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VRTN Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55237 vertebrae development associated chr14 + 74810165 - 74815665 74815165 Transcription Factor Binding Sites   Download all TFBS in the VRTN promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints TBX20_TBX_full_monomeric_11_1 SELEX + 74817460 74817470 1.0E-06 TAGGTGTGATG 11 FOXJ2_forkhead_DBD_dimeric_13_1 SELEX + 74817509 74817521 8.0E-06 ATAAACAAAATTA 13 FOXJ2_forkhead_DBD_monomeric_8_1 SELEX + 74817509 74817516 5.0E-06 ATAAACAA 8 Sox1_HMG_DBD_dimeric_14_1 SELEX + 74817470 74817483 6.0E-06 GGAATTGTAGTTCA 14 Sox1_HMG_DBD_dimeric_14_1 SELEX - 74817470 74817483 5.0E-06 TGAACTACAATTCC 14 TBR1_TBX_DBD_monomeric_10_1 SELEX + 74817424 74817433 3.0E-06 AGGTGTGAAC 10 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 74815141 74815151 6.0E-06 GCCACTCCCCC 11 Zfp652_C2H2_DBD_monomeric_13_1 SELEX + 74814299 74814311 0.0E+00 CCAAAGGGTTAAA 13 FOXC2_forkhead_DBD_monomeric_12_1 SELEX + 74817506 74817517 6.0E-06 CATATAAACAAA 12 Zfp423_MA0116.1 JASPAR + 74814324 74814338 8.0E-06 AGCCCCTTGGGGGGA 15 TFAP2A_TFAP_DBD_dimeric_11_1 SELEX + 74814006 74814016 8.0E-06 AGCCTCAGGCC 11 Klf4_MA0039.2 JASPAR + 74814031 74814040 5.0E-06 TGGGTGGGGC 10 LEF1_HMG_DBD_monomeric_15_1 SELEX - 74815094 74815108 5.0E-06 CAAGATGAAAGAAGT 15 EOMES_TBX_DBD_monomeric_13_1 SELEX + 74817423 74817435 7.0E-06 CAGGTGTGAACTC 13 REL_MA0101.1 JASPAR - 74814320 74814329 6.0E-06 GGGGCTTTCC 10 T_MA0009.1 JASPAR + 74817422 74817432 4.0E-06 CCAGGTGTGAA 11 T_MA0009.1 JASPAR + 74817459 74817469 2.0E-06 GTAGGTGTGAT 11 Foxq1_MA0040.1 JASPAR - 74817508 74817518 4.0E-06 TTTTGTTTATA 11 FOXO4_forkhead_DBD_putatively-multimeric_12_1 SELEX + 74815272 74815283 1.0E-06 TTTCCCCACAGG 12 SP1_MA0079.2 JASPAR + 74814925 74814934 3.0E-06 CCCCTCCCCC 10 TBR1_TBX_full_monomeric_11_1 SELEX + 74817423 74817433 5.0E-06 CAGGTGTGAAC 11 FOXI1_MA0042.1 JASPAR - 74817507 74817518 3.0E-06 TTTTGTTTATAT 12 NFIX_NFI_full_monomeric_9_2 SELEX - 74813965 74813973 8.0E-06 AATGCCAAT 9 SRY_MA0084.1 JASPAR + 74813924 74813932 1.0E-06 TTAAACAAT 9 SP4_C2H2_full_monomeric_17_1 SELEX - 74815138 74815154 7.0E-06 TAAGCCACTCCCCCCAG 17 TFCP2_CP2_full_dimeric_10_1 SELEX + 74815219 74815228 7.0E-06 AAACTGGTTC 10 SOX14_HMG_DBD_dimeric_15_1 SELEX - 74813962 74813976 7.0E-06 TTGAATGCCAATCCT 15 TBX21_TBX_full_monomeric_10_1 SELEX + 74817423 74817432 6.0E-06 CAGGTGTGAA 10 TBX21_TBX_full_monomeric_10_1 SELEX + 74817460 74817469 5.0E-06 TAGGTGTGAT 10 FEV_MA0156.1 JASPAR - 74815133 74815140 1.0E-05 CAGGAAAT 8 TBX20_TBX_DBD_monomeric_15_1 SELEX + 74817420 74817434 9.0E-06 CTCCAGGTGTGAACT 15 TBX20_TBX_DBD_monomeric_15_1 SELEX + 74817457 74817471 9.0E-06 GCGTAGGTGTGATGG 15 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX + 74815272 74815282 2.0E-06 TTTCCCCACAG 11 Sox3_HMG_DBD_dimeric_17_3 SELEX - 74813961 74813977 8.0E-06 TTTGAATGCCAATCCTG 17 FOXO6_forkhead_DBD_putatively-multimeric_14_1 SELEX + 74815272 74815285 7.0E-06 TTTCCCCACAGGGT 14 Foxj3_forkhead_DBD_monomeric_8_1 SELEX + 74817509 74817516 5.0E-06 ATAAACAA 8 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX + 74815272 74815283 1.0E-06 TTTCCCCACAGG 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 74817507 74817519 4.0E-06 ATATAAACAAAAT 13 FOXO6_forkhead_DBD_dimeric_14_1 SELEX - 74817509 74817522 7.0E-06 GTAATTTTGTTTAT 14 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 74817509 74817521 4.0E-06 ATAAACAAAATTA 13 V_MEQ_01_M02049 TRANSFAC - 74815498 74815506 9.0E-06 GACACACAT 9 V_FOXP1_01_M00987 TRANSFAC - 74817509 74817528 9.0E-06 TCAGTGGTAATTTTGTTTAT 20 RXR_RAR_DR5_MA0159.1 JASPAR - 74814954 74814970 3.0E-06 AGTTGAAAGAAAGTTGA 17 V_FREAC7_01_M00293 TRANSFAC + 74817504 74817519 2.0E-06 CACATATAAACAAAAT 16 V_XFD1_01_M00267 TRANSFAC + 74817506 74817519 0.0E+00 CATATAAACAAAAT 14 V_SOX14_05_M02902 TRANSFAC + 74815623 74815637 9.0E-06 CCTACACAATGGTCT 15 V_ZFP410_04_M02936 TRANSFAC - 74813952 74813968 8.0E-06 CAATCCTGCCCCTTACT 17 V_FOXA2_04_M02749 TRANSFAC + 74817504 74817520 2.0E-06 CACATATAAACAAAATT 17 V_NKX29_01_M01352 TRANSFAC - 74817316 74817332 5.0E-06 TTCTAAGCACTATAATT 17 V_FOXO4_02_M00476 TRANSFAC - 74817506 74817519 1.0E-06 ATTTTGTTTATATG 14 V_RELBP52_01_M01239 TRANSFAC - 74814320 74814329 4.0E-06 GGGGCTTTCC 10 V_EOMES_03_M02747 TRANSFAC - 74816652 74816668 1.0E-05 GAAAAGGTATGAAACCA 17 V_TBR2_01_M01774 TRANSFAC + 74817424 74817432 3.0E-06 AGGTGTGAA 9 V_TBR2_01_M01774 TRANSFAC + 74817461 74817469 6.0E-06 AGGTGTGAT 9 V_ZFP740_03_M02834 TRANSFAC + 74815555 74815570 3.0E-06 TCCCCACCCCCACCTC 16 V_ZFP740_03_M02834 TRANSFAC + 74815585 74815600 8.0E-06 TCCCCACCCCCACCCG 16 V_FOXO3A_Q1_M01137 TRANSFAC + 74817508 74817519 0.0E+00 TATAAACAAAAT 12 V_MAF_Q6_M00648 TRANSFAC + 74814331 74814346 5.0E-06 TGGGGGGAAGCTGCCA 16 V_FOXJ1_03_M02750 TRANSFAC + 74817506 74817521 0.0E+00 CATATAAACAAAATTA 16 V_SP1_03_M02281 TRANSFAC + 74814925 74814934 3.0E-06 CCCCTCCCCC 10 V_GKLF_02_M01588 TRANSFAC - 74814029 74814040 3.0E-06 GCCCCACCCACC 12 V_PITX2_Q6_M02114 TRANSFAC - 74814408 74814417 6.0E-06 AATAATCCCA 10 V_SP1_02_M01303 TRANSFAC - 74815554 74815564 5.0E-06 GGGGTGGGGAG 11 V_FOXP3_01_M01599 TRANSFAC + 74817509 74817516 5.0E-06 ATAAACAA 8 V_BARBIE_01_M00238 TRANSFAC + 74817371 74817385 6.0E-06 TTTAAAAGCTGTGTG 15 V_CRX_Q4_M00623 TRANSFAC + 74816590 74816602 6.0E-06 CTTCTAATCTCAG 13 V_CEBPE_Q6_M01868 TRANSFAC - 74814941 74814954 1.0E-06 AAAGATTTCCAAAG 14 V_ZFP105_03_M02827 TRANSFAC + 74817508 74817522 3.0E-06 TATAAACAAAATTAC 15 V_FOXO1_02_M00474 TRANSFAC - 74817506 74817519 3.0E-06 ATTTTGTTTATATG 14 V_SOX7_04_M02911 TRANSFAC - 74817504 74817525 7.0E-06 GTGGTAATTTTGTTTATATGTG 22 V_CREL_01_M00053 TRANSFAC - 74814320 74814329 6.0E-06 GGGGCTTTCC 10 Ddit3_Cebpa_MA0019.1 JASPAR + 74816622 74816633 7.0E-06 CTGTGCAATCCC 12 V_MAZ_Q6_01_M02023 TRANSFAC - 74814921 74814934 0.0E+00 GGGGGAGGGGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 74815552 74815565 1.0E-05 GGGGGTGGGGAGAA 14 V_HNF3_Q6_M00791 TRANSFAC + 74817505 74817517 8.0E-06 ACATATAAACAAA 13 V_SOX_Q6_M01014 TRANSFAC - 74814749 74814761 4.0E-06 CTCTTTGTGAGGC 13 V_TTF1_Q6_M00794 TRANSFAC - 74815115 74815126 1.0E-06 CCCTCAAGTGCT 12 V_ISRE_01_M00258 TRANSFAC - 74815210 74815224 3.0E-06 CAGTTTCATATCTGT 15 V_TCF7_03_M02817 TRANSFAC - 74814957 74814973 8.0E-06 AAAAGTTGAAAGAAAGT 17 V_RREB1_01_M00257 TRANSFAC + 74815586 74815599 5.0E-06 CCCCACCCCCACCC 14 V_KLF7_03_M02773 TRANSFAC + 74816579 74816594 9.0E-06 TTACCCCCGCCCTTCT 16 V_XFD2_01_M00268 TRANSFAC + 74817506 74817519 2.0E-06 CATATAAACAAAAT 14 V_HFH1_01_M00129 TRANSFAC - 74817507 74817518 1.0E-06 TTTTGTTTATAT 12 V_BLIMP1_Q6_M01066 TRANSFAC - 74814914 74814929 5.0E-06 AGGGGAGGGAATGGGA 16 V_FOXO1_Q5_M01216 TRANSFAC + 74817509 74817517 2.0E-06 ATAAACAAA 9 V_GLI3_01_M01596 TRANSFAC + 74817379 74817389 3.0E-06 CTGTGTGGTCT 11 V_FREAC2_01_M00290 TRANSFAC + 74817504 74817519 2.0E-06 CACATATAAACAAAAT 16 V_HFH8_01_M00294 TRANSFAC - 74817506 74817518 0.0E+00 TTTTGTTTATATG 13 V_RARA_04_M02891 TRANSFAC + 74814999 74815014 2.0E-06 AGAGCTGGGTCAGGGC 16 V_TTF1_Q5_M02034 TRANSFAC + 74815114 74815127 1.0E-06 GAGCACTTGAGGGT 14 V_MAZR_01_M00491 TRANSFAC - 74815583 74815595 9.0E-06 GGGGGTGGGGACA 13 V_OSR2_04_M02889 TRANSFAC + 74817393 74817408 9.0E-06 GAAAGCTACTTAATGT 16 V_TCFE2A_03_M02823 TRANSFAC + 74817418 74817434 8.0E-06 ACCTCCAGGTGTGAACT 17 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC + 74815122 74815130 8.0E-06 GAGGGTGGG 9 V_AP1FJ_Q2_M00172 TRANSFAC + 74815283 74815293 6.0E-06 GGTGACTTAAA 11 V_OCT1_Q6_M00195 TRANSFAC - 74815085 74815099 8.0E-06 AGAAGTGCAAATTCG 15 V_FOXL1_04_M02753 TRANSFAC + 74817504 74817520 1.0E-06 CACATATAAACAAAATT 17 V_NKX3A_02_M01383 TRANSFAC - 74817316 74817332 9.0E-06 TTCTAAGCACTATAATT 17 V_CBF_01_M01079 TRANSFAC - 74817516 74817531 6.0E-06 TTTTCAGTGGTAATTT 16 V_PITX2_Q2_M00482 TRANSFAC - 74814407 74814417 3.0E-06 AATAATCCCAG 11 V_STAT6_02_M00500 TRANSFAC + 74815132 74815139 1.0E-05 GATTTCCT 8 V_ZFP281_01_M01597 TRANSFAC - 74814371 74814381 1.0E-05 TGGGGGAGGTG 11 V_ZFP281_01_M01597 TRANSFAC - 74814925 74814935 2.0E-06 GGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 74815556 74815566 1.0E-06 TGGGGGTGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 74815586 74815596 1.0E-06 TGGGGGTGGGG 11 V_TBX5_Q5_M01044 TRANSFAC - 74817423 74817432 5.0E-06 TTCACACCTG 10 V_TBX5_Q5_M01044 TRANSFAC - 74817460 74817469 7.0E-06 ATCACACCTA 10 V_OSR1_04_M02888 TRANSFAC + 74817393 74817408 2.0E-06 GAAAGCTACTTAATGT 16 V_RXR_RAR_01_M02272 TRANSFAC - 74814954 74814970 3.0E-06 AGTTGAAAGAAAGTTGA 17 V_ZFP281_04_M02831 TRANSFAC + 74814369 74814383 3.0E-06 TTCACCTCCCCCATC 15 V_ZFP281_04_M02831 TRANSFAC + 74814924 74814938 7.0E-06 TCCCCTCCCCCCAAA 15 V_ZFP281_04_M02831 TRANSFAC + 74815554 74815568 5.0E-06 CTCCCCACCCCCACC 15 V_ZFP281_04_M02831 TRANSFAC + 74815584 74815598 4.0E-06 GTCCCCACCCCCACC 15 V_GATA2_03_M00349 TRANSFAC + 74815210 74815219 7.0E-06 ACAGATATGA 10 V_HFH3_01_M00289 TRANSFAC - 74817506 74817518 4.0E-06 TTTTGTTTATATG 13 V_FOXJ2_01_M00422 TRANSFAC + 74817503 74817520 5.0E-06 CCACATATAAACAAAATT 18 V_FOXO1_01_M00473 TRANSFAC + 74817508 74817517 2.0E-06 TATAAACAAA 10 V_FOXO4_01_M00472 TRANSFAC + 74817509 74817519 2.0E-06 ATAAACAAAAT 11 V_AP2ALPHA_02_M01045 TRANSFAC + 74814004 74814018 3.0E-06 ACAGCCTCAGGCCAC 15 V_UF1H3BETA_Q6_M01068 TRANSFAC - 74815555 74815568 0.0E+00 GGTGGGGGTGGGGA 14 V_UF1H3BETA_Q6_M01068 TRANSFAC - 74815585 74815598 0.0E+00 GGTGGGGGTGGGGA 14 V_FEV_01_M02269 TRANSFAC - 74815133 74815140 1.0E-05 CAGGAAAT 8 V_DMRT1_01_M01146 TRANSFAC - 74815530 74815544 2.0E-06 TTGAAACAATGCGTC 15 V_FOXK1_03_M02752 TRANSFAC + 74817504 74817520 1.0E-06 CACATATAAACAAAATT 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.