Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

WDR60 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55112 WD repeat domain 60 chr7 + 158644268 - 158649768 158649268 Transcription Factor Binding Sites   Download all TFBS in the WDR60 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints SOX21_HMG_DBD_dimeric_15_1 SELEX - 158645904 158645918 4.0E-06 TACAATTTTATTTTT 15 HOXC13_homeodomain_DBD_monomeric_11_1 SELEX - 158646209 158646219 2.0E-06 GCTCATAAAAA 11 IRF7_IRF_DBD_dimeric_14_1 SELEX - 158646189 158646202 2.0E-06 TCTAAAACGAAAGA 14 SRY_HMG_DBD_dimeric_15_1 SELEX + 158645904 158645918 4.0E-06 AAAAATAAAATTGTA 15 SRY_HMG_DBD_dimeric_15_1 SELEX - 158645904 158645918 9.0E-06 TACAATTTTATTTTT 15 SOX21_HMG_DBD_dimeric_13_2 SELEX + 158646304 158646316 3.0E-06 AGAATTTAATTCA 13 SOX21_HMG_DBD_dimeric_13_2 SELEX - 158651299 158651311 9.0E-06 AGAATTTCATTAA 13 POU3F3_POU_DBD_monomeric_12_1 SELEX - 158653865 158653876 1.0E-06 ATTCATAATTTA 12 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 158645901 158645912 9.0E-06 ACCAAAAATAAA 12 POU3F2_POU_DBD_monomeric_13_1 SELEX - 158653865 158653877 9.0E-06 GATTCATAATTTA 13 LHX2_homeodomain_DBD_dimeric_15_1 SELEX + 158653990 158654004 3.0E-06 TAACTACTGTAATTA 15 LHX2_homeodomain_DBD_dimeric_15_1 SELEX - 158653990 158654004 2.0E-06 TAATTACAGTAGTTA 15 POU3F4_POU_DBD_monomeric_11_1 SELEX - 158653865 158653875 5.0E-06 TTCATAATTTA 11 HOXD13_homeodomain_DBD_monomeric_11_1 SELEX - 158646209 158646219 1.0E-06 GCTCATAAAAA 11 EWSR1-FLI1_MA0149.1 JASPAR - 158651629 158651646 4.0E-06 GAGGGGAGGGGAGGAAAG 18 EWSR1-FLI1_MA0149.1 JASPAR - 158651664 158651681 1.0E-06 GGGGGGAGGGGAGGAAAG 18 SOX7_HMG_full_dimeric_17_2 SELEX + 158646302 158646318 9.0E-06 AAAGAATTTAATTCACG 17 Sox17_HMG_DBD_dimeric_15_1 SELEX + 158645904 158645918 4.0E-06 AAAAATAAAATTGTA 15 Sox17_HMG_DBD_dimeric_15_1 SELEX - 158645904 158645918 3.0E-06 TACAATTTTATTTTT 15 SOX15_HMG_full_dimeric_15_3 SELEX - 158646303 158646317 9.0E-06 GTGAATTAAATTCTT 15 ISX_homeodomain_DBD_dimeric_13_1 SELEX + 158653993 158654005 7.0E-06 CTACTGTAATTAT 13 Pax4_MA0068.1 JASPAR - 158646326 158646355 7.0E-06 AAAAAAAAACCTCTGGTCTCCCATACAGCC 30 Pax4_MA0068.1 JASPAR - 158646331 158646360 8.0E-06 AAAAAAAAAAAAAACCTCTGGTCTCCCATA 30 Pax4_MA0068.1 JASPAR - 158646332 158646361 4.0E-06 AAAAAAAAAAAAAAACCTCTGGTCTCCCAT 30 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 158653855 158653870 8.0E-06 TAAAAGGGCTTAAATT 16 POU4F3_POU_DBD_monomeric_16_1 SELEX - 158653861 158653876 5.0E-06 ATTCATAATTTAAGCC 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 158653855 158653870 6.0E-06 TAAAAGGGCTTAAATT 16 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX - 158646209 158646218 5.0E-06 CTCATAAAAA 10 SOX8_HMG_full_dimeric_13_1 SELEX - 158646305 158646317 1.0E-05 GTGAATTAAATTC 13 Sox17_HMG_DBD_dimeric_15_2 SELEX + 158646303 158646317 2.0E-06 AAGAATTTAATTCAC 15 Sox17_HMG_DBD_dimeric_15_2 SELEX - 158646303 158646317 2.0E-06 GTGAATTAAATTCTT 15 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX - 158646209 158646218 3.0E-06 CTCATAAAAA 10 SOX2_HMG_full_dimeric_15_1 SELEX + 158646303 158646317 5.0E-06 AAGAATTTAATTCAC 15 SOX2_HMG_full_dimeric_15_1 SELEX - 158646303 158646317 3.0E-06 GTGAATTAAATTCTT 15 FOXJ3_forkhead_DBD_dimeric_14_1 SELEX + 158645897 158645910 5.0E-06 GTAAACCAAAAATA 14 SP1_MA0079.2 JASPAR + 158651493 158651502 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR + 158651514 158651523 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR + 158651609 158651618 3.0E-06 CCCCTCCCCC 10 SP1_MA0079.2 JASPAR + 158651671 158651680 3.0E-06 CCCCTCCCCC 10 NFAT5_NFAT_DBD_dimeric_14_1 SELEX - 158654049 158654062 8.0E-06 GTGAAAAATTACAA 14 MEOX2_homeodomain_DBD_monomeric_10_1 SELEX + 158653997 158654006 7.0E-06 TGTAATTATC 10 SOX18_HMG_full_dimeric_15_1 SELEX + 158645904 158645918 9.0E-06 AAAAATAAAATTGTA 15 SOX15_HMG_full_dimeric_15_1 SELEX + 158645904 158645918 7.0E-06 AAAAATAAAATTGTA 15 SOX7_HMG_full_dimeric_17_1 SELEX - 158645903 158645919 3.0E-06 TTACAATTTTATTTTTG 17 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 158646209 158646218 5.0E-06 CTCATAAAAA 10 TBX20_TBX_full_dimeric_16_1 SELEX - 158651744 158651759 6.0E-06 AGCTGTGAGCGTGTCA 16 LHX9_homeodomain_DBD_dimeric_13_1 SELEX - 158653999 158654011 9.0E-06 TAGCTGATAATTA 13 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 158648962 158648976 9.0E-06 AGAAAGGGAGAGCAG 15 POU3F1_POU_DBD_monomeric_12_2 SELEX - 158653865 158653876 1.0E-06 ATTCATAATTTA 12 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX + 158653989 158654005 3.0E-06 CTAACTACTGTAATTAT 17 MEOX2_homeodomain_DBD_dimeric_17_1 SELEX - 158653989 158654005 0.0E+00 ATAATTACAGTAGTTAG 17 HOXB13_homeodomain_DBD_monomeric_11_1 SELEX - 158646209 158646219 2.0E-06 GCTCATAAAAA 11 TFAP4_bHLH_full_dimeric_10_1 SELEX - 158654129 158654138 9.0E-06 AACAGCTGAG 10 HOXA13_homeodomain_full_monomeric_11_1 SELEX - 158646209 158646219 4.0E-06 GCTCATAAAAA 11 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX - 158646209 158646218 8.0E-06 CTCATAAAAA 10 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX - 158646209 158646218 8.0E-06 CTCATAAAAA 10 Sox11_HMG_DBD_dimeric_15_1 SELEX - 158645904 158645918 7.0E-06 TACAATTTTATTTTT 15 VDR_nuclearreceptor_full_dimeric_16_1 SELEX + 158651107 158651122 4.0E-06 AGGGTCAAAGGGGTCA 16 Hoxd9_homeodomain_DBD_monomeric_9_2 SELEX - 158646210 158646218 1.0E-05 CTCATAAAA 9 HOXD12_homeodomain_DBD_monomeric_11_1 SELEX - 158646209 158646219 9.0E-06 GCTCATAAAAA 11 Sox3_HMG_DBD_dimeric_17_1 SELEX + 158645903 158645919 1.0E-06 CAAAAATAAAATTGTAA 17 Sox3_HMG_DBD_dimeric_17_1 SELEX - 158645903 158645919 3.0E-06 TTACAATTTTATTTTTG 17 NRF1_NRF_full_dimeric_12_1 SELEX - 158649140 158649151 1.0E-05 TGCGCCTGCGCT 12 NRF1_NRF_full_dimeric_12_1 SELEX + 158649235 158649246 5.0E-06 TGCGCAGGCGCA 12 NRF1_NRF_full_dimeric_12_1 SELEX - 158649235 158649246 5.0E-06 TGCGCCTGCGCA 12 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX - 158646209 158646219 5.0E-06 GCTCATAAAAA 11 Sox1_HMG_DBD_dimeric_15_2 SELEX + 158646303 158646317 5.0E-06 AAGAATTTAATTCAC 15 Sox1_HMG_DBD_dimeric_15_2 SELEX - 158646303 158646317 1.0E-06 GTGAATTAAATTCTT 15 POU4F1_POU_DBD_monomeric_14_1 SELEX - 158653863 158653876 2.0E-06 ATTCATAATTTAAG 14 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX - 158646209 158646218 9.0E-06 CTCATAAAAA 10 Zfx_MA0146.1 JASPAR + 158649404 158649417 7.0E-06 GCCGCCCGGGCCTG 14 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 158645897 158645910 8.0E-06 GTAAACCAAAAATA 14 V_DMRT4_01_M01149 TRANSFAC - 158651124 158651136 3.0E-06 AATGTAACAAAAG 13 V_HOXA9_01_M01351 TRANSFAC - 158646205 158646221 1.0E-05 CAGCTCATAAAAACTAA 17 V_TCF3_01_M01594 TRANSFAC + 158654046 158654058 1.0E-06 CCTTTGTAATTTT 13 V_TCFE2A_04_M02927 TRANSFAC - 158645924 158645940 8.0E-06 CCATTCAGATGGTTGGG 17 V_DMRT3_01_M01148 TRANSFAC + 158651124 158651138 1.0E-06 CTTTTGTTACATTCA 15 V_OBOX1_01_M01450 TRANSFAC + 158653855 158653871 3.0E-06 TAAAAGGGCTTAAATTA 17 V_ZFX_01_M01593 TRANSFAC - 158649405 158649420 1.0E-05 CCGCAGGCCCGGGCGG 16 V_HMGIY_Q3_M01010 TRANSFAC - 158646283 158646297 0.0E+00 ATTGCAATTTCCTAT 15 V_BCL6_01_M01183 TRANSFAC - 158645904 158645919 7.0E-06 TTACAATTTTATTTTT 16 V_HOXA13_02_M01297 TRANSFAC + 158645906 158645914 4.0E-06 AAATAAAAT 9 V_MEF2_02_M00231 TRANSFAC + 158645895 158645916 7.0E-06 ATGTAAACCAAAAATAAAATTG 22 V_ZFP740_03_M02834 TRANSFAC + 158651493 158651508 4.0E-06 CCCCTCCCCCCACTTT 16 V_AP4_Q6_M00176 TRANSFAC + 158654129 158654138 8.0E-06 CTCAGCTGTT 10 V_RFX4_03_M02789 TRANSFAC - 158649307 158649321 6.0E-06 GCGCCTAGCAACCGA 15 V_SP1_03_M02281 TRANSFAC + 158651493 158651502 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC + 158651514 158651523 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC + 158651609 158651618 3.0E-06 CCCCTCCCCC 10 V_SP1_03_M02281 TRANSFAC + 158651671 158651680 3.0E-06 CCCCTCCCCC 10 V_PITX2_Q6_M02114 TRANSFAC - 158648904 158648913 1.0E-06 TGTAATCCCA 10 V_HEN1_01_M00068 TRANSFAC + 158654123 158654144 0.0E+00 ATGGAGCTCAGCTGTTTCCCGT 22 V_HEN1_01_M00068 TRANSFAC - 158654123 158654144 3.0E-06 ACGGGAAACAGCTGAGCTCCAT 22 V_HOXA13_03_M01430 TRANSFAC - 158646207 158646222 2.0E-06 CCAGCTCATAAAAACT 16 V_HOXC13_01_M01317 TRANSFAC - 158646207 158646222 0.0E+00 CCAGCTCATAAAAACT 16 V_STAT4_Q4_M01666 TRANSFAC - 158651303 158651316 7.0E-06 TTAAGAGAATTTCA 14 V_PPARGRXRA_01_M02262 TRANSFAC - 158651552 158651566 8.0E-06 GCAGGGGAAAGGGGA 15 RXRA_VDR_MA0074.1 JASPAR + 158651108 158651122 5.0E-06 GGGTCAAAGGGGTCA 15 V_ZNF219_01_M01122 TRANSFAC + 158651517 158651528 1.0E-06 CTCCCCCCTCCC 12 V_ZNF219_01_M01122 TRANSFAC + 158651612 158651623 1.0E-06 CTCCCCCCTCCC 12 V_FOXA2_02_M02853 TRANSFAC - 158654045 158654059 1.0E-06 AAAAATTACAAAGGC 15 V_HOXB13_01_M01467 TRANSFAC - 158646206 158646221 6.0E-06 CAGCTCATAAAAACTA 16 V_STAF_01_M00262 TRANSFAC - 158649256 158649277 3.0E-06 ACTGCCCAGCGTGCCCTGCGGC 22 V_NFAT_Q6_M00302 TRANSFAC - 158651475 158651486 6.0E-06 CACTGGAAAAAG 12 V_POLY_C_M00212 TRANSFAC - 158646297 158646314 1.0E-06 AATTAAATTCTTTCTCTA 18 V_RSRFC4_Q2_M00407 TRANSFAC + 158645899 158645915 7.0E-06 AAACCAAAAATAAAATT 17 V_OLF1_01_M00261 TRANSFAC - 158649066 158649087 6.0E-06 TTGGTCTCCCCAAGGGGTAGGT 22 V_ARID3A_02_M02839 TRANSFAC + 158653931 158653945 6.0E-06 AAAGATATCAGAAAG 15 V_IRF3_Q3_M01279 TRANSFAC - 158649594 158649606 6.0E-06 TCCGTTTCCCTTC 13 V_MAZ_Q6_01_M02023 TRANSFAC - 158651510 158651523 2.0E-06 GGGGGAGGGGAGAG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 158651544 158651557 7.0E-06 AGGGGAGGGGAGAG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 158651593 158651606 7.0E-06 AGGGGAGGGGAGAG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 158651605 158651618 2.0E-06 GGGGGAGGGGAGAG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 158651627 158651640 3.0E-06 AGGGGAGGAAAGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC - 158651632 158651645 0.0E+00 AGGGGAGGGGAGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC - 158651637 158651650 0.0E+00 AGGGGAGGGGAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 158651647 158651660 2.0E-06 AGGGGAGGAAAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 158651652 158651665 0.0E+00 AGGGGAGGGGAGGA 14 V_MAZ_Q6_01_M02023 TRANSFAC - 158651662 158651675 2.0E-06 AGGGGAGGAAAGGG 14 V_MAZ_Q6_01_M02023 TRANSFAC - 158651667 158651680 0.0E+00 GGGGGAGGGGAGGA 14 V_NKX25_Q5_M01043 TRANSFAC + 158654057 158654066 7.0E-06 TTTCACTTGA 10 V_RFXDC2_03_M02790 TRANSFAC - 158649307 158649321 1.0E-06 GCGCCTAGCAACCGA 15 V_AP4_Q5_M00175 TRANSFAC + 158654129 158654138 3.0E-06 CTCAGCTGTT 10 V_SOX12_04_M02900 TRANSFAC + 158646294 158646309 0.0E+00 CAATAGAGAAAGAATT 16 V_POU6F1_01_M00465 TRANSFAC + 158653862 158653872 1.0E-06 GCTTAAATTAT 11 V_SOX11_03_M02795 TRANSFAC - 158651120 158651136 6.0E-06 AATGTAACAAAAGATGA 17 V_BLIMP1_Q6_M01066 TRANSFAC + 158649591 158649606 0.0E+00 CAGGAAGGGAAACGGA 16 V_GATA4_Q3_M00632 TRANSFAC + 158653933 158653944 3.0E-06 AGATATCAGAAA 12 V_OTX2_Q3_M01719 TRANSFAC + 158653857 158653869 9.0E-06 AAAGGGCTTAAAT 13 V_GABPBETA_Q3_M01876 TRANSFAC - 158651537 158651547 1.0E-05 AGAGGAAGGGA 11 V_TCFE2A_03_M02823 TRANSFAC + 158651822 158651838 4.0E-06 GACTACAGGTGCGAGCT 17 V_HEN1_02_M00058 TRANSFAC + 158654123 158654144 1.0E-06 ATGGAGCTCAGCTGTTTCCCGT 22 V_HEN1_02_M00058 TRANSFAC - 158654123 158654144 5.0E-06 ACGGGAAACAGCTGAGCTCCAT 22 V_NKX3A_02_M01383 TRANSFAC + 158653854 158653870 1.0E-05 TTAAAAGGGCTTAAATT 17 V_T3R_Q6_M00963 TRANSFAC - 158653943 158653951 7.0E-06 CCTGTCCTT 9 V_ZFP206_01_M01742 TRANSFAC - 158649141 158649151 8.0E-06 TGCGCCTGCGC 11 V_ZFP206_01_M01742 TRANSFAC + 158649235 158649245 1.0E-06 TGCGCAGGCGC 11 V_ZFP206_01_M01742 TRANSFAC - 158649236 158649246 8.0E-06 TGCGCCTGCGC 11 V_RBPJK_01_M01112 TRANSFAC + 158649001 158649011 1.0E-05 CCCGTGGGAAC 11 V_ASCL2_04_M02841 TRANSFAC + 158651544 158651559 2.0E-06 CTCTCCCCTCCCCTTT 16 V_ASCL2_04_M02841 TRANSFAC + 158651573 158651588 9.0E-06 CTTTCCCCTCCCTTCT 16 V_PITX2_Q2_M00482 TRANSFAC - 158648903 158648913 1.0E-06 TGTAATCCCAG 11 V_T3RBETA_Q6_01_M02119 TRANSFAC - 158651585 158651601 7.0E-06 AGGGGAGAGGAGGAGAA 17 V_ZFP281_01_M01597 TRANSFAC - 158651493 158651503 2.0E-06 GGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 158651514 158651524 2.0E-06 GGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 158651609 158651619 2.0E-06 GGGGGGAGGGG 11 V_ZFP281_01_M01597 TRANSFAC - 158651671 158651681 2.0E-06 GGGGGGAGGGG 11 V_BBX_03_M02739 TRANSFAC - 158651295 158651309 5.0E-06 AATTTCATTAAACAG 15 V_TBX22_01_M01195 TRANSFAC - 158651741 158651759 7.0E-06 AGCTGTGAGCGTGTCACTG 19 V_ZFP281_04_M02831 TRANSFAC + 158651491 158651505 2.0E-06 ATCCCCTCCCCCCAC 15 V_ZFP281_04_M02831 TRANSFAC + 158651492 158651506 8.0E-06 TCCCCTCCCCCCACT 15 V_ZFP281_04_M02831 TRANSFAC + 158651512 158651526 2.0E-06 CTCCCCTCCCCCCTC 15 V_ZFP281_04_M02831 TRANSFAC + 158651513 158651527 1.0E-06 TCCCCTCCCCCCTCC 15 V_ZFP281_04_M02831 TRANSFAC + 158651607 158651621 2.0E-06 CTCCCCTCCCCCCTC 15 V_ZFP281_04_M02831 TRANSFAC + 158651608 158651622 1.0E-06 TCCCCTCCCCCCTCC 15 V_ZFP281_04_M02831 TRANSFAC + 158651670 158651684 9.0E-06 TCCCCTCCCCCCCTT 15 V_DLX3_02_M02051 TRANSFAC - 158653998 158654005 5.0E-06 ATAATTAC 8 V_EWSR1FLI1_01_M02252 TRANSFAC - 158651629 158651646 4.0E-06 GAGGGGAGGGGAGGAAAG 18 V_EWSR1FLI1_01_M02252 TRANSFAC - 158651664 158651681 1.0E-06 GGGGGGAGGGGAGGAAAG 18 V_SIX6_01_M01345 TRANSFAC + 158653929 158653945 9.0E-06 GAAAAGATATCAGAAAG 17 V_VDR_Q3_M00444 TRANSFAC + 158651108 158651122 0.0E+00 GGGTCAAAGGGGTCA 15 V_PAX4_02_M00377 TRANSFAC - 158654050 158654060 2.0E-06 GAAAAATTACA 11 V_SOX15_04_M02903 TRANSFAC + 158651298 158651312 2.0E-06 TTTAATGAAATTCTC 15 V_UF1H3BETA_Q6_M01068 TRANSFAC - 158651492 158651505 6.0E-06 GTGGGGGGAGGGGA 14 V_MAFK_04_M02880 TRANSFAC + 158645907 158645921 3.0E-06 AATAAAATTGTAAGA 15 V_MAFK_04_M02880 TRANSFAC + 158646284 158646298 5.0E-06 TAGGAAATTGCAATA 15 V_EHF_07_M02849 TRANSFAC - 158646280 158646295 0.0E+00 TGCAATTTCCTATCTA 16 V_HOXD10_01_M01375 TRANSFAC - 158646205 158646221 9.0E-06 CAGCTCATAAAAACTAA 17 V_TAACC_B_M00331 TRANSFAC + 158645907 158645929 6.0E-06 AATAAAATTGTAAGACCCCCAAC 23 V_OBOX5_01_M01381 TRANSFAC + 158653856 158653872 7.0E-06 AAAAGGGCTTAAATTAT 17 V_SOX5_04_M02910 TRANSFAC - 158653862 158653876 1.0E-06 ATTCATAATTTAAGC 15 V_RNF96_01_M01199 TRANSFAC - 158649160 158649169 7.0E-06 GCCCGCGGCC 10 V_TCF3_05_M02920 TRANSFAC + 158645900 158645914 0.0E+00 AACCAAAAATAAAAT 15 V_OTX1_01_M01366 TRANSFAC + 158653856 158653872 8.0E-06 AAAAGGGCTTAAATTAT 17 V_OBOX6_06_M03067 TRANSFAC - 158653856 158653872 7.0E-06 ATAATTTAAGCCCTTTT 17 V_VDRRXR_01_M01202 TRANSFAC + 158651108 158651122 5.0E-06 GGGTCAAAGGGGTCA 15 PPARG_RXRA_MA0065.2 JASPAR - 158651552 158651566 8.0E-06 GCAGGGGAAAGGGGA 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.