Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

OXSM Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 54995 3-oxoacyl-ACP synthase, mitochondrial chr3 + 25826562 - 25832062 25831562 Transcription Factor Binding Sites   Download all TFBS in the OXSM promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX + 25831454 25831473 0.0E+00 CTGACCTCAGCCAAGGTGAC 20 THRB_nuclearreceptor_DBD_dimeric_20_1 SELEX - 25831454 25831473 0.0E+00 GTCACCTTGGCTGAGGTCAG 20 SOX21_HMG_DBD_dimeric_13_2 SELEX - 25830408 25830420 5.0E-06 AGAATGTGAGTCA 13 SOX9_HMG_full_dimeric_16_1 SELEX - 25832050 25832065 7.0E-06 ATCAATCTTCAGTACT 16 SRY_HMG_DBD_dimeric_13_2 SELEX + 25830408 25830420 8.0E-06 TGACTCACATTCT 13 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX + 25831480 25831488 3.0E-06 TAAAGTCAA 9 SOX7_HMG_full_dimeric_17_2 SELEX - 25830406 25830422 7.0E-06 GAAGAATGTGAGTCAAG 17 SOX9_HMG_DBD_monomeric_9_1 SELEX + 25830460 25830468 9.0E-06 AAACAATGG 9 SOX15_HMG_full_dimeric_15_3 SELEX + 25830407 25830421 6.0E-06 TTGACTCACATTCTT 15 Pax4_MA0068.1 JASPAR + 25826633 25826662 5.0E-06 AAAAAAAAAAAAAAAAAAGTCACACCTACT 30 Pax4_MA0068.1 JASPAR + 25826634 25826663 9.0E-06 AAAAAAAAAAAAAAAAAGTCACACCTACTT 30 Pax4_MA0068.1 JASPAR + 25826635 25826664 0.0E+00 AAAAAAAAAAAAAAAAGTCACACCTACTTT 30 Pax4_MA0068.1 JASPAR + 25826636 25826665 3.0E-06 AAAAAAAAAAAAAAAGTCACACCTACTTTT 30 Pax4_MA0068.1 JASPAR + 25826637 25826666 4.0E-06 AAAAAAAAAAAAAAGTCACACCTACTTTTA 30 Pax4_MA0068.1 JASPAR + 25826643 25826672 7.0E-06 AAAAAAAAGTCACACCTACTTTTAACCACA 30 TBX1_TBX_DBD_dimeric_19_1 SELEX + 25831335 25831353 9.0E-06 ATGGGTGAAAATGCTACCT 19 Sox17_HMG_DBD_dimeric_15_2 SELEX + 25830407 25830421 9.0E-06 TTGACTCACATTCTT 15 SOX2_HMG_full_dimeric_15_1 SELEX + 25830407 25830421 4.0E-06 TTGACTCACATTCTT 15 NFATC1_NFAT_full_dimeric_20_1 SELEX + 25831921 25831940 5.0E-06 AGTGGAAAGACTTGTCCCCT 20 SOX9_HMG_full_dimeric_16_3 SELEX - 25832050 25832065 8.0E-06 ATCAATCTTCAGTACT 16 SOX14_HMG_DBD_dimeric_15_1 SELEX + 25830407 25830421 7.0E-06 TTGACTCACATTCTT 15 MAFK_bZIP_DBD_dimeric_21_1 SELEX + 25831342 25831362 9.0E-06 AAAATGCTACCTCATCGCGTT 21 MTF1_C2H2_DBD_monomeric_14_1 SELEX + 25827458 25827471 4.0E-06 TTTGCACACAGCAG 14 MAFG_bZIP_full_dimeric_21_1 SELEX - 25831342 25831362 1.0E-05 AACGCGATGAGGTAGCATTTT 21 SOX18_HMG_full_dimeric_15_3 SELEX - 25830407 25830421 9.0E-06 AAGAATGTGAGTCAA 15 TEAD1_TEA_full_dimeric_17_1 SELEX + 25827533 25827549 4.0E-06 AAATTCCTGAAAGACTT 17 Sox3_HMG_DBD_dimeric_17_3 SELEX - 25830406 25830422 5.0E-06 GAAGAATGTGAGTCAAG 17 FOXC1_MA0032.1 JASPAR - 25832076 25832083 7.0E-06 AGTAAGTA 8 SOX9_MA0077.1 JASPAR + 25830460 25830468 2.0E-06 AAACAATGG 9 TP53_MA0106.1 JASPAR + 25832087 25832106 2.0E-06 AAGAATATGCCCTGAAATGT 20 NRF1_NRF_full_dimeric_12_1 SELEX + 25831572 25831583 7.0E-06 TGCGCGTGCGCT 12 ELF5_MA0136.1 JASPAR + 25831228 25831236 5.0E-06 AATTTCCTT 9 Sox1_HMG_DBD_dimeric_15_2 SELEX + 25830407 25830421 3.0E-06 TTGACTCACATTCTT 15 TEAD1_MA0090.1 JASPAR + 25830413 25830424 5.0E-06 CACATTCTTCTG 12 V_FOXP1_01_M00987 TRANSFAC - 25830485 25830504 6.0E-06 ATATTTATGGTTTTTTCTGG 20 V_CEBPG_Q6_M00622 TRANSFAC + 25832078 25832090 8.0E-06 CTTACTTAAAAGA 13 V_TST1_02_M01316 TRANSFAC - 25831228 25831244 9.0E-06 AAAGAATTAAGGAAATT 17 V_FREAC7_01_M00293 TRANSFAC + 25830492 25830507 1.0E-06 AAACCATAAATATGAC 16 V_CDX2_Q5_01_M01659 TRANSFAC - 25827571 25827581 4.0E-06 TCCATAAAAAC 11 V_AHR_Q5_M00778 TRANSFAC - 25831418 25831428 4.0E-06 TTTGCGTGAGC 11 V_SOX14_05_M02902 TRANSFAC + 25827508 25827522 1.0E-06 GTCACACAATAGTGA 15 V_STAT3STAT3_Q3_M01220 TRANSFAC - 25830478 25830491 1.0E-05 TTTCTGGGCAATGC 14 V_ACAAT_B_M00309 TRANSFAC - 25831889 25831897 8.0E-06 CATTGGTGG 9 V_HMGIY_Q3_M01010 TRANSFAC - 25831316 25831330 1.0E-06 AAGGCATTTTTCTTT 15 V_MTF1_Q4_M00650 TRANSFAC + 25827458 25827471 2.0E-06 TTTGCACACAGCAG 14 V_IRF_Q6_01_M00972 TRANSFAC - 25831741 25831751 9.0E-06 GAAAAAGAAAT 11 V_IRF2_Q6_M01882 TRANSFAC - 25831738 25831753 8.0E-06 GAGAAAAAGAAATCAG 16 V_TCFAP2E_04_M02926 TRANSFAC + 25832080 25832093 2.0E-06 TACTTAAAAGAATA 14 V_HNF1_C_M00206 TRANSFAC + 25827486 25827502 8.0E-06 TGTTGGTTAATCACTCA 17 V_HMGA2_01_M01300 TRANSFAC - 25831294 25831308 2.0E-06 ATAATGCCCAAATAT 15 V_BACH1_01_M00495 TRANSFAC - 25830404 25830418 7.0E-06 AATGTGAGTCAAGCT 15 V_COMP1_01_M00057 TRANSFAC + 25830457 25830480 8.0E-06 TGGAAACAATGGCTTCAAGAGGCA 24 V_GC_01_M00255 TRANSFAC - 25827550 25827563 4.0E-06 AAGGGGAGGAGTTG 14 V_HELIOSA_02_M01004 TRANSFAC - 25832040 25832050 7.0E-06 TTAAGGATAAC 11 V_TBX18_01_M01262 TRANSFAC + 25831335 25831353 3.0E-06 ATGGGTGAAAATGCTACCT 19 V_GATA3_05_M02859 TRANSFAC + 25832138 25832159 5.0E-06 TTTAGAAGAAGTTATCAGTAAT 22 V_HNF1_Q6_M00790 TRANSFAC + 25827489 25827506 1.0E-05 TGGTTAATCACTCAATGT 18 V_POLY_C_M00212 TRANSFAC + 25827422 25827439 1.0E-05 GATTAAAAGTCTCTTGTG 18 V_HOXA3_07_M02869 TRANSFAC - 25827563 25827576 0.0E+00 AAAAACCATTAGCA 14 V_HOXA3_07_M02869 TRANSFAC + 25830490 25830503 5.0E-06 AAAAACCATAAATA 14 V_HOXB9_01_M01426 TRANSFAC + 25830491 25830506 8.0E-06 AAAACCATAAATATGA 16 V_TATA_C_M00216 TRANSFAC - 25827572 25827581 7.0E-06 TCCATAAAAA 10 V_SFPI1_04_M02896 TRANSFAC - 25831229 25831242 5.0E-06 AGAATTAAGGAAAT 14 V_ELF5_01_M01197 TRANSFAC - 25831228 25831238 1.0E-06 TTAAGGAAATT 11 V_SOX12_04_M02900 TRANSFAC - 25831741 25831756 7.0E-06 CGAGAGAAAAAGAAAT 16 V_TEF_01_M01305 TRANSFAC + 25830413 25830424 5.0E-06 CACATTCTTCTG 12 V_NKX3A_01_M00451 TRANSFAC - 25832077 25832088 8.0E-06 TTTTAAGTAAGT 12 V_HB24_01_M01399 TRANSFAC + 25827414 25827428 1.0E-06 CCCTATTTGATTAAA 15 V_ARID3A_04_M02735 TRANSFAC + 25827416 25827432 1.0E-06 CTATTTGATTAAAAGTC 17 V_NKX32_02_M01482 TRANSFAC - 25832043 25832059 5.0E-06 CTTCAGTACTTAAGGAT 17 V_NEUROD_02_M01288 TRANSFAC - 25827463 25827474 6.0E-06 TACCTGCTGTGT 12 V_HIF1_Q3_M00797 TRANSFAC + 25831559 25831572 2.0E-06 GCGTACGTGCGTGT 14 V_ZBTB4_04_M02929 TRANSFAC + 25831305 25831320 9.0E-06 TTATCACTGCCAAAGA 16 V_AIRE_01_M00999 TRANSFAC - 25826662 25826687 1.0E-06 TCATTTCTGGGCTCATGTGGTTAAAA 26 V_AIRE_01_M00999 TRANSFAC + 25827561 25827586 1.0E-06 CTTGCTAATGGTTTTTATGGAGGTTA 26 V_AIRE_01_M00999 TRANSFAC + 25830449 25830474 3.0E-06 ACTCTACTTGGAAACAATGGCTTCAA 26 V_ZFP206_01_M01742 TRANSFAC + 25831572 25831582 7.0E-06 TGCGCGTGCGC 11 V_RBPJK_01_M01112 TRANSFAC + 25831518 25831528 3.0E-06 TGCGTGGGAAA 11 V_FPM315_01_M01587 TRANSFAC - 25831652 25831663 4.0E-06 GAAGGAGGAGGG 12 V_P53_01_M00034 TRANSFAC + 25832089 25832108 1.0E-05 GAATATGCCCTGAAATGTGT 20 V_PLZF_02_M01075 TRANSFAC - 25831667 25831695 1.0E-06 TTGATTTGAATGTAAAGGAGGAAAGGAGG 29 V_ZFP281_01_M01597 TRANSFAC - 25831937 25831947 5.0E-06 TGGGGGAAGGG 11 V_R_01_M00273 TRANSFAC + 25831774 25831794 6.0E-06 GTGTACATGTGTGGTGGTGCC 21 V_OSR1_04_M02888 TRANSFAC + 25831343 25831358 5.0E-06 AAATGCTACCTCATCG 16 V_IRF1_Q6_01_M01881 TRANSFAC + 25831739 25831752 4.0E-06 TGATTTCTTTTTCT 14 V_ZFP281_04_M02831 TRANSFAC + 25831935 25831949 1.0E-06 TCCCCTTCCCCCATC 15 V_EFC_Q6_M00626 TRANSFAC + 25827522 25827535 2.0E-06 AATCACTATACAAA 14 V_SOX1_03_M02802 TRANSFAC - 25831894 25831909 7.0E-06 CTCCAATTGAATCATT 16 V_HIF1_Q5_M00466 TRANSFAC + 25831560 25831571 4.0E-06 CGTACGTGCGTG 12 V_ELF5_04_M02241 TRANSFAC + 25831228 25831236 5.0E-06 AATTTCCTT 9 V_SOX5_07_M02909 TRANSFAC - 25831242 25831258 8.0E-06 ACTGGAATTGTAAGAAA 17 V_TAACC_B_M00331 TRANSFAC - 25831729 25831751 3.0E-06 GAAAAAGAAATCAGGCCCCAGGT 23 V_PBX1_04_M01357 TRANSFAC - 25831326 25831342 1.0E-06 TCACCCATCAAAAAGGC 17 V_PAX4_04_M00380 TRANSFAC + 25826633 25826662 5.0E-06 AAAAAAAAAAAAAAAAAAGTCACACCTACT 30 V_PAX4_04_M00380 TRANSFAC + 25826634 25826663 5.0E-06 AAAAAAAAAAAAAAAAAGTCACACCTACTT 30 V_PAX4_04_M00380 TRANSFAC + 25826635 25826664 1.0E-06 AAAAAAAAAAAAAAAAGTCACACCTACTTT 30 V_T3RALPHA_Q6_M01724 TRANSFAC - 25831454 25831464 3.0E-06 GCTGAGGTCAG 11 V_OTX3_01_M01403 TRANSFAC - 25832151 25832167 6.0E-06 TTGTCAGGATTACTGAT 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.