACTTAAAAT 17
V_NCX_01_M00484 TRANSFAC + 56752529 56752538 5.0E-06 CTGTAATTGG 10
V_TEF1_Q6_03_M01817 TRANSFAC - 56752587 56752595 3.0E-06 GAGGAATGT 9
V_TCF7_04_M02921 TRANSFAC - 56756954 56756968 9.0E-06 GTGTATTAAATACAT 15
V_TCF7L2_04_M02922 TRANSFAC - 56760022 56760037 3.0E-06 GGACATTAATCAGTAT 16
V_NKX22_01_M00485 TRANSFAC - 56757074 56757083 2.0E-06 TTAAGTGCTT 10
V_NKX22_01_M00485 TRANSFAC + 56757136 56757145 7.0E-06 ACAAGTAGTT 10
V_MSX1_01_M00394 TRANSFAC + 56752529 56752537 7.0E-06 CTGTAATTG 9
V_FOX_Q2_M00809 TRANSFAC - 56757122 56757134 0.0E+00 TATTGTTGATTTA 13
V_PLZF_02_M01075 TRANSFAC - 56757079 56757107 2.0E-06 CTCATCTGCTTCTAAAAAAGGATTTTAAG 29
V_ETS1_B_M00339 TRANSFAC + 56761886 56761900 4.0E-06 ACAGGAAGTAAGGCA 15
V_SOX21_04_M02907 TRANSFAC - 56757122 56757138 2.0E-06 TGTTTATTGTTGATTTA 17
V_IRF1_Q6_01_M01881 TRANSFAC + 56760914 56760927 0.0E+00 CACTTTCACTTTTG 14
V_SOX8_03_M02808 TRANSFAC - 56757123 56757139 2.0E-06 TTGTTTATTGTTGATTT 17
V_CETS1_02_M02063 TRANSFAC + 56761886 56761895 9.0E-06 ACAGGAAGTA 10
V_EWSR1FLI1_01_M02252 TRANSFAC - 56756758 56756775 7.0E-06 GGAATGAGGGGAGGAGAA 18
V_FOXJ2_01_M00422 TRANSFAC + 56757126 56757143 5.0E-06 TCAACAATAAACAAGTAG 18
V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 56757522 56757529 1.0E-05 TGTGGTTT 8
V_HOMEZ_01_M01429 TRANSFAC + 56757080 56757096 6.0E-06 TTAAAATCCTTTTTTAG 17
V_FOXO1_01_M00473 TRANSFAC + 56757131 56757140 1.0E-06 AATAAACAAG 10
V_HNF3B_Q6_M02014 TRANSFAC - 56757131 56757139 6.0E-06 TTGTTTATT 9
V_IRF1_01_M00062 TRANSFAC - 56760915 56760927 0.0E+00 CAAAAGTGAAAGT 13
V_SOX12_03_M02796 TRANSFAC - 56757122 56757135 5.0E-06 TTATTGTTGATTTA 14
V_SRY_05_M02917 TRANSFAC + 56757122 56757138 1.0E-06 TAAATCAACAATAAACA 17
V_FOXO4_01_M00472 TRANSFAC + 56757132 56757142 1.0E-06 ATAAACAAGTA 11
V_HMEF2_Q6_M00406 TRANSFAC + 56757178 56757193 3.0E-06 GACGAAAAATACCCCC 16
V_ELF5_04_M02241 TRANSFAC - 56757612 56757620 5.0E-06 AATTTCCTT 9
V_IPF1_04_M01236 TRANSFAC - 56757056 56757065 2.0E-06 CATTAATTGG 10
V_IPF1_04_M01236 TRANSFAC - 56760025 56760034 4.0E-06 CATTAATCAG 10
V_OBOX5_01_M01381 TRANSFAC - 56752519 56752535 5.0E-06 ATTACAGATTAAATCTT 17
V_OTX1_01_M01366 TRANSFAC - 56752519 56752535 1.0E-05 ATTACAGATTAAATCTT 17
V_OBOX6_06_M03067 TRANSFAC + 56752519 56752535 5.0E-06 AAGATTTAATCTGTAAT 17
V_SPI1_02_M02043 TRANSFAC + 56761886 56761895 4.0E-06 ACAGGAAGTA 10
V_PAX6_01_M00097 TRANSFAC - 56757120 56757140 1.0E-05 CTTGTTTATTGTTGATTTAAT 21
V_NANOG_02_M01247 TRANSFAC + 56757121 56757140 5.0E-06 TTAAATCAACAATAAACAAG 20
V_HOXC9_01_M01416 TRANSFAC - 56757056 56757071 3.0E-06 TCTGGTCATTAATTGG 16
Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns.
Developed at the Institute for Systems Biology in the Baliga Lab.
A Django site.   Powered by PostgreSQL