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CCDC40 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55036 coiled-coil domain containing 40 chr17 + 78005430 - 78010930 78010430 Transcription Factor Binding Sites   Download all TFBS in the CCDC40 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR - 78009937 78009955 8.0E-06 CTCCCTGCAGAGGGCGGCA 19 HINFP1_C2H2_full_dimeric_19_1 SELEX - 78009905 78009923 1.0E-06 GCGCACGCGGAGCGTCCGA 19 HINFP1_C2H2_full_dimeric_19_1 SELEX + 78011014 78011032 9.0E-06 GCGGCCCGCGATAGTCCGC 19 HINFP1_C2H2_full_dimeric_19_1 SELEX - 78011014 78011032 1.0E-05 GCGGACTATCGCGGGCCGC 19 RFX4_RFX_DBD_dimeric_16_1 SELEX + 78010791 78010806 0.0E+00 AGTCACCATGGCAACC 16 RFX4_RFX_DBD_dimeric_16_1 SELEX - 78010791 78010806 0.0E+00 GGTTGCCATGGTGACT 16 YY1_C2H2_full_monomeric_11_1 SELEX - 78010459 78010469 1.0E-05 TCCGCCATTTC 11 Pax4_MA0068.1 JASPAR + 78008363 78008392 9.0E-06 AAAAAAATATGCGCACAATAACCACGCTCA 30 ZNF524_C2H2_full_dimeric_12_1 SELEX + 78009547 78009558 5.0E-06 CCCCTCGGACCC 12 RFX2_RFX_DBD_dimeric_15_1 SELEX - 78010443 78010457 0.0E+00 CGTTGCTAGGCGACG 15 Rfx3_RFX_DBD_dimeric_16_1 SELEX + 78010791 78010806 0.0E+00 AGTCACCATGGCAACC 16 Rfx3_RFX_DBD_dimeric_16_1 SELEX - 78010791 78010806 0.0E+00 GGTTGCCATGGTGACT 16 SP1_MA0079.2 JASPAR + 78009556 78009565 7.0E-06 CCCCGCCCCC 10 RFX3_RFX_DBD_dimeric_15_1 SELEX - 78010443 78010457 0.0E+00 CGTTGCTAGGCGACG 15 BCL6B_C2H2_DBD_monomeric_17_1 SELEX + 78010228 78010244 6.0E-06 CGCTTTACAGAAATTGA 17 NFATC1_NFAT_full_dimeric_15_1 SELEX + 78008907 78008921 1.0E-05 TTCCGAGTGTGGGAA 15 SP1_C2H2_DBD_monomeric_11_1 SELEX + 78009555 78009565 4.0E-06 ACCCCGCCCCC 11 YY2_C2H2_full_monomeric_11_1 SELEX - 78010459 78010469 4.0E-06 TCCGCCATTTC 11 MZF1_5-13_MA0057.1 JASPAR - 78010736 78010745 1.0E-05 GTAGGGGAAA 10 RFX2_RFX_DBD_dimeric_16_1 SELEX + 78010791 78010806 0.0E+00 AGTCACCATGGCAACC 16 RFX2_RFX_DBD_dimeric_16_1 SELEX - 78010791 78010806 0.0E+00 GGTTGCCATGGTGACT 16 RFX4_RFX_DBD_dimeric_15_1 SELEX - 78010443 78010457 0.0E+00 CGTTGCTAGGCGACG 15 RFX5_RFX_DBD_dimeric_16_3 SELEX + 78010791 78010806 0.0E+00 AGTCACCATGGCAACC 16 RFX5_RFX_DBD_dimeric_16_3 SELEX - 78010791 78010806 1.0E-06 GGTTGCCATGGTGACT 16 TFAP2C_TFAP_full_dimeric_12_1 SELEX + 78010058 78010069 9.0E-06 CCCCCTAGGGCA 12 GLI2_C2H2_DBD_monomeric_12_1 SELEX - 78009188 78009199 1.0E-05 GCGCCCACACAG 12 TFAP2A_MA0003.1 JASPAR - 78010060 78010068 8.0E-06 GCCCTAGGG 9 CPEB1_RRM_full_monomeric_8_1 SELEX - 78008678 78008685 4.0E-06 AATAAAAA 8 RARA_nuclearreceptor_full_dimeric_15_1 SELEX - 78010707 78010721 4.0E-06 GAGGACAAAGGGACA 15 Zfx_MA0146.1 JASPAR - 78009828 78009841 3.0E-06 CGCGGCGAGGCCTG 14 V_AP2ALPHA_01_M00469 TRANSFAC - 78010060 78010068 8.0E-06 GCCCTAGGG 9 V_CEBPG_Q6_M00622 TRANSFAC + 78008855 78008867 5.0E-06 CCTATTTCTGAAT 13 V_AP2ALPHA_Q6_M01857 TRANSFAC + 78009730 78009740 6.0E-06 CGCCCCCGGCC 11 V_KLF15_Q2_M01714 TRANSFAC - 78009501 78009514 9.0E-06 GAGCTGGGGCGGGG 14 V_FREAC7_01_M00293 TRANSFAC + 78008341 78008356 1.0E-05 TCACCATAAACATGCC 16 V_ZSCAN4_03_M02838 TRANSFAC - 78008367 78008383 7.0E-06 TTATTGTGCGCATATTT 17 V_TCF3_01_M01594 TRANSFAC - 78008714 78008726 7.0E-06 GCTTTCTTTTCTA 13 V_TCF3_01_M01594 TRANSFAC + 78008828 78008840 7.0E-06 CTTTTGTTATGTC 13 V_NFY_Q6_M00185 TRANSFAC + 78008754 78008764 7.0E-06 TGGCCAATCAG 11 V_EVI1_04_M00081 TRANSFAC - 78008842 78008856 1.0E-06 GGAAATGAATAGAAA 15 V_GM397_03_M02760 TRANSFAC - 78008367 78008383 7.0E-06 TTATTGTGCGCATATTT 17 V_ZFP740_04_M02938 TRANSFAC + 78009996 78010012 1.0E-05 GAAGACCCCCCGGGCGT 17 V_MAFB_03_M02879 TRANSFAC + 78008356 78008370 2.0E-06 CACTTACAAAAAAAT 15 V_SP1_Q6_01_M00931 TRANSFAC - 78009555 78009564 7.0E-06 GGGGCGGGGT 10 V_SRY_02_M00160 TRANSFAC - 78008827 78008838 1.0E-05 CATAACAAAAGT 12 V_GLI1_Q2_M01042 TRANSFAC + 78009122 78009131 6.0E-06 GACCACCAAG 10 V_RFX4_03_M02789 TRANSFAC + 78010445 78010459 4.0E-06 TCGCCTAGCAACGGG 15 V_RFX4_03_M02789 TRANSFAC + 78010794 78010808 3.0E-06 CACCATGGCAACCAC 15 V_SP1_03_M02281 TRANSFAC + 78009556 78009565 7.0E-06 CCCCGCCCCC 10 V_HFH4_01_M00742 TRANSFAC - 78008798 78008810 2.0E-06 TAAAGTTTGTTTT 13 V_SP1_02_M01303 TRANSFAC - 78009554 78009564 8.0E-06 GGGGCGGGGTC 11 V_SP1_02_M01303 TRANSFAC + 78009682 78009692 8.0E-06 GGGGCGGGGAC 11 V_CEBPB_01_M00109 TRANSFAC + 78008969 78008982 1.0E-06 ATGTTTAGCAATCT 14 V_TAL1_GATA1_01_M02243 TRANSFAC + 78008677 78008694 5.0E-06 CTTTTTATTCCAGATAAA 18 V_PAX5_02_M00144 TRANSFAC + 78009061 78009088 3.0E-06 AACAAGGGAGCCCAGGCGGAACGGAAGT 28 V_NFY_C_M00209 TRANSFAC - 78008752 78008765 2.0E-06 GCTGATTGGCCAGC 14 V_ELF4_04_M02850 TRANSFAC + 78008358 78008374 0.0E+00 CTTACAAAAAAATATGC 17 V_ZNF219_01_M01122 TRANSFAC + 78010672 78010683 4.0E-06 CACCCCCCCGCC 12 V_HELIOSA_02_M01004 TRANSFAC + 78010280 78010290 6.0E-06 TAAAGGAAAAG 11 V_FOXA2_02_M02853 TRANSFAC - 78008827 78008841 2.0E-06 AGACATAACAAAAGT 15 V_SOX7_04_M02911 TRANSFAC - 78008366 78008387 2.0E-06 GTGGTTATTGTGCGCATATTTT 22 V_HIC1_03_M01073 TRANSFAC - 78009197 78009214 3.0E-06 GTGGGGTGCCGGCGCGCG 18 V_RFX1_01_M00280 TRANSFAC + 78010442 78010458 9.0E-06 GCGTCGCCTAGCAACGG 17 V_KROX_Q6_M00982 TRANSFAC + 78009557 78009570 4.0E-06 CCCGCCCCCGCGGC 14 V_KROX_Q6_M00982 TRANSFAC + 78009728 78009741 5.0E-06 CCCGCCCCCGGCCC 14 V_AMEF2_Q6_M00403 TRANSFAC - 78008963 78008980 9.0E-06 ATTGCTAAACATAACCTA 18 V_SP1_Q6_M00196 TRANSFAC - 78009554 78009566 3.0E-06 CGGGGGCGGGGTC 13 V_HNF3A_01_M01261 TRANSFAC + 78008395 78008404 9.0E-06 ATGCAAACAA 10 V_EGR1_Q6_M01873 TRANSFAC - 78009558 78009567 4.0E-06 GCGGGGGCGG 10 V_IRF_Q6_M00772 TRANSFAC - 78008715 78008729 3.0E-06 TCTGCTTTCTTTTCT 15 V_MEF2_03_M00232 TRANSFAC - 78008962 78008983 5.0E-06 AAGATTGCTAAACATAACCTAG 22 V_RFXDC2_03_M02790 TRANSFAC + 78010445 78010459 0.0E+00 TCGCCTAGCAACGGG 15 V_YY1_Q6_02_M01035 TRANSFAC + 78010628 78010638 2.0E-06 CTCGCCATTTT 11 Tal1_Gata1_MA0140.1 JASPAR + 78008677 78008694 5.0E-06 CTTTTTATTCCAGATAAA 18 V_HFH1_01_M00129 TRANSFAC - 78008799 78008810 8.0E-06 TAAAGTTTGTTT 12 V_SP1_01_M00008 TRANSFAC - 78009555 78009564 3.0E-06 GGGGCGGGGT 10 V_CTCF_02_M01259 TRANSFAC - 78009939 78009958 4.0E-06 AATCTCCCTGCAGAGGGCGG 20 V_CTCF_01_M01200 TRANSFAC - 78009937 78009956 4.0E-06 TCTCCCTGCAGAGGGCGGCA 20 V_MZF1_02_M00084 TRANSFAC - 78010736 78010748 6.0E-06 GGAGTAGGGGAAA 13 V_ICSBP_Q6_M00699 TRANSFAC + 78008716 78008727 7.0E-06 GAAAAGAAAGCA 12 V_TFIII_Q6_M00706 TRANSFAC - 78010728 78010736 6.0E-06 AGAGGGAGG 9 V_SP4_Q5_M01273 TRANSFAC + 78009447 78009457 7.0E-06 GCCCCTCCCCG 11 V_FREAC2_01_M00290 TRANSFAC + 78008341 78008356 5.0E-06 TCACCATAAACATGCC 16 V_GCNF_01_M00526 TRANSFAC - 78008777 78008794 1.0E-06 GTCTGGGTCAAGTTCAAA 18 V_NFYC_Q5_M02107 TRANSFAC + 78008754 78008767 3.0E-06 TGGCCAATCAGCCC 14 V_TAL1_01_M01591 TRANSFAC - 78008713 78008725 9.0E-06 CTTTCTTTTCTAC 13 V_CEBPA_01_M00116 TRANSFAC - 78008969 78008982 2.0E-06 AGATTGCTAAACAT 14 V_STRA13_01_M00985 TRANSFAC + 78008645 78008658 1.0E-06 GCCTCACGTGAGCA 14 V_OSR2_04_M02889 TRANSFAC + 78008350 78008365 9.0E-06 ACATGCCACTTACAAA 16 V_CNOT3_01_M01253 TRANSFAC + 78010374 78010383 4.0E-06 GGCCGCGCCG 10 V_CACBINDINGPROTEIN_Q6_M00720 TRANSFAC - 78008624 78008632 8.0E-06 GAGGGTGGG 9 V_FOXL1_02_M02857 TRANSFAC + 78008793 78008808 5.0E-06 ACAGTAAAACAAACTT 16 V_FOXL1_02_M02857 TRANSFAC - 78008827 78008842 2.0E-06 AAGACATAACAAAAGT 16 V_FOXL1_02_M02857 TRANSFAC - 78008965 78008980 7.0E-06 ATTGCTAAACATAACC 16 V_FOXJ3_06_M02855 TRANSFAC - 78008827 78008843 2.0E-06 AAAGACATAACAAAAGT 17 V_SMAD3_03_M02794 TRANSFAC + 78008784 78008800 4.0E-06 TTGACCCAGACAGTAAA 17 V_PLZF_02_M01075 TRANSFAC - 78008794 78008822 4.0E-06 CTCGCCTTATGGTAAAGTTTGTTTTACTG 29 V_SRF_06_M02916 TRANSFAC + 78008358 78008374 3.0E-06 CTTACAAAAAAATATGC 17 V_EFC_Q6_M00626 TRANSFAC - 78010444 78010457 3.0E-06 CGTTGCTAGGCGAC 14 V_SOX1_03_M02802 TRANSFAC + 78008842 78008857 7.0E-06 TTTCTATTCATTTCCT 16 V_SOX2_Q6_M01272 TRANSFAC + 78008824 78008839 4.0E-06 CTAACTTTTGTTATGT 16 V_RFX3_04_M02788 TRANSFAC + 78010441 78010463 1.0E-06 AGCGTCGCCTAGCAACGGGAAAT 23 V_MEF2_01_M00006 TRANSFAC - 78008963 78008978 3.0E-06 TGCTAAACATAACCTA 16 V_SP1_Q2_01_M00933 TRANSFAC + 78009556 78009565 4.0E-06 CCCCGCCCCC 10 V_HMEF2_Q6_M00406 TRANSFAC - 78008963 78008978 1.0E-06 TGCTAAACATAACCTA 16 V_SP1_Q4_01_M00932 TRANSFAC - 78009554 78009566 5.0E-06 CGGGGGCGGGGTC 13 V_MIF1_01_M00279 TRANSFAC - 78010441 78010458 4.0E-06 CCGTTGCTAGGCGACGCT 18 V_SMAD1_01_M01590 TRANSFAC - 78008827 78008838 8.0E-06 CATAACAAAAGT 12 V_RFX1_02_M00281 TRANSFAC + 78010790 78010807 0.0E+00 CAGTCACCATGGCAACCA 18 V_ETV3_02_M02068 TRANSFAC + 78009080 78009089 9.0E-06 AACGGAAGTG 10 V_CEBPA_Q6_M01866 TRANSFAC + 78008969 78008981 9.0E-06 ATGTTTAGCAATC 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.