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PTCD3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55037 pentatricopeptide repeat domain 3 chr2 + 86328304 - 86333804 86333304 Transcription Factor Binding Sites   Download all TFBS in the PTCD3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Uncx_homeodomain_DBD_monomeric_8_1 SELEX + 86332489 86332496 9.0E-06 CTAATTAA 8 LMX1A_homeodomain_DBD_monomeric_8_1 SELEX + 86332489 86332496 9.0E-06 CTAATTAA 8 ISX_homeodomain_full_monomeric_8_1 SELEX + 86332489 86332496 5.0E-06 CTAATTAA 8 DLX1_homeodomain_DBD_monomeric_10_1 SELEX + 86332488 86332497 8.0E-06 CCTAATTAAC 10 HOXA10_homeodomain_DBD_monomeric_12_1 SELEX - 86333239 86333250 3.0E-06 AATCATAAAATG 12 ALX3_homeodomain_full_monomeric_10_1 SELEX + 86332488 86332497 1.0E-05 CCTAATTAAC 10 EN2_homeodomain_full_monomeric_10_1 SELEX + 86332488 86332497 1.0E-05 CCTAATTAAC 10 NR4A2_nuclearreceptor_full_monomeric_11_1 SELEX + 86334415 86334425 5.0E-06 TTTTAAGGTCA 11 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 86332462 86332478 1.0E-06 ACAAACAAGAGGAAACT 17 FOXL1_forkhead_full_dimeric_13_1 SELEX + 86333112 86333124 3.0E-06 TGAAAACAATCAA 13 Shox2_homeodomain_DBD_monomeric_8_1 SELEX + 86332489 86332496 5.0E-06 CTAATTAA 8 ESX1_homeodomain_full_monomeric_10_1 SELEX + 86332488 86332497 5.0E-06 CCTAATTAAC 10 Alx1_homeodomain_DBD_monomeric_10_1 SELEX + 86332488 86332497 8.0E-06 CCTAATTAAC 10 NKX6-2_homeodomain_full_monomeric_8_1 SELEX + 86332489 86332496 5.0E-06 CTAATTAA 8 HOXD11_homeodomain_DBD_monomeric_10_1 SELEX - 86333240 86333249 5.0E-06 ATCATAAAAT 10 HOXC11_homeodomain_full_monomeric_11_1 SELEX - 86333240 86333250 7.0E-06 AATCATAAAAT 11 PRRX2_homeodomain_full_monomeric_8_1 SELEX + 86332489 86332496 5.0E-06 CTAATTAA 8 LMX1B_homeodomain_full_monomeric_8_1 SELEX + 86332489 86332496 9.0E-06 CTAATTAA 8 NR2F1_MA0017.1 JASPAR - 86334412 86334425 1.0E-05 TGACCTTAAAACAG 14 GBX2_homeodomain_full_monomeric_10_1 SELEX + 86332488 86332497 1.0E-05 CCTAATTAAC 10 LEF1_HMG_DBD_monomeric_15_1 SELEX + 86333134 86333148 6.0E-06 AGACATCAAAATAAT 15 Hoxc10_homeodomain_DBD_monomeric_10_1 SELEX - 86333240 86333249 3.0E-06 ATCATAAAAT 10 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX - 86333241 86333250 4.0E-06 AATCATAAAA 10 Hoxa2_homeodomain_DBD_monomeric_10_1 SELEX + 86332488 86332497 8.0E-06 CCTAATTAAC 10 ZNF740_C2H2_full_monomeric_10_1 SELEX - 86333063 86333072 7.0E-06 CCCCCCCCAT 10 SHOX_homeodomain_DBD_monomeric_8_1 SELEX + 86332489 86332496 9.0E-06 CTAATTAA 8 HOXC11_homeodomain_full_monomeric_11_2 SELEX - 86333240 86333250 1.0E-05 AATCATAAAAT 11 EMX1_homeodomain_DBD_monomeric_10_1 SELEX + 86332488 86332497 8.0E-06 CCTAATTAAC 10 PRRX1_homeodomain_full_monomeric_8_1 SELEX + 86332489 86332496 5.0E-06 CTAATTAA 8 SRY_MA0084.1 JASPAR + 86333113 86333121 9.0E-06 GAAAACAAT 9 DLX6_homeodomain_DBD_monomeric_8_1 SELEX + 86332489 86332496 5.0E-06 CTAATTAA 8 HOXC11_homeodomain_DBD_monomeric_11_1 SELEX - 86333240 86333250 2.0E-06 AATCATAAAAT 11 NOTO_homeodomain_DBD_monomeric_10_1 SELEX + 86332488 86332497 2.0E-06 CCTAATTAAC 10 Vsx1_homeodomain_DBD_monomeric_8_1 SELEX + 86332489 86332496 5.0E-06 CTAATTAA 8 DLX3_homeodomain_DBD_monomeric_8_1 SELEX + 86332489 86332496 9.0E-06 CTAATTAA 8 YY2_C2H2_full_monomeric_11_1 SELEX - 86333368 86333378 1.0E-06 ACCGCCATCTT 11 EN1_homeodomain_DBD_monomeric_10_1 SELEX + 86332488 86332497 5.0E-06 CCTAATTAAC 10 PBX1_MA0070.1 JASPAR + 86333114 86333125 4.0E-06 AAAACAATCAAA 12 LHX2_homeodomain_DBD_monomeric_10_1 SELEX + 86332488 86332497 3.0E-06 CCTAATTAAC 10 LHX9_homeodomain_DBD_monomeric_8_1 SELEX + 86332489 86332496 5.0E-06 CTAATTAA 8 Tp53_p53l_DBD_dimeric_17_1 SELEX + 86332702 86332718 8.0E-06 ACAAGCGCCAGACAAGC 17 MEOX1_homeodomain_full_monomeric_10_1 SELEX + 86332488 86332497 4.0E-06 CCTAATTAAC 10 TEAD1_TEA_full_dimeric_17_1 SELEX + 86332518 86332534 5.0E-06 TAATTCCACAAATGCTT 17 HOXC10_homeodomain_DBD_monomeric_10_3 SELEX - 86333240 86333249 2.0E-06 ATCATAAAAT 10 Sox11_HMG_DBD_dimeric_15_1 SELEX - 86333556 86333570 5.0E-06 AACCATTTCATCGTG 15 Hoxd9_homeodomain_DBD_monomeric_9_2 SELEX - 86333241 86333249 8.0E-06 ATCATAAAA 9 GSX1_homeodomain_DBD_monomeric_10_1 SELEX + 86332488 86332497 3.0E-06 CCTAATTAAC 10 HOXD12_homeodomain_DBD_monomeric_11_1 SELEX - 86333240 86333250 7.0E-06 AATCATAAAAT 11 RAXL1_homeodomain_DBD_monomeric_8_1 SELEX + 86332489 86332496 5.0E-06 CTAATTAA 8 Hoxa11_homeodomain_DBD_monomeric_11_1 SELEX - 86333240 86333250 7.0E-06 AATCATAAAAT 11 Sox2_MA0143.1 JASPAR + 86333103 86333117 1.0E-06 CTTTTGTTTTGAAAA 15 HOXC12_homeodomain_DBD_monomeric_11_1 SELEX - 86333240 86333250 9.0E-06 AATCATAAAAT 11 Lhx4_homeodomain_DBD_monomeric_8_1 SELEX + 86332489 86332496 9.0E-06 CTAATTAA 8 FOXJ2_forkhead_DBD_dimeric_14_1 SELEX + 86333113 86333126 5.0E-06 GAAAACAATCAAAG 14 V_NFAT_Q4_01_M00935 TRANSFAC + 86333153 86333162 7.0E-06 TAGGAAAATT 10 V_HOXA9_01_M01351 TRANSFAC - 86333236 86333252 1.0E-05 GCAATCATAAAATGGGA 17 V_FOXP1_01_M00987 TRANSFAC - 86333115 86333134 1.0E-06 TTATATATCTTTGATTGTTT 20 V_TCF3_01_M01594 TRANSFAC + 86333103 86333115 4.0E-06 CTTTTGTTTTGAA 13 V_MAFK_03_M02776 TRANSFAC - 86334331 86334345 1.0E-05 GAAAAATGCTAACGA 15 V_ALX4_01_M00619 TRANSFAC + 86333137 86333149 8.0E-06 CATCAAAATAATC 13 V_AHRARNT_01_M00235 TRANSFAC + 86333587 86333602 4.0E-06 TAACGGTCGCGTGCCC 16 V_HNF1_02_M01379 TRANSFAC - 86332533 86332549 1.0E-06 TCCTCGTTAACTAACAA 17 V_ZEC_01_M01081 TRANSFAC - 86333230 86333242 6.0E-06 AATGGGAGGTTGC 13 V_RORA1_01_M00156 TRANSFAC + 86334414 86334426 3.0E-06 GTTTTAAGGTCAT 13 V_BCL6_01_M01183 TRANSFAC - 86333114 86333129 3.0E-06 TATCTTTGATTGTTTT 16 V_BCL6_01_M01183 TRANSFAC - 86333123 86333138 3.0E-06 TGTCTTATATATCTTT 16 V_BCL6_01_M01183 TRANSFAC + 86333240 86333255 8.0E-06 ATTTTATGATTGCTTT 16 V_EBOX_Q6_01_M01034 TRANSFAC + 86332948 86332957 6.0E-06 CCACCTGACT 10 V_SRY_02_M00160 TRANSFAC - 86333102 86333113 2.0E-06 CAAAACAAAAGA 12 V_YY1_Q6_M00793 TRANSFAC - 86333367 86333375 7.0E-06 GCCATCTTT 9 V_P53_DECAMER_Q2_M00761 TRANSFAC + 86332711 86332720 7.0E-06 AGACAAGCCT 10 V_HFH4_01_M00742 TRANSFAC - 86333114 86333126 5.0E-06 CTTTGATTGTTTT 13 V_PAX3_B_M00327 TRANSFAC - 86333193 86333213 4.0E-06 AGACTTCGTCACGGAAGCTAA 21 V_CDX_Q5_M00991 TRANSFAC + 86333116 86333133 0.0E+00 AACAATCAAAGATATATA 18 V_ELF4_04_M02850 TRANSFAC - 86333100 86333116 8.0E-06 TTTCAAAACAAAAGAGC 17 V_HELIOSA_02_M01004 TRANSFAC + 86333151 86333161 1.0E-06 TTTAGGAAAAT 11 V_TCF3_04_M02816 TRANSFAC + 86333133 86333149 7.0E-06 AAGACATCAAAATAATC 17 V_COUP_01_M00158 TRANSFAC - 86334412 86334425 1.0E-05 TGACCTTAAAACAG 14 V_STAF_01_M00262 TRANSFAC + 86333339 86333360 3.0E-06 CTTTCCCAACATGCTCTGCAGA 22 V_NFAT_Q6_M00302 TRANSFAC + 86333151 86333162 4.0E-06 TTTAGGAAAATT 12 V_MAZ_Q6_01_M02023 TRANSFAC - 86332581 86332594 5.0E-06 AAGGGTGGGGAGGG 14 V_ZF5_B_M00333 TRANSFAC - 86333576 86333588 6.0E-06 TAAGGGCGCGCAT 13 V_STAT5A_02_M00460 TRANSFAC + 86332676 86332699 1.0E-06 TTCCCAGAACTACGGCTCCCAGCA 24 V_SOX18_03_M02801 TRANSFAC - 86333110 86333125 4.0E-06 TTTGATTGTTTTCAAA 16 V_NKX52_01_M01315 TRANSFAC - 86333240 86333256 4.0E-06 GAAAGCAATCATAAAAT 17 V_PBX1_01_M00096 TRANSFAC + 86333116 86333124 7.0E-06 AACAATCAA 9 V_REX1_03_M01744 TRANSFAC + 86333368 86333379 9.0E-06 AAGATGGCGGTT 12 V_TCF7_03_M02817 TRANSFAC + 86333133 86333149 5.0E-06 AAGACATCAAAATAATC 17 V_STAF_02_M00264 TRANSFAC + 86333339 86333359 0.0E+00 CTTTCCCAACATGCTCTGCAG 21 V_STAT3_03_M01595 TRANSFAC + 86332750 86332765 9.0E-06 GCTTCTGGGAATCGTA 16 V_FOXO1_Q5_M01216 TRANSFAC - 86333105 86333113 8.0E-06 CAAAACAAA 9 V_HOXD9_Q2_M01834 TRANSFAC - 86333241 86333250 2.0E-06 AATCATAAAA 10 V_GATA4_Q3_M00632 TRANSFAC + 86333127 86333138 7.0E-06 ATATATAAGACA 12 V_ELF1_Q6_M00746 TRANSFAC + 86332466 86332477 1.0E-05 ACAAGAGGAAAC 12 V_SHOX2_01_M01415 TRANSFAC + 86332485 86332501 9.0E-06 GTGCCTAATTAACCATG 17 V_ZIC2_05_M02940 TRANSFAC + 86332690 86332704 5.0E-06 GCTCCCAGCAGGACA 15 V_BARHL1_01_M01332 TRANSFAC + 86333143 86333158 4.0E-06 AATAATCATTTAGGAA 16 V_FOXL1_02_M02857 TRANSFAC - 86333102 86333117 0.0E+00 TTTTCAAAACAAAAGA 16 V_FOXL1_02_M02857 TRANSFAC + 86333136 86333151 9.0E-06 ACATCAAAATAATCAT 16 V_FOXJ3_06_M02855 TRANSFAC - 86333102 86333118 3.0E-06 GTTTTCAAAACAAAAGA 17 V_TCF1_06_M02815 TRANSFAC - 86332533 86332549 1.0E-06 TCCTCGTTAACTAACAA 17 V_FOXO3_01_M00477 TRANSFAC - 86333110 86333123 6.0E-06 TGATTGTTTTCAAA 14 V_TCF4_Q5_M00671 TRANSFAC + 86333628 86333635 1.0E-05 CCTTTGAA 8 V_PLZF_02_M01075 TRANSFAC - 86333115 86333143 6.0E-06 TTTGATGTCTTATATATCTTTGATTGTTT 29 V_SOX2_01_M02246 TRANSFAC + 86333103 86333117 1.0E-06 CTTTTGTTTTGAAAA 15 V_SOX2_Q6_M01272 TRANSFAC + 86333099 86333114 6.0E-06 CGCTCTTTTGTTTTGA 16 V_BARHL2_01_M01446 TRANSFAC + 86333143 86333158 5.0E-06 AATAATCATTTAGGAA 16 V_SOX12_03_M02796 TRANSFAC - 86333110 86333123 7.0E-06 TGATTGTTTTCAAA 14 V_PIT1_Q6_M00802 TRANSFAC + 86332957 86332974 2.0E-06 TATTCTTAATTCAACCTC 18 V_MEF2_01_M00006 TRANSFAC + 86334391 86334406 0.0E+00 TTCTCAAAATAACTGT 16 V_HMEF2_Q6_M00406 TRANSFAC + 86334391 86334406 7.0E-06 TTCTCAAAATAACTGT 16 V_CMAF_01_M01070 TRANSFAC - 86333128 86333146 6.0E-06 TATTTTGATGTCTTATATA 19 V_SMAD1_01_M01590 TRANSFAC - 86333102 86333113 0.0E+00 CAAAACAAAAGA 12 V_PPARA_01_M00242 TRANSFAC - 86333515 86333534 7.0E-06 GAAACATAGGACTAAGGTGA 20 V_ZIC1_05_M02939 TRANSFAC + 86332690 86332704 5.0E-06 GCTCCCAGCAGGACA 15 V_NANOG_02_M01247 TRANSFAC - 86333098 86333117 0.0E+00 TTTTCAAAACAAAAGAGCGA 20 V_NANOG_02_M01247 TRANSFAC + 86333109 86333128 6.0E-06 TTTTGAAAACAATCAAAGAT 20 V_OCT4_01_M01125 TRANSFAC + 86333104 86333118 7.0E-06 TTTTGTTTTGAAAAC 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.