Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RNMTL1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55178 RNA methyltransferase like 1 chr17 + 680512 - 686012 685512 Transcription Factor Binding Sites   Download all TFBS in the RNMTL1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints NFIA_NFI_full_dimeric_15_1 SELEX - 686418 686432 3.0E-06 TTGGCACAGCTCCAG 15 MAX_bHLH_DBD_dimeric_10_1 SELEX - 684456 684465 1.0E-05 AACACGTGCC 10 Mafb_bZIP_DBD_monomeric_12_1 SELEX + 684421 684432 7.0E-06 AAAGTGCTGAGA 12 NFIX_NFI_full_dimeric_15_2 SELEX + 686418 686432 7.0E-06 CTGGAGCTGTGCCAA 15 Creb5_bZIP_DBD_dimeric_12_1 SELEX + 685560 685571 7.0E-06 CGTGACGTCACT 12 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 685145 685158 3.0E-06 AATAAACGTTTACG 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 685145 685158 4.0E-06 CGTAAACGTTTATT 14 JDP2_bZIP_full_dimeric_12_1 SELEX + 685560 685571 9.0E-06 CGTGACGTCACT 12 JDP2_bZIP_full_dimeric_12_1 SELEX - 685560 685571 1.0E-05 AGTGACGTCACG 12 RUNX3_RUNX_full_monomeric_10_1 SELEX - 684518 684527 1.0E-05 AAACCACAGA 10 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 685145 685158 4.0E-06 AATAAACGTTTACG 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 685145 685158 5.0E-06 CGTAAACGTTTATT 14 MNT_bHLH_DBD_dimeric_10_1 SELEX - 684456 684465 4.0E-06 AACACGTGCC 10 ATF7_bZIP_DBD_dimeric_14_1 SELEX + 685559 685572 6.0E-06 CCGTGACGTCACTA 14 ATF7_bZIP_DBD_dimeric_14_1 SELEX - 685559 685572 6.0E-06 TAGTGACGTCACGG 14 CREB3_bZIP_full_dimeric_14_1 SELEX - 685559 685572 5.0E-06 TAGTGACGTCACGG 14 NFATC1_NFAT_full_dimeric_20_1 SELEX - 685730 685749 8.0E-06 GAAGGAAACACCACTTTCAC 20 SOX15_HMG_full_dimeric_15_1 SELEX - 686431 686445 7.0E-06 AAGAAGAACATTTTT 15 NFATC1_NFAT_full_dimeric_15_1 SELEX + 684525 684539 3.0E-06 TTTCTGCTATCGAAA 15 NFATC1_NFAT_full_dimeric_15_1 SELEX - 684525 684539 3.0E-06 TTTCGATAGCAGAAA 15 YY2_C2H2_full_monomeric_11_1 SELEX - 685616 685626 8.0E-06 GCCGCCATGTT 11 PRDM4_C2H2_full_monomeric_13_1 SELEX + 684785 684797 1.0E-06 TTTCAAGTCTTCC 13 NFIB_NFI_full_dimeric_15_1 SELEX - 686418 686432 2.0E-06 TTGGCACAGCTCCAG 15 RUNX1_MA0002.2 JASPAR + 684517 684527 1.0E-06 CTCTGTGGTTT 11 REST_MA0138.2 JASPAR - 685244 685264 7.0E-06 TTCAGGAGCGTGGCGAGTTGC 21 PLAG1_MA0163.1 JASPAR - 685383 685396 5.0E-06 GGGGCCGACAGGGG 14 NFIA_NFI_full_monomeric_10_1 SELEX + 686425 686434 9.0E-06 TGTGCCAAAA 10 Zfx_MA0146.1 JASPAR + 685389 685402 9.0E-06 TCGGCCCCGGCCTG 14 V_ELF5_03_M02057 TRANSFAC + 684493 684502 5.0E-06 CGAGGAAATA 10 V_E2A_Q6_01_M02088 TRANSFAC - 685663 685675 8.0E-06 GACCACCTGCAGC 13 V_AML_Q6_M00769 TRANSFAC + 684515 684529 3.0E-06 AGCTCTGTGGTTTCT 15 V_YY1_02_M00069 TRANSFAC - 685609 685628 6.0E-06 GCGCCGCCATGTTCCCTGAG 20 V_NF1_Q6_01_M00806 TRANSFAC + 686418 686434 5.0E-06 CTGGAGCTGTGCCAAAA 17 V_ZFX_01_M01593 TRANSFAC - 685390 685405 6.0E-06 GTGCAGGCCGGGGCCG 16 V_PAX4_03_M00378 TRANSFAC + 684606 684617 4.0E-06 AACTCCCACCCC 12 V_NF1A_Q6_M02103 TRANSFAC + 686418 686433 8.0E-06 CTGGAGCTGTGCCAAA 16 V_CREB_Q4_01_M00917 TRANSFAC + 685559 685569 5.0E-06 CCGTGACGTCA 11 V_ZTA_Q2_M00711 TRANSFAC - 687517 687529 3.0E-06 TCCCTGTGACTCA 13 V_GABPA_04_M02858 TRANSFAC + 685323 685338 2.0E-06 CCATTTTCCCCTCCCT 16 V_NKX24_01_M01350 TRANSFAC - 685152 685167 7.0E-06 TAAGCCACTCGTAAAC 16 V_HEN1_01_M00068 TRANSFAC - 685795 685816 6.0E-06 ACTGGCCTCAGATGGTGCCTTG 22 V_SP100_04_M02913 TRANSFAC - 684482 684496 9.0E-06 CTCGTCGATCAAAAG 15 V_LDSPOLYA_B_M00317 TRANSFAC + 684458 684473 9.0E-06 CACGTGTTTAATCTTT 16 V_BARBIE_01_M00238 TRANSFAC - 684475 684489 0.0E+00 ATCAAAAGGTTGTTG 15 V_FOXA2_02_M02853 TRANSFAC + 684499 684513 5.0E-06 AATACTAACAAGGGA 15 V_FKLF_Q5_M01837 TRANSFAC - 684608 684617 2.0E-06 GGGGTGGGAG 10 V_RUNX1_01_M02257 TRANSFAC + 684517 684527 1.0E-06 CTCTGTGGTTT 11 V_MAZ_Q6_01_M02023 TRANSFAC - 685330 685343 2.0E-06 GGCGGAGGGAGGGG 14 V_ZF5_B_M00333 TRANSFAC - 685769 685781 2.0E-06 CAGGAGCGCGCTT 13 V_CREBATF_Q6_M00981 TRANSFAC + 685561 685569 9.0E-06 GTGACGTCA 9 V_CREBATF_Q6_M00981 TRANSFAC - 685562 685570 9.0E-06 GTGACGTCA 9 V_REX1_03_M01744 TRANSFAC + 685616 685627 2.0E-06 AACATGGCGGCG 12 V_PEBP_Q6_M00984 TRANSFAC - 684515 684529 3.0E-06 AGAAACCACAGAGCT 15 V_KLF7_03_M02773 TRANSFAC - 685130 685145 3.0E-06 TGAGCCCCGCCCTTGT 16 V_CREB_Q2_01_M00916 TRANSFAC + 685560 685573 7.0E-06 CGTGACGTCACTAG 14 V_MZF1_02_M00084 TRANSFAC - 685327 685339 8.0E-06 GAGGGAGGGGAAA 13 V_AP1_Q2_01_M00924 TRANSFAC - 687512 687523 8.0E-06 TGACTCACTGGG 12 V_EHF_03_M02052 TRANSFAC + 684493 684502 9.0E-06 CGAGGAAATA 10 V_CREM_Q6_M01820 TRANSFAC + 685562 685572 1.0E-06 TGACGTCACTA 11 V_VJUN_01_M00036 TRANSFAC - 685558 685573 2.0E-06 CTAGTGACGTCACGGC 16 V_ATF1_Q6_M00691 TRANSFAC + 685559 685569 8.0E-06 CCGTGACGTCA 11 V_CREBP1_Q2_M00179 TRANSFAC + 685560 685571 1.0E-06 CGTGACGTCACT 12 V_CREBP1_Q2_M00179 TRANSFAC - 685560 685571 4.0E-06 AGTGACGTCACG 12 V_AP4_01_M00005 TRANSFAC - 686414 686431 6.0E-06 TGGCACAGCTCCAGCCTT 18 V_ATF1_03_M02738 TRANSFAC + 685558 685573 6.0E-06 GCCGTGACGTCACTAG 16 V_ATF1_03_M02738 TRANSFAC - 685558 685573 1.0E-05 CTAGTGACGTCACGGC 16 V_ZFP161_04_M02933 TRANSFAC + 685272 685285 7.0E-06 ACCGCGCAGGGCCT 14 V_REST_02_M02256 TRANSFAC - 685244 685264 7.0E-06 TTCAGGAGCGTGGCGAGTTGC 21 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 684520 684527 1.0E-05 TGTGGTTT 8 V_ARID5A_04_M02840 TRANSFAC + 685459 685475 4.0E-06 CTTTGAATACGAAGTGC 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.