Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

OGFOD1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55239 2-oxoglutarate and iron-dependent oxygenase domain containing 1 chr16 + 56480423 - 56485923 56485423 Transcription Factor Binding Sites   Download all TFBS in the OGFOD1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX + 56482237 56482252 5.0E-06 GCTAATAATTAATGTC 16 FOXO4_forkhead_DBD_dimeric_14_1 SELEX + 56486137 56486150 8.0E-06 ATACACATGTGGAC 14 FOXO4_forkhead_DBD_dimeric_14_1 SELEX - 56486137 56486150 8.0E-06 GTCCACATGTGTAT 14 GABPA_MA0062.2 JASPAR + 56485256 56485266 1.0E-06 CCGGAAGTGAA 11 DLX1_homeodomain_DBD_monomeric_10_1 SELEX + 56482240 56482249 8.0E-06 AATAATTAAT 10 SPIC_ETS_full_monomeric_14_1 SELEX + 56485570 56485583 3.0E-06 AAAAAGGGAAAGAA 14 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 56486297 56486308 5.0E-06 TATGAAAATAAA 12 Dlx1_homeodomain_DBD_monomeric_8_1 SELEX + 56482241 56482248 4.0E-06 ATAATTAA 8 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 56482230 56482244 4.0E-06 CAATTTGGCTAATAA 15 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 56482230 56482244 4.0E-06 TTATTAGCCAAATTG 15 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 56486000 56486014 5.0E-06 GAATTAACCTTATTA 15 YY1_C2H2_full_monomeric_11_1 SELEX + 56485215 56485225 8.0E-06 CCCGCCATTAA 11 ZNF75A_C2H2_DBD_monomeric_12_1 SELEX - 56485563 56485574 8.0E-06 TTTTTTCCCACC 12 ZNF435_C2H2_full_dimeric_18_1 SELEX + 56482169 56482186 9.0E-06 ATGGTTATCTGAACATTA 18 HNF1B_MA0153.1 JASPAR + 56482238 56482249 1.0E-06 CTAATAATTAAT 12 FOXC1_forkhead_DBD_monomeric_11_1 SELEX + 56486297 56486307 5.0E-06 TATGAAAATAA 11 EWSR1-FLI1_MA0149.1 JASPAR + 56485568 56485585 3.0E-06 GAAAAAAGGGAAAGAAGG 18 ISX_homeodomain_DBD_dimeric_13_1 SELEX + 56486003 56486015 1.0E-05 TTAACCTTATTAA 13 Sox1_HMG_DBD_dimeric_13_1 SELEX - 56485994 56486006 4.0E-06 TTAATTCCATTGC 13 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 56486049 56486062 2.0E-06 TCATAATATTTACC 14 HOXB5_homeodomain_DBD_monomeric_10_1 SELEX + 56482240 56482249 0.0E+00 AATAATTAAT 10 HOXB5_homeodomain_DBD_monomeric_10_1 SELEX - 56482240 56482249 5.0E-06 ATTAATTATT 10 POU4F3_POU_DBD_monomeric_16_1 SELEX + 56482237 56482252 3.0E-06 GCTAATAATTAATGTC 16 PROP1_homeodomain_full_dimeric_11_1 SELEX + 56486004 56486014 8.0E-06 TAACCTTATTA 11 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 56486049 56486062 1.0E-06 TCATAATATTTACC 14 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 56486300 56486310 9.0E-06 GAAAATAAACG 11 Hoxa2_homeodomain_DBD_monomeric_10_1 SELEX + 56482240 56482249 6.0E-06 AATAATTAAT 10 HNF1A_homeodomain_full_dimeric_15_1 SELEX + 56482236 56482250 4.0E-06 GGCTAATAATTAATG 15 HNF1A_homeodomain_full_dimeric_15_1 SELEX - 56482236 56482250 1.0E-06 CATTAATTATTAGCC 15 HOXB2_homeodomain_DBD_monomeric_10_1 SELEX + 56482240 56482249 2.0E-06 AATAATTAAT 10 RAX_homeodomain_DBD_monomeric_10_1 SELEX + 56482240 56482249 9.0E-06 AATAATTAAT 10 HOXD8_homeodomain_DBD_monomeric_10_1 SELEX + 56482240 56482249 4.0E-06 AATAATTAAT 10 DRGX_homeodomain_DBD_dimeric_13_1 SELEX + 56486003 56486015 6.0E-06 TTAACCTTATTAA 13 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 56486049 56486062 8.0E-06 TCATAATATTTACC 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 56486049 56486062 9.0E-06 GGTAAATATTATGA 14 RFX3_RFX_DBD_dimeric_15_1 SELEX + 56485985 56485999 9.0E-06 CGTCGCCAGGCAATG 15 DLX6_homeodomain_DBD_monomeric_8_1 SELEX + 56482241 56482248 9.0E-06 ATAATTAA 8 ESRRG_nuclearreceptor_full_monomeric_10_1 SELEX - 56484231 56484240 1.0E-06 TCAAGGTCAT 10 VAX1_homeodomain_DBD_monomeric_8_1 SELEX - 56482241 56482248 9.0E-06 TTAATTAT 8 Lhx3_MA0135.1 JASPAR - 56482239 56482251 1.0E-06 ACATTAATTATTA 13 DLX3_homeodomain_DBD_monomeric_8_1 SELEX + 56482241 56482248 9.0E-06 ATAATTAA 8 MYBL1_MYB_DBD_dimeric_17_1 SELEX - 56486004 56486020 8.0E-06 GAAGTTTAATAAGGTTA 17 HNF1B_homeodomain_full_dimeric_13_1 SELEX + 56482237 56482249 0.0E+00 GCTAATAATTAAT 13 HNF1B_homeodomain_full_dimeric_13_1 SELEX - 56482237 56482249 4.0E-06 ATTAATTATTAGC 13 CART1_homeodomain_DBD_dimeric_13_1 SELEX + 56486003 56486015 6.0E-06 TTAACCTTATTAA 13 Hoxd3_homeodomain_DBD_monomeric_10_1 SELEX + 56482240 56482249 3.0E-06 AATAATTAAT 10 Esrra_nuclearreceptor_DBD_monomeric_11_1 SELEX - 56484231 56484241 0.0E+00 TTCAAGGTCAT 11 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX + 56485570 56485584 7.0E-06 AAAAAGGGAAAGAAG 15 HOXB3_homeodomain_DBD_monomeric_10_1 SELEX + 56482240 56482249 3.0E-06 AATAATTAAT 10 ESRRB_nuclearreceptor_DBD_monomeric_11_1 SELEX - 56484230 56484240 0.0E+00 TCAAGGTCATT 11 GABPA_ETS_full_monomeric_10_1 SELEX + 56485255 56485264 9.0E-06 GCCGGAAGTG 10 ETS1_ETS_full_dimeric_18_1 SELEX - 56485255 56485272 8.0E-06 TCCGGGTTCACTTCCGGC 18 VDR_nuclearreceptor_full_dimeric_16_1 SELEX - 56485054 56485069 2.0E-06 GGGGTCACTCAGTTCG 16 TP53_MA0106.1 JASPAR + 56485445 56485464 4.0E-06 GGGGACATGCCGGGAGTTGC 20 HNF1B_homeodomain_full_dimeric_15_1 SELEX + 56482236 56482250 4.0E-06 GGCTAATAATTAATG 15 HNF1B_homeodomain_full_dimeric_15_1 SELEX - 56482236 56482250 1.0E-06 CATTAATTATTAGCC 15 RORA_1_MA0071.1 JASPAR - 56484232 56484241 3.0E-06 TTCAAGGTCA 10 MNX1_homeodomain_DBD_monomeric_10_1 SELEX + 56482240 56482249 4.0E-06 AATAATTAAT 10 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 56486298 56486310 2.0E-06 ATGAAAATAAACG 13 FOXO6_forkhead_DBD_dimeric_14_1 SELEX + 56486137 56486150 3.0E-06 ATACACATGTGGAC 14 FOXO6_forkhead_DBD_dimeric_14_1 SELEX - 56486137 56486150 3.0E-06 GTCCACATGTGTAT 14 POU4F1_POU_DBD_monomeric_14_1 SELEX + 56482237 56482250 2.0E-06 GCTAATAATTAATG 14 DLX5_homeodomain_FL_monomeric_8_1 SELEX + 56482241 56482248 8.0E-06 ATAATTAA 8 Zfx_MA0146.1 JASPAR + 56485639 56485652 6.0E-06 GTGGCTGAGGCCTG 14 FOXO1_forkhead_DBD_dimeric_14_1 SELEX + 56486137 56486150 2.0E-06 ATACACATGTGGAC 14 FOXO1_forkhead_DBD_dimeric_14_1 SELEX - 56486137 56486150 4.0E-06 GTCCACATGTGTAT 14 V_KLF15_Q2_M01714 TRANSFAC + 56484889 56484902 8.0E-06 GAGGCGGGGAGGTG 14 V_APOLYA_B_M00310 TRANSFAC + 56486303 56486317 1.0E-06 AATAAACGCGCTTTG 15 V_CHOP_01_M00249 TRANSFAC + 56485189 56485201 6.0E-06 ATCTGCAATCCCC 13 V_ZFX_01_M01593 TRANSFAC + 56484977 56484992 4.0E-06 GCCAAGGCCGCGCCGC 16 V_RORA1_01_M00156 TRANSFAC - 56484231 56484243 0.0E+00 ATTTCAAGGTCAT 13 V_NKX29_01_M01352 TRANSFAC - 56486442 56486458 4.0E-06 TTCAAAGCACTTGACAA 17 V_ERR3_Q2_01_M02094 TRANSFAC - 56484230 56484242 1.0E-06 TTTCAAGGTCATT 13 V_LRH1_Q5_01_M02098 TRANSFAC - 56484232 56484242 0.0E+00 TTTCAAGGTCA 11 V_CBF_02_M01080 TRANSFAC + 56486139 56486154 1.0E-05 ACACATGTGGACAAAT 16 V_OCT1_Q5_01_M00930 TRANSFAC - 56486297 56486307 1.0E-06 TTATTTTCATA 11 V_IRF_Q6_01_M00972 TRANSFAC + 56485571 56485581 7.0E-06 AAAAGGGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC + 56485569 56485584 7.0E-06 AAAAAAGGGAAAGAAG 16 V_GCNF_Q3_M02009 TRANSFAC - 56484230 56484239 9.0E-06 CAAGGTCATT 10 V_HOXA4_01_M01370 TRANSFAC + 56482236 56482252 1.0E-06 GGCTAATAATTAATGTC 17 V_ATF3_Q6_01_M01863 TRANSFAC - 56486164 56486174 7.0E-06 ATGACATCAGC 11 V_HOXC4_01_M01369 TRANSFAC - 56482236 56482252 9.0E-06 GACATTAATTATTAGCC 17 V_OCT_C_M00210 TRANSFAC - 56486296 56486308 1.0E-06 TTTATTTTCATAC 13 V_NKX61_03_M01489 TRANSFAC + 56482236 56482252 2.0E-06 GGCTAATAATTAATGTC 17 V_NKX61_03_M01489 TRANSFAC - 56482237 56482253 4.0E-06 GGACATTAATTATTAGC 17 V_HOXC6_01_M01406 TRANSFAC - 56482236 56482252 8.0E-06 GACATTAATTATTAGCC 17 V_OCTAMER_02_M01477 TRANSFAC - 56482237 56482253 9.0E-06 GGACATTAATTATTAGC 17 V_NERF_Q2_M00531 TRANSFAC + 56485281 56485298 9.0E-06 CGGCAGGAAGTAGAGGGG 18 V_LHX3_01_M01471 TRANSFAC - 56482236 56482252 8.0E-06 GACATTAATTATTAGCC 17 V_NKX24_01_M01350 TRANSFAC - 56486441 56486456 3.0E-06 CAAAGCACTTGACAAC 16 V_AFP1_Q6_M00616 TRANSFAC + 56485221 56485231 5.0E-06 ATTAACAGGAC 11 V_E2A_Q2_M00804 TRANSFAC - 56485629 56485642 9.0E-06 CCACCTGCTTTTTC 14 V_LHX3A_01_M00510 TRANSFAC - 56482241 56482250 4.0E-06 CATTAATTAT 10 V_PAX6_02_M01391 TRANSFAC + 56482238 56482253 8.0E-06 CTAATAATTAATGTCC 16 V_NKX62_Q2_M00489 TRANSFAC + 56482238 56482249 8.0E-06 CTAATAATTAAT 12 V_NKX62_Q2_M00489 TRANSFAC - 56482240 56482251 1.0E-05 ACATTAATTATT 12 V_BARBIE_01_M00238 TRANSFAC + 56485628 56485642 5.0E-06 TGAAAAAGCAGGTGG 15 V_RPC155_01_M01798 TRANSFAC - 56484810 56484825 9.0E-06 TCCAGGGTTAGAGTCC 16 V_EN1_02_M01365 TRANSFAC + 56482236 56482251 1.0E-05 GGCTAATAATTAATGT 16 V_EN1_02_M01365 TRANSFAC - 56482238 56482253 5.0E-06 GGACATTAATTATTAG 16 V_DBX2_01_M01360 TRANSFAC + 56482236 56482251 4.0E-06 GGCTAATAATTAATGT 16 V_DBX2_01_M01360 TRANSFAC - 56482238 56482253 1.0E-06 GGACATTAATTATTAG 16 V_HOXB13_01_M01467 TRANSFAC + 56486005 56486020 8.0E-06 AACCTTATTAAACTTC 16 V_ZFP410_03_M02832 TRANSFAC + 56486035 56486051 5.0E-06 TAAAATGGGATAGTTCA 17 V_HNF1_Q6_M00790 TRANSFAC + 56482235 56482252 1.0E-06 TGGCTAATAATTAATGTC 18 V_ER81_02_M02065 TRANSFAC + 56485255 56485264 1.0E-05 GCCGGAAGTG 10 V_HNF1B_04_M02266 TRANSFAC + 56482238 56482249 1.0E-06 CTAATAATTAAT 12 V_IRF3_Q3_M01279 TRANSFAC - 56485572 56485584 3.0E-06 CTTCTTTCCCTTT 13 V_PMX2A_01_M01444 TRANSFAC - 56482238 56482253 1.0E-06 GGACATTAATTATTAG 16 V_HNF1_Q6_01_M01011 TRANSFAC - 56482233 56482253 8.0E-06 GGACATTAATTATTAGCCAAA 21 V_NKX22_02_M01372 TRANSFAC - 56486440 56486456 5.0E-06 CAAAGCACTTGACAACG 17 V_GADP_01_M01258 TRANSFAC - 56485253 56485264 1.0E-06 CACTTCCGGCGT 12 V_ERR1_Q3_M01841 TRANSFAC + 56484229 56484243 0.0E+00 GAATGACCTTGAAAT 15 V_DAX1_01_M01248 TRANSFAC - 56484226 56484245 2.0E-06 GCATTTCAAGGTCATTCTCA 20 V_TEL2_Q6_M00678 TRANSFAC - 56485256 56485265 9.0E-06 TCACTTCCGG 10 V_TEL2_Q6_M00678 TRANSFAC - 56485284 56485293 1.0E-06 CTACTTCCTG 10 V_PNR_01_M01650 TRANSFAC + 56485942 56485955 2.0E-06 GGAGTCAAAGATTA 14 V_PROP1_02_M01320 TRANSFAC - 56482236 56482252 8.0E-06 GACATTAATTATTAGCC 17 V_POU6F1_01_M00465 TRANSFAC - 56482241 56482251 2.0E-06 ACATTAATTAT 11 V_PMX2B_01_M01356 TRANSFAC + 56482236 56482252 7.0E-06 GGCTAATAATTAATGTC 17 V_PMX2B_01_M01356 TRANSFAC - 56482237 56482253 5.0E-06 GGACATTAATTATTAGC 17 V_SP3_Q3_M00665 TRANSFAC + 56485755 56485768 2.0E-06 AGCCTTGGGCAGCG 14 V_NKX63_01_M01470 TRANSFAC + 56482236 56482252 1.0E-06 GGCTAATAATTAATGTC 17 V_NKX63_01_M01470 TRANSFAC - 56482237 56482253 6.0E-06 GGACATTAATTATTAGC 17 V_OCT1_B_M00342 TRANSFAC + 56486297 56486306 9.0E-06 TATGAAAATA 10 V_OCT_Q6_M00795 TRANSFAC - 56486297 56486307 1.0E-06 TTATTTTCATA 11 V_NKX23_01_M01457 TRANSFAC - 56486443 56486458 8.0E-06 TTCAAAGCACTTGACA 16 V_HOXB4_01_M01424 TRANSFAC - 56482236 56482252 3.0E-06 GACATTAATTATTAGCC 17 V_SF1_Q6_01_M01132 TRANSFAC + 56484232 56484240 3.0E-06 TGACCTTGA 9 V_HOXB7_01_M01396 TRANSFAC + 56482238 56482253 1.0E-06 CTAATAATTAATGTCC 16 V_LRH1_Q5_M01142 TRANSFAC + 56484231 56484242 3.0E-06 ATGACCTTGAAA 12 V_HOXA7_02_M01336 TRANSFAC - 56482236 56482252 1.0E-06 GACATTAATTATTAGCC 17 V_HOXA7_02_M01336 TRANSFAC + 56482237 56482253 6.0E-06 GCTAATAATTAATGTCC 17 V_TTF1_Q5_M02034 TRANSFAC - 56486441 56486454 1.0E-06 AAGCACTTGACAAC 14 V_AP3_Q6_M00690 TRANSFAC - 56485860 56485867 5.0E-06 TCTAAATT 8 V_MYOD_Q6_01_M00929 TRANSFAC + 56485630 56485647 5.0E-06 AAAAAGCAGGTGGCTGAG 18 V_CNOT3_01_M01253 TRANSFAC + 56484982 56484991 4.0E-06 GGCCGCGCCG 10 V_OCT1_Q6_M00195 TRANSFAC + 56486294 56486308 9.0E-06 ATGTATGAAAATAAA 15 V_LUN1_01_M00480 TRANSFAC - 56486028 56486044 5.0E-06 TCCCATTTTACTTAGGA 17 V_EBNA1_01_M01745 TRANSFAC - 56485155 56485170 1.0E-05 GAAAGTCTACCCTGCC 16 V_MYOGNF1_01_M00056 TRANSFAC - 56486127 56486155 7.0E-06 TATTTGTCCACATGTGTATTGGGCCTTAC 29 V_ERR1_Q2_M00511 TRANSFAC - 56484230 56484243 0.0E+00 ATTTCAAGGTCATT 14 V_ERR2_01_M01589 TRANSFAC - 56484229 56484240 5.0E-06 TCAAGGTCATTC 12 V_NKX61_02_M01469 TRANSFAC + 56482240 56482255 3.0E-06 AATAATTAATGTCCCC 16 V_CDP_01_M00095 TRANSFAC + 56482238 56482249 2.0E-06 CTAATAATTAAT 12 V_MSX1_02_M01412 TRANSFAC + 56482236 56482251 0.0E+00 GGCTAATAATTAATGT 16 V_MSX1_02_M01412 TRANSFAC - 56482238 56482253 3.0E-06 GGACATTAATTATTAG 16 V_NKX22_01_M00485 TRANSFAC + 56486445 56486454 6.0E-06 TCAAGTGCTT 10 V_LMX1B_01_M01363 TRANSFAC + 56482236 56482252 7.0E-06 GGCTAATAATTAATGTC 17 V_TBX15_02_M01264 TRANSFAC + 56484898 56484915 9.0E-06 AGGTGCAGAGGCGTGAAG 18 V_ESRRA_03_M02748 TRANSFAC - 56484227 56484243 0.0E+00 ATTTCAAGGTCATTCTC 17 V_IRF1_Q6_01_M01881 TRANSFAC - 56485570 56485583 9.0E-06 TTCTTTCCCTTTTT 14 V_IRC900814_03_M02766 TRANSFAC - 56486222 56486237 4.0E-06 GCTCACGACAAATGCC 16 V_MYF6_03_M02781 TRANSFAC + 56485630 56485645 5.0E-06 AAAAAGCAGGTGGCTG 16 V_HB9_01_M01349 TRANSFAC + 56482238 56482253 5.0E-06 CTAATAATTAATGTCC 16 V_EWSR1FLI1_01_M02252 TRANSFAC + 56485568 56485585 3.0E-06 GAAAAAAGGGAAAGAAGG 18 V_HNF1A_Q5_M02013 TRANSFAC + 56482236 56482246 6.0E-06 GGCTAATAATT 11 V_HOXD8_01_M01432 TRANSFAC - 56482235 56482251 4.0E-06 ACATTAATTATTAGCCA 17 V_HOXD8_01_M01432 TRANSFAC + 56482238 56482254 3.0E-06 CTAATAATTAATGTCCC 17 V_LHX9_01_M01367 TRANSFAC - 56482236 56482252 7.0E-06 GACATTAATTATTAGCC 17 V_LHX9_01_M01367 TRANSFAC + 56482237 56482253 5.0E-06 GCTAATAATTAATGTCC 17 V_HOXA7_03_M01394 TRANSFAC + 56482238 56482253 2.0E-06 CTAATAATTAATGTCC 16 V_LHX5_01_M01353 TRANSFAC - 56482236 56482252 7.0E-06 GACATTAATTATTAGCC 17 V_BRN3C_01_M01408 TRANSFAC - 56482238 56482253 8.0E-06 GGACATTAATTATTAG 16 V_HOXA10_01_M01464 TRANSFAC + 56486045 56486060 9.0E-06 TAGTTCATAATATTTA 16 V_SEF1_C_M00214 TRANSFAC - 56485103 56485121 1.0E-06 CGCCAGCATGTCTGTGGTA 19 V_HOXC9_01_M01416 TRANSFAC - 56482241 56482256 4.0E-06 GGGGGACATTAATTAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.