Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PCMTD2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55251 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 chr20 + 62882047 - 62887547 62887047 Transcription Factor Binding Sites   Download all TFBS in the PCMTD2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 62889903 62889920 8.0E-06 AATGAAAATAATCACATA 18 TBX1_TBX_DBD_dimeric_20_2 SELEX - 62887013 62887032 3.0E-06 CTGGCACTTAAAGGGGTGAT 20 DLX1_homeodomain_DBD_monomeric_10_1 SELEX + 62890078 62890087 3.0E-06 CATAATTATA 10 THRA_nuclearreceptor_FL_dimeric_18_1 SELEX + 62889647 62889664 3.0E-06 TTGACCTCATTAGGACTT 18 THRA_nuclearreceptor_FL_dimeric_18_1 SELEX - 62889647 62889664 2.0E-06 AAGTCCTAATGAGGTCAA 18 SRY_HMG_DBD_dimeric_15_1 SELEX - 62889900 62889914 6.0E-06 AATAATCACATAGTT 15 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 62890057 62890073 4.0E-06 GAAAGCAAGTATAAACT 17 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 62889909 62889920 8.0E-06 AATGAAAATAAT 12 TBX5_TBX_DBD_dimeric_20_1 SELEX + 62888620 62888639 1.0E-06 AGGTGTCAGTTCTGAGACCT 20 TBX5_TBX_DBD_dimeric_20_1 SELEX - 62888620 62888639 2.0E-06 AGGTCTCAGAACTGACACCT 20 FOXL1_forkhead_full_dimeric_13_1 SELEX - 62889906 62889918 6.0E-06 TGAAAATAATCAC 13 FOXD1_MA0031.1 JASPAR - 62887103 62887110 7.0E-06 GTAAACAT 8 FOXC1_forkhead_DBD_monomeric_11_1 SELEX - 62889910 62889920 9.0E-06 AATGAAAATAA 11 EWSR1-FLI1_MA0149.1 JASPAR - 62887294 62887311 1.0E-06 GGGAAGGAGGAGGGAAGG 18 ISL2_homeodomain_DBD_monomeric_8_1 SELEX - 62887022 62887029 1.0E-05 GCACTTAA 8 Sox17_HMG_DBD_dimeric_15_1 SELEX - 62889900 62889914 6.0E-06 AATAATCACATAGTT 15 MEOX2_homeodomain_DBD_dimeric_14_1 SELEX + 62890073 62890086 0.0E+00 TTCATCATAATTAT 14 RORA_nuclearreceptor_DBD_dimeric_19_1 SELEX - 62889565 62889583 6.0E-06 AATTTGGGTCAGTGGTTAA 19 TEAD1_TEA_full_monomeric_10_1 SELEX - 62890042 62890051 7.0E-06 CACATTCCTC 10 THRB_nuclearreceptor_DBD_dimeric_18_1 SELEX + 62889647 62889664 2.0E-06 TTGACCTCATTAGGACTT 18 THRB_nuclearreceptor_DBD_dimeric_18_1 SELEX - 62889647 62889664 3.0E-06 AAGTCCTAATGAGGTCAA 18 SOX8_HMG_full_dimeric_13_1 SELEX - 62887683 62887695 2.0E-06 GTGAATTGAAGTC 13 OTX2_homeodomain_DBD_monomeric_8_1 SELEX - 62889637 62889644 7.0E-06 TTAATCCT 8 TBX4_TBX_DBD_dimeric_20_1 SELEX + 62888620 62888639 3.0E-06 AGGTGTCAGTTCTGAGACCT 20 TBX4_TBX_DBD_dimeric_20_1 SELEX - 62888620 62888639 5.0E-06 AGGTCTCAGAACTGACACCT 20 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 62889907 62889917 8.0E-06 GAAAATAATCA 11 SOX7_HMG_full_dimeric_17_1 SELEX - 62889899 62889915 1.0E-05 AAATAATCACATAGTTT 17 PITX1_homeodomain_full_monomeric_9_1 SELEX - 62889637 62889645 2.0E-06 TTTAATCCT 9 TFAP2C_TFAP_full_dimeric_12_1 SELEX + 62886751 62886762 7.0E-06 CGCCCGAGGGCA 12 TFAP4_bHLH_full_dimeric_10_1 SELEX + 62886644 62886653 7.0E-06 CACAGCTGAT 10 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX + 62887306 62887316 8.0E-06 CTTCCCCACCC 11 TEAD4_TEA_DBD_monomeric_10_1 SELEX - 62890042 62890051 9.0E-06 CACATTCCTC 10 REST_MA0138.2 JASPAR - 62886726 62886746 7.0E-06 CCCAGCACCAAGCACAGCCGC 21 IRF3_IRF_full_trimeric_21_1 SELEX - 62884254 62884274 1.0E-06 AGGGAACTGAAACTGCAAGAG 21 IRF3_IRF_full_trimeric_21_1 SELEX - 62884260 62884280 6.0E-06 CAGATGAGGGAACTGAAACTG 21 TFAP2A_TFAP_DBD_dimeric_12_1 SELEX - 62886751 62886762 8.0E-06 TGCCCTCGGGCG 12 Sox3_HMG_DBD_dimeric_17_1 SELEX - 62889899 62889915 4.0E-06 AAATAATCACATAGTTT 17 NRF1_NRF_full_dimeric_12_1 SELEX + 62887039 62887050 6.0E-06 GGCGCATGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 62887039 62887050 1.0E-06 TGCGCATGCGCC 12 NRF1_NRF_full_dimeric_12_1 SELEX + 62887063 62887074 5.0E-06 TGCGCAGGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 62887063 62887074 5.0E-06 TGCGCCTGCGCA 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 62889907 62889919 2.0E-06 ATGAAAATAATCA 13 Tcfap2a_TFAP_DBD_dimeric_12_1 SELEX - 62886751 62886762 9.0E-06 TGCCCTCGGGCG 12 RORA_2_MA0072.1 JASPAR - 62889572 62889585 1.0E-06 AAAATTTGGGTCAG 14 DLX5_homeodomain_FL_monomeric_8_1 SELEX + 62890079 62890086 4.0E-06 ATAATTAT 8 DLX5_homeodomain_FL_monomeric_8_1 SELEX - 62890079 62890086 4.0E-06 ATAATTAT 8 TEAD1_MA0090.1 JASPAR - 62890040 62890051 0.0E+00 CACATTCCTCTG 12 V_FOXP1_01_M00987 TRANSFAC + 62889951 62889970 5.0E-06 TTGTGTACGTGGGTGTGTAT 20 V_CEBPG_Q6_M00622 TRANSFAC + 62886649 62886661 1.0E-06 CTGATTTCACAAA 13 V_KLF15_Q2_M01714 TRANSFAC - 62887357 62887370 4.0E-06 GAGGTGGGGAGGAG 14 V_FOXP3_Q4_M00992 TRANSFAC - 62890061 62890077 9.0E-06 ATGAAGTTTATACTTGC 17 V_SRY_07_M02813 TRANSFAC - 62890072 62890087 9.0E-06 TATAATTATGATGAAG 16 V_SRY_07_M02813 TRANSFAC + 62890078 62890093 9.0E-06 CATAATTATAACAAGT 16 V_ALX4_01_M00619 TRANSFAC - 62889908 62889920 8.0E-06 AATGAAAATAATC 13 V_RORA_Q4_M01138 TRANSFAC - 62889573 62889583 9.0E-06 AATTTGGGTCA 11 V_OCT1_Q5_01_M00930 TRANSFAC + 62889910 62889920 1.0E-06 TTATTTTCATT 11 V_IRF_Q6_01_M00972 TRANSFAC - 62884262 62884272 8.0E-06 GGAACTGAAAC 11 V_IRF2_Q6_M01882 TRANSFAC - 62884259 62884274 8.0E-06 AGGGAACTGAAACTGC 16 V_SOX11_04_M02899 TRANSFAC - 62889717 62889730 5.0E-06 TGAATTGTTTCGGA 14 V_SOX11_04_M02899 TRANSFAC - 62890073 62890086 1.0E-05 ATAATTATGATGAA 14 V_SPZ1_01_M00446 TRANSFAC - 62887292 62887306 7.0E-06 GGAGGAGGGAAGGGG 15 V_HFH4_01_M00742 TRANSFAC + 62889904 62889916 1.0E-05 ATGTGATTATTTT 13 V_OCT_C_M00210 TRANSFAC + 62889909 62889921 4.0E-06 ATTATTTTCATTC 13 V_SOX21_03_M02803 TRANSFAC - 62890072 62890087 9.0E-06 TATAATTATGATGAAG 16 V_ZFP691_03_M02833 TRANSFAC - 62886891 62886907 1.0E-05 CGCGCAGTGCTCAGCCA 17 V_NKX62_Q2_M00489 TRANSFAC - 62890078 62890089 7.0E-06 GTTATAATTATG 12 V_TCFAP2C_04_M02925 TRANSFAC + 62886750 62886763 1.0E-06 CCGCCCGAGGGCAG 14 V_HELIOSA_02_M01004 TRANSFAC - 62889519 62889529 5.0E-06 TTTAGGAAAAG 11 V_OCT1_03_M00137 TRANSFAC + 62890076 62890088 2.0E-06 ATCATAATTATAA 13 V_OCT1_03_M00137 TRANSFAC - 62890077 62890089 6.0E-06 GTTATAATTATGA 13 V_BEL1_B_M00312 TRANSFAC - 62886566 62886593 1.0E-06 AAACTGCTTAGGGCAGGCCTGCTTCCCA 28 V_IRX4_01_M01410 TRANSFAC + 62886353 62886369 4.0E-06 TCGATACATGTAAGAAG 17 V_IRX4_01_M01410 TRANSFAC - 62890082 62890098 4.0E-06 TAACAACTTGTTATAAT 17 V_RXRA_04_M02895 TRANSFAC - 62890064 62890079 3.0E-06 TGATGAAGTTTATACT 16 V_MAZ_Q6_01_M02023 TRANSFAC - 62887293 62887306 0.0E+00 GGAGGAGGGAAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 62887358 62887371 8.0E-06 CGAGGTGGGGAGGA 14 V_IRF_Q6_M00772 TRANSFAC + 62884258 62884272 1.0E-06 TGCAGTTTCAGTTCC 15 V_SREBP_Q6_M01168 TRANSFAC + 62889989 62890003 7.0E-06 CTTGTCACCCCACAG 15 V_ISRE_01_M00258 TRANSFAC + 62884260 62884274 0.0E+00 CAGTTTCAGTTCCCT 15 V_OCT1_04_M00138 TRANSFAC - 62890066 62890088 5.0E-06 TTATAATTATGATGAAGTTTATA 23 V_OCT1_08_M01354 TRANSFAC - 62890076 62890091 2.0E-06 TTGTTATAATTATGAT 16 V_TEF_01_M01305 TRANSFAC - 62890040 62890051 0.0E+00 CACATTCCTCTG 12 V_IRX3_01_M01318 TRANSFAC + 62886353 62886369 3.0E-06 TCGATACATGTAAGAAG 17 V_SRF_03_M01304 TRANSFAC - 62885162 62885174 6.0E-06 ATCCTAAAAAGGG 13 V_OCT_Q6_M00795 TRANSFAC + 62889910 62889920 4.0E-06 TTATTTTCATT 11 V_IRX5_01_M01472 TRANSFAC - 62886352 62886368 7.0E-06 TTCTTACATGTATCGAT 17 V_IRX5_01_M01472 TRANSFAC + 62886353 62886369 4.0E-06 TCGATACATGTAAGAAG 17 V_IRX5_01_M01472 TRANSFAC - 62890082 62890098 6.0E-06 TAACAACTTGTTATAAT 17 V_ICSBP_Q6_M00699 TRANSFAC - 62884260 62884271 0.0E+00 GAACTGAAACTG 12 V_IRX3_02_M01485 TRANSFAC + 62886353 62886369 2.0E-06 TCGATACATGTAAGAAG 17 V_IRX3_02_M01485 TRANSFAC - 62890082 62890098 9.0E-06 TAACAACTTGTTATAAT 17 V_OCT1_Q6_M00195 TRANSFAC - 62889909 62889923 6.0E-06 AGGAATGAAAATAAT 15 V_FOXJ3_06_M02855 TRANSFAC + 62889540 62889556 1.0E-05 AGCATCCAAACACATGA 17 V_MYOGNF1_01_M00056 TRANSFAC - 62886740 62886768 4.0E-06 CGGCGCTGCCCTCGGGCGGCCTCCCAGCA 29 V_TEF1_Q6_03_M01817 TRANSFAC + 62890042 62890050 3.0E-06 GAGGAATGT 9 V_DMRT7_01_M01151 TRANSFAC - 62890078 62890091 1.0E-06 TTGTTATAATTATG 14 V_ZFP206_01_M01742 TRANSFAC - 62887040 62887050 0.0E+00 TGCGCATGCGC 11 V_ZFP206_01_M01742 TRANSFAC + 62887063 62887073 1.0E-06 TGCGCAGGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 62887064 62887074 8.0E-06 TGCGCCTGCGC 11 V_ZFP161_04_M02933 TRANSFAC - 62886896 62886909 3.0E-06 TCCGCGCAGTGCTC 14 V_FPM315_01_M01587 TRANSFAC - 62887298 62887309 4.0E-06 GAAGGAGGAGGG 12 V_NRSF_01_M00256 TRANSFAC - 62886726 62886746 0.0E+00 CCCAGCACCAAGCACAGCCGC 21 V_MSX1_01_M00394 TRANSFAC + 62884330 62884338 7.0E-06 CTGTAATTG 9 V_SRF_01_M00152 TRANSFAC + 62889647 62889664 6.0E-06 TTGACCTCATTAGGACTT 18 V_NRF1_Q6_M00652 TRANSFAC + 62887041 62887050 2.0E-06 CGCATGCGCA 10 V_REST_02_M02256 TRANSFAC - 62886726 62886746 7.0E-06 CCCAGCACCAAGCACAGCCGC 21 V_CEBPB_Q6_M01896 TRANSFAC - 62886651 62886660 7.0E-06 TTGTGAAATC 10 V_IRX2_01_M01405 TRANSFAC - 62886352 62886368 4.0E-06 TTCTTACATGTATCGAT 17 V_IRX2_01_M01405 TRANSFAC + 62886353 62886369 2.0E-06 TCGATACATGTAAGAAG 17 V_IRF1_Q6_01_M01881 TRANSFAC + 62884260 62884273 3.0E-06 CAGTTTCAGTTCCC 14 V_SOX8_03_M02808 TRANSFAC - 62889717 62889733 5.0E-06 TTTTGAATTGTTTCGGA 17 V_EWSR1FLI1_01_M02252 TRANSFAC - 62887294 62887311 1.0E-06 GGGAAGGAGGAGGGAAGG 18 V_HOXB3_01_M01330 TRANSFAC + 62889648 62889664 1.0E-05 TGACCTCATTAGGACTT 17 V_SOX1_03_M02802 TRANSFAC + 62884330 62884345 7.0E-06 CTGTAATTGAATGAGT 16 V_PIT1_Q6_M00802 TRANSFAC - 62886353 62886370 1.0E-05 GCTTCTTACATGTATCGA 18 V_PIT1_Q6_M00802 TRANSFAC + 62890074 62890091 0.0E+00 TCATCATAATTATAACAA 18 V_MEF2A_05_M01301 TRANSFAC - 62890079 62890090 7.0E-06 TGTTATAATTAT 12 V_UF1H3BETA_Q6_M01068 TRANSFAC - 62887308 62887321 9.0E-06 GCCGGGGGTGGGGA 14 V_SOX5_07_M02909 TRANSFAC - 62889717 62889733 5.0E-06 TTTTGAATTGTTTCGGA 17 V_IRXB3_01_M01377 TRANSFAC - 62886352 62886368 3.0E-06 TTCTTACATGTATCGAT 17 V_IRXB3_01_M01377 TRANSFAC + 62886353 62886369 4.0E-06 TCGATACATGTAAGAAG 17 V_IRXB3_01_M01377 TRANSFAC - 62890082 62890098 7.0E-06 TAACAACTTGTTATAAT 17 V_RORA2_01_M00157 TRANSFAC - 62889572 62889584 2.0E-06 AAATTTGGGTCAG 13 V_OTX3_01_M01403 TRANSFAC + 62885165 62885181 6.0E-06 TTTTTAGGATTAAACAA 17 V_HOXC8_01_M01321 TRANSFAC - 62890076 62890091 4.0E-06 TTGTTATAATTATGAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.