Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RMND1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 55005 required for meiotic nuclear division 1 homolog (S. cerevisiae) chr6 - 151772816 - 151778316 151773316 Transcription Factor Binding Sites   Download all TFBS in the RMND1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX - 151773984 151773999 5.0E-06 GTGAATAAATAAAAAG 16 Tp53_p53l_DBD_dimeric_18_1 SELEX - 151777150 151777167 6.0E-06 ACATGTGCTGTGTCAACT 18 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 151772966 151772982 5.0E-06 CAATTAATGAACCCTTT 17 POU3F3_POU_DBD_monomeric_12_1 SELEX - 151773550 151773561 5.0E-06 TTGAATAAAGAA 12 POU3F3_POU_DBD_monomeric_12_1 SELEX - 151773988 151773999 4.0E-06 GTGAATAAATAA 12 Arx_homeodomain_DBD_dimeric_13_1 SELEX - 151777132 151777144 6.0E-06 TTAAATGGATTAA 13 FOXC2_forkhead_DBD_monomeric_12_1 SELEX - 151773987 151773998 4.0E-06 TGAATAAATAAA 12 POU3F2_POU_DBD_monomeric_13_1 SELEX - 151773550 151773562 2.0E-06 TTTGAATAAAGAA 13 POU3F2_POU_DBD_monomeric_13_1 SELEX - 151773988 151774000 4.0E-06 AGTGAATAAATAA 13 FOXL1_forkhead_full_dimeric_13_1 SELEX - 151773984 151773996 3.0E-06 AATAAATAAAAAG 13 FOXL1_forkhead_full_dimeric_13_1 SELEX - 151773988 151774000 9.0E-06 AGTGAATAAATAA 13 POU3F4_POU_DBD_monomeric_11_1 SELEX - 151773988 151773998 1.0E-06 TGAATAAATAA 11 TBX1_TBX_DBD_dimeric_23_1 SELEX + 151777151 151777173 4.0E-06 GTTGACACAGCACATGTTTCAGA 23 FOXC1_forkhead_DBD_monomeric_11_1 SELEX - 151773988 151773998 8.0E-06 TGAATAAATAA 11 EWSR1-FLI1_MA0149.1 JASPAR + 151773160 151773177 1.0E-06 GGAAGAGAAGAAGGAAGC 18 Alx1_homeodomain_DBD_dimeric_13_1 SELEX + 151777132 151777144 8.0E-06 TTAATCCATTTAA 13 POU4F3_POU_DBD_monomeric_16_1 SELEX - 151773984 151773999 3.0E-06 GTGAATAAATAAAAAG 16 RFX2_RFX_DBD_dimeric_15_1 SELEX + 151776988 151777002 8.0E-06 CTTTCCTAGGCAGAG 15 Foxc1_forkhead_DBD_dimeric_11_1 SELEX - 151773985 151773995 2.0E-06 ATAAATAAAAA 11 ALX3_homeodomain_full_dimeric_13_1 SELEX + 151777132 151777144 9.0E-06 TTAATCCATTTAA 13 FOXB1_forkhead_DBD_putative-multimer_14_1 SELEX + 151778134 151778147 8.0E-06 AATTGACACAGATA 14 DRGX_homeodomain_DBD_dimeric_13_1 SELEX + 151777132 151777144 9.0E-06 TTAATCCATTTAA 13 FOXC2_forkhead_DBD_dimeric_11_1 SELEX - 151773985 151773995 1.0E-06 ATAAATAAAAA 11 PRDM4_C2H2_full_monomeric_13_1 SELEX - 151774017 151774029 7.0E-06 TTTTAACGCCCCC 13 POU3F1_POU_DBD_monomeric_12_2 SELEX - 151773550 151773561 5.0E-06 TTGAATAAAGAA 12 POU3F1_POU_DBD_monomeric_12_2 SELEX - 151773988 151773999 4.0E-06 GTGAATAAATAA 12 FEV_MA0156.1 JASPAR + 151774449 151774456 1.0E-05 CAGGAAAT 8 MAX_MA0058.1 JASPAR + 151773353 151773362 4.0E-06 GACCACGTGA 10 TFAP2A_MA0003.1 JASPAR - 151774394 151774402 8.0E-06 GCCCTAGGG 9 CPEB1_RRM_full_monomeric_8_1 SELEX - 151773985 151773992 4.0E-06 AATAAAAA 8 REST_MA0138.2 JASPAR + 151773942 151773962 9.0E-06 ATCAGGACAGGGGTCAGCTTC 21 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 151773985 151773997 0.0E+00 GAATAAATAAAAA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 151773989 151774001 3.0E-06 AAGTGAATAAATA 13 RARA_nuclearreceptor_full_dimeric_15_1 SELEX + 151773025 151773039 8.0E-06 AGAGGCAAAGGGTCA 15 POU4F1_POU_DBD_monomeric_14_1 SELEX - 151773986 151773999 6.0E-06 GTGAATAAATAAAA 14 RUNX3_RUNX_DBD_dimeric_18_1 SELEX - 151773861 151773878 7.0E-06 AGTCCGCGAAACCCGCAA 18 V_AP2ALPHA_01_M00469 TRANSFAC - 151774394 151774402 8.0E-06 GCCCTAGGG 9 V_HNF3B_01_M00131 TRANSFAC + 151773984 151773998 7.0E-06 CTTTTTATTTATTCA 15 V_TST1_02_M01316 TRANSFAC - 151772969 151772985 6.0E-06 ACTCAATTAATGAACCC 17 V_TST1_02_M01316 TRANSFAC + 151772970 151772986 8.0E-06 GGTTCATTAATTGAGTG 17 V_DBX1_01_M01483 TRANSFAC - 151773981 151773997 6.0E-06 GAATAAATAAAAAGTGA 17 V_DBX1_01_M01483 TRANSFAC - 151773985 151774001 2.0E-06 AAGTGAATAAATAAAAA 17 V_FREAC7_01_M00293 TRANSFAC - 151773985 151774000 4.0E-06 AGTGAATAAATAAAAA 16 V_USF_Q6_M00187 TRANSFAC - 151773338 151773347 2.0E-06 GTCACGTGGC 10 V_CDX2_Q5_01_M01659 TRANSFAC - 151773988 151773998 1.0E-05 TGAATAAATAA 11 V_APOLYA_B_M00310 TRANSFAC - 151773559 151773573 6.0E-06 AAAAAAGTGCTTTTG 15 V_AR_02_M00953 TRANSFAC - 151778115 151778141 1.0E-06 TGTCAATTTACATCTTGTTCTGTGCTC 27 V_E2F4_Q6_M02090 TRANSFAC + 151773323 151773332 1.0E-05 GCGGGAGAAA 10 V_ZFP410_04_M02936 TRANSFAC + 151773734 151773750 3.0E-06 TTTCTCCTCCCCACTTT 17 V_FOXA2_04_M02749 TRANSFAC - 151773984 151774000 7.0E-06 AGTGAATAAATAAAAAG 17 V_FOXD3_01_M00130 TRANSFAC + 151773986 151773997 6.0E-06 TTTTATTTATTC 12 V_NKX29_01_M01352 TRANSFAC - 151772977 151772993 2.0E-06 TAAAAAGCACTCAATTA 17 V_NKX29_01_M01352 TRANSFAC + 151773558 151773574 6.0E-06 TCAAAAGCACTTTTTTT 17 V_HOXA13_02_M01297 TRANSFAC - 151773985 151773993 4.0E-06 AAATAAAAA 9 V_SATB1_Q3_M01723 TRANSFAC - 151773546 151773561 1.0E-05 TTGAATAAAGAAACTT 16 V_EBOX_Q6_01_M01034 TRANSFAC + 151773339 151773348 4.0E-06 CCACGTGACT 10 V_HOXA4_01_M01370 TRANSFAC + 151772971 151772987 7.0E-06 GTTCATTAATTGAGTGC 17 V_POU1F1_Q6_M00744 TRANSFAC - 151773990 151773999 8.0E-06 GTGAATAAAT 10 V_FOXO3A_Q1_M01137 TRANSFAC - 151773985 151773996 3.0E-06 AATAAATAAAAA 12 V_HNF3_Q6_01_M01012 TRANSFAC + 151773980 151773997 8.0E-06 GTCACTTTTTATTTATTC 18 V_HNF3_Q6_01_M01012 TRANSFAC + 151773984 151774001 0.0E+00 CTTTTTATTTATTCACTT 18 V_FOXJ1_03_M02750 TRANSFAC - 151773983 151773998 3.0E-06 TGAATAAATAAAAAGT 16 V_AFP1_Q6_M00616 TRANSFAC - 151774117 151774127 7.0E-06 AAAAACTAGAC 11 V_LHX3A_01_M00510 TRANSFAC - 151772972 151772981 8.0E-06 AATTAATGAA 10 V_K2B_01_M01348 TRANSFAC + 151772972 151772988 5.0E-06 TTCATTAATTGAGTGCT 17 V_TCFAP2E_04_M02926 TRANSFAC - 151773569 151773582 8.0E-06 GGCTTTAAAAAAAA 14 V_TCFAP2C_04_M02925 TRANSFAC + 151774391 151774404 4.0E-06 GCGCCCTAGGGCTT 14 V_AR_03_M00956 TRANSFAC - 151778115 151778141 5.0E-06 TGTCAATTTACATCTTGTTCTGTGCTC 27 V_ELF4_04_M02850 TRANSFAC - 151773564 151773580 0.0E+00 CTTTAAAAAAAAAGTGC 17 V_ELF4_04_M02850 TRANSFAC - 151773565 151773581 7.0E-06 GCTTTAAAAAAAAAGTG 17 V_DBX2_01_M01360 TRANSFAC - 151772969 151772984 9.0E-06 CTCAATTAATGAACCC 16 V_DBX2_01_M01360 TRANSFAC + 151772971 151772986 3.0E-06 GTTCATTAATTGAGTG 16 V_ZFP105_03_M02827 TRANSFAC - 151773565 151773579 1.0E-06 TTTAAAAAAAAAGTG 15 V_ZFP105_03_M02827 TRANSFAC - 151773982 151773996 0.0E+00 AATAAATAAAAAGTG 15 V_FKLF_Q5_M01837 TRANSFAC - 151773275 151773284 5.0E-06 GGGGTGGGCG 10 V_ARX_01_M01423 TRANSFAC + 151772971 151772987 6.0E-06 GTTCATTAATTGAGTGC 17 V_HNF1_Q6_M00790 TRANSFAC + 151773985 151774002 8.0E-06 TTTTTATTTATTCACTTT 18 V_E2F1_01_M01250 TRANSFAC - 151774063 151774070 1.0E-05 CGTTTCTT 8 V_XFD3_01_M00269 TRANSFAC - 151773985 151773998 7.0E-06 TGAATAAATAAAAA 14 V_PXRRXR_02_M01153 TRANSFAC - 151773304 151773311 1.0E-05 AGAGTTCA 8 V_HOXA3_07_M02869 TRANSFAC - 151777130 151777143 9.0E-06 TAAATGGATTAAGG 14 V_HNF3_Q6_M00791 TRANSFAC - 151773983 151773995 2.0E-06 ATAAATAAAAAGT 13 V_LXR_DR4_Q3_M00766 TRANSFAC + 151773044 151773059 5.0E-06 CGCACTGGCGTAACCC 16 V_NKX22_02_M01372 TRANSFAC - 151772168 151772184 5.0E-06 CTGGGTACTTGAGATTA 17 V_NKX22_02_M01372 TRANSFAC + 151777042 151777058 5.0E-06 CTGGGTACTTGAGATTA 17 V_PAX5_01_M00143 TRANSFAC + 151774350 151774377 1.0E-05 TTTCAGGTCATGCAAGTATAGAGAGTAT 28 V_NKX52_01_M01315 TRANSFAC - 151772971 151772987 7.0E-06 GCACTCAATTAATGAAC 17 V_NKX52_01_M01315 TRANSFAC - 151772975 151772991 2.0E-06 AAAAGCACTCAATTAAT 17 V_GR_01_M00955 TRANSFAC - 151778115 151778141 6.0E-06 TGTCAATTTACATCTTGTTCTGTGCTC 27 V_PIT1_01_M01465 TRANSFAC - 151772969 151772985 1.0E-05 ACTCAATTAATGAACCC 17 V_HMX1_02_M01481 TRANSFAC - 151772971 151772987 6.0E-06 GCACTCAATTAATGAAC 17 V_MEF2_04_M00233 TRANSFAC - 151773566 151773587 6.0E-06 GGTGTGGCTTTAAAAAAAAAGT 22 V_XFD2_01_M00268 TRANSFAC - 151773985 151773998 4.0E-06 TGAATAAATAAAAA 14 V_TCF1_07_M02919 TRANSFAC - 151777131 151777144 2.0E-06 TTAAATGGATTAAG 14 V_PMX2B_01_M01356 TRANSFAC - 151772972 151772988 9.0E-06 AGCACTCAATTAATGAA 17 V_LHX3b_01_M01971 TRANSFAC - 151772972 151772981 5.0E-06 AATTAATGAA 10 V_SOX11_03_M02795 TRANSFAC - 151772107 151772123 9.0E-06 TGTTTAACAAAGCACAT 17 V_SOX11_03_M02795 TRANSFAC + 151777103 151777119 9.0E-06 TGTTTAACAAAGCACAT 17 V_ARX_02_M02945 TRANSFAC + 151772971 151772987 6.0E-06 GTTCATTAATTGAGTGC 17 V_ISGF4G_04_M02875 TRANSFAC + 151774467 151774480 0.0E+00 GGAAAACAGTAATA 14 V_MAF_Q6_01_M00983 TRANSFAC - 151777152 151777162 9.0E-06 TGCTGTGTCAA 11 V_USF_Q6_01_M00796 TRANSFAC + 151773337 151773348 3.0E-06 GGCCACGTGACT 12 V_USF_Q6_01_M00796 TRANSFAC + 151773353 151773364 1.0E-06 GACCACGTGAGC 12 V_HFH8_01_M00294 TRANSFAC + 151773986 151773998 9.0E-06 TTTTATTTATTCA 13 V_HOXA7_02_M01336 TRANSFAC - 151772971 151772987 8.0E-06 GCACTCAATTAATGAAC 17 V_S8_01_M00099 TRANSFAC - 151772973 151772988 9.0E-06 AGCACTCAATTAATGA 16 V_MTF1_06_M02882 TRANSFAC - 151773567 151773580 1.0E-05 CTTTAAAAAAAAAG 14 V_T3R_01_M00239 TRANSFAC + 151774349 151774364 6.0E-06 GTTTCAGGTCATGCAA 16 V_TAL1_01_M01591 TRANSFAC - 151773161 151773173 1.0E-05 CCTTCTTCTCTTC 13 V_BRN4_01_M01473 TRANSFAC - 151772969 151772985 4.0E-06 ACTCAATTAATGAACCC 17 V_DR1_Q3_M00762 TRANSFAC + 151773945 151773957 8.0E-06 AGGACAGGGGTCA 13 V_FOXL1_04_M02753 TRANSFAC - 151773984 151774000 1.0E-05 AGTGAATAAATAAAAAG 17 V_NKX3A_02_M01383 TRANSFAC - 151772977 151772993 2.0E-06 TAAAAAGCACTCAATTA 17 V_MAX_04_M02881 TRANSFAC + 151773336 151773349 5.0E-06 GGGCCACGTGACTG 14 V_E2F6_01_M01252 TRANSFAC - 151774063 151774070 1.0E-05 CGTTTCTT 8 V_NKX61_02_M01469 TRANSFAC - 151772969 151772984 8.0E-06 CTCAATTAATGAACCC 16 V_SMAD3_03_M02794 TRANSFAC - 151774111 151774127 6.0E-06 AAAAACTAGACAGTTCT 17 V_REST_02_M02256 TRANSFAC + 151773942 151773962 9.0E-06 ATCAGGACAGGGGTCAGCTTC 21 V_PLZF_02_M01075 TRANSFAC - 151774469 151774497 8.0E-06 TTACTTTAATTGGAAAGTATTACTGTTTT 29 V_SMAD_Q6_01_M00974 TRANSFAC - 151773347 151773357 7.0E-06 TGGTCAGACAG 11 V_SRF_06_M02916 TRANSFAC - 151773564 151773580 0.0E+00 CTTTAAAAAAAAAGTGC 17 V_SRF_06_M02916 TRANSFAC - 151773565 151773581 1.0E-06 GCTTTAAAAAAAAAGTG 17 V_SRF_06_M02916 TRANSFAC - 151773981 151773997 9.0E-06 GAATAAATAAAAAGTGA 17 V_EWSR1FLI1_01_M02252 TRANSFAC + 151773160 151773177 1.0E-06 GGAAGAGAAGAAGGAAGC 18 V_FOXJ2_01_M00422 TRANSFAC - 151773984 151774001 4.0E-06 AAGTGAATAAATAAAAAG 18 V_PR_02_M00957 TRANSFAC - 151778115 151778141 5.0E-06 TGTCAATTTACATCTTGTTCTGTGCTC 27 V_HNF3B_Q6_M02014 TRANSFAC + 151773988 151773996 1.0E-05 TTATTTATT 9 V_LHX9_01_M01367 TRANSFAC + 151772972 151772988 7.0E-06 TTCATTAATTGAGTGCT 17 V_LHX5_01_M01353 TRANSFAC + 151772972 151772988 1.0E-05 TTCATTAATTGAGTGCT 17 V_BRN3C_01_M01408 TRANSFAC - 151772969 151772984 1.0E-05 CTCAATTAATGAACCC 16 V_HMX3_02_M01413 TRANSFAC - 151772971 151772987 3.0E-06 GCACTCAATTAATGAAC 17 V_HMX3_02_M01413 TRANSFAC - 151772975 151772991 4.0E-06 AAAAGCACTCAATTAAT 17 V_IPF1_04_M01236 TRANSFAC + 151772974 151772983 6.0E-06 CATTAATTGA 10 V_TCF11MAFG_01_M00284 TRANSFAC + 151777147 151777168 3.0E-06 CCGAGTTGACACAGCACATGTT 22 V_FEV_01_M02269 TRANSFAC + 151774449 151774456 1.0E-05 CAGGAAAT 8 V_COUP_DR1_Q6_M00765 TRANSFAC - 151773945 151773957 8.0E-06 TGACCCCTGTCCT 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.