Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C1orf123 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 54987 chromosome 1 open reading frame 123 chr1 - 53685789 - 53691289 53686289 Transcription Factor Binding Sites   Download all TFBS in the C1orf123 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 53685837 53685854 3.0E-06 TGGTTAAATATTTTCTCA 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 53685837 53685854 5.0E-06 TGAGAAAATATTTAACCA 18 FLI1_ETS_full_monomeric_10_1 SELEX + 53685944 53685953 7.0E-06 ACCGGAAGTC 10 ETV5_ETS_DBD_monomeric_10_1 SELEX + 53685944 53685953 7.0E-06 ACCGGAAGTC 10 ERG_ETS_full_monomeric_10_1 SELEX + 53685944 53685953 5.0E-06 ACCGGAAGTC 10 ETV3_ETS_DBD_monomeric_10_1 SELEX + 53685944 53685953 3.0E-06 ACCGGAAGTC 10 RARA_nuclearreceptor_full_dimeric_18_1 SELEX + 53686425 53686442 5.0E-06 TGGGGCCAGTGGAGGTCA 18 FOXG1_forkhead_DBD_dimeric_17_1 SELEX + 53686677 53686693 9.0E-06 CCAAATAAAGATAAACC 17 FEV_ETS_DBD_monomeric_10_1 SELEX + 53685944 53685953 6.0E-06 ACCGGAAGTC 10 ZNF232_C2H2_full_monomeric_19_1 SELEX + 53686674 53686692 7.0E-06 CTGCCAAATAAAGATAAAC 19 ETV1_ETS_DBD_monomeric_10_1 SELEX + 53685944 53685953 7.0E-06 ACCGGAAGTC 10 Rarb_nuclearreceptor_DBD_dimeric_18_1 SELEX + 53686425 53686442 8.0E-06 TGGGGCCAGTGGAGGTCA 18 HOXD11_homeodomain_DBD_monomeric_10_1 SELEX + 53686302 53686311 8.0E-06 GTCGTAAAAG 10 XBP1_bZIP_DBD_dimeric_12_1 SELEX + 53686618 53686629 5.0E-06 GATCACGTCAGC 12 XBP1_bZIP_DBD_dimeric_12_1 SELEX - 53686618 53686629 4.0E-06 GCTGACGTGATC 12 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 53685839 53685852 6.0E-06 AGAAAATATTTAAC 14 REL_MA0101.1 JASPAR - 53685811 53685820 9.0E-06 GGGGTTTTCC 10 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 53685839 53685852 7.0E-06 AGAAAATATTTAAC 14 RARG_nuclearreceptor_DBD_dimeric_17_2 SELEX + 53686426 53686442 4.0E-06 GGGGCCAGTGGAGGTCA 17 ETS1_ETS_full_monomeric_10_1 SELEX + 53685944 53685953 9.0E-06 ACCGGAAGTC 10 ELK4_ETS_DBD_monomeric_10_1 SELEX + 53685944 53685953 5.0E-06 ACCGGAAGTC 10 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 53685839 53685852 9.0E-06 GTTAAATATTTTCT 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 53685839 53685852 9.0E-06 AGAAAATATTTAAC 14 ELK4_MA0076.1 JASPAR + 53685944 53685952 4.0E-06 ACCGGAAGT 9 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX + 53686426 53686442 7.0E-06 GGGGCCAGTGGAGGTCA 17 ERF_ETS_DBD_monomeric_10_1 SELEX + 53685944 53685953 5.0E-06 ACCGGAAGTC 10 ELK1_ETS_full_monomeric_10_1 SELEX + 53685944 53685953 4.0E-06 ACCGGAAGTC 10 Hoxd9_homeodomain_DBD_monomeric_9_2 SELEX + 53686302 53686310 2.0E-06 GTCGTAAAA 9 Elk3_ETS_DBD_monomeric_10_1 SELEX + 53685944 53685953 4.0E-06 ACCGGAAGTC 10 HNF1A_MA0046.1 JASPAR + 53685838 53685851 3.0E-06 GGTTAAATATTTTC 14 V_FOXP1_01_M00987 TRANSFAC - 53686671 53686690 8.0E-06 TTATCTTTATTTGGCAGTCT 20 V_ERG_03_M02062 TRANSFAC + 53685944 53685953 5.0E-06 ACCGGAAGTC 10 V_ERM_01_M01992 TRANSFAC + 53685944 53685953 7.0E-06 ACCGGAAGTC 10 V_HNF3B_01_M00131 TRANSFAC + 53685840 53685854 1.0E-06 TTAAATATTTTCTCA 15 V_SAP1A_01_M01167 TRANSFAC + 53685943 53685953 2.0E-06 CACCGGAAGTC 11 V_APOLYA_B_M00310 TRANSFAC + 53686517 53686531 8.0E-06 ACTGAACGCCAATTT 15 V_HSF1_Q6_M01023 TRANSFAC + 53686789 53686805 1.0E-06 TTTCTAGGCCCTTCTCC 17 V_ATF5_01_M01295 TRANSFAC - 53686656 53686666 3.0E-06 ACTCTTCCTTT 11 V_BTEB3_Q5_M01865 TRANSFAC + 53686654 53686666 5.0E-06 CAAAAGGAAGAGT 13 V_ZFX_01_M01593 TRANSFAC + 53686351 53686366 6.0E-06 GGCCGGGCCGCGGGGC 16 V_SP1_Q6_01_M00931 TRANSFAC - 53685915 53685924 4.0E-06 GGGGCGGGGC 10 V_DR4_Q2_M00965 TRANSFAC - 53686426 53686442 1.0E-06 TGACCTCCACTGGCCCC 17 V_GBX2_01_M01382 TRANSFAC + 53685751 53685767 9.0E-06 ACTGCCAATTAGAGATA 17 V_HFH4_01_M00742 TRANSFAC - 53685787 53685799 9.0E-06 TTACGTTTGCTTT 13 V_PEA3_01_M01991 TRANSFAC + 53685944 53685953 8.0E-06 ACCGGAAGTC 10 V_TAL1_GATA1_01_M02243 TRANSFAC + 53685752 53685769 1.0E-06 CTGCCAATTAGAGATAAA 18 V_TAL1_GATA1_01_M02243 TRANSFAC + 53686674 53686691 2.0E-06 CTGCCAAATAAAGATAAA 18 V_HNF1_C_M00206 TRANSFAC + 53685838 53685854 2.0E-06 GGTTAAATATTTTCTCA 17 V_ELK1_06_M02059 TRANSFAC + 53685944 53685953 4.0E-06 ACCGGAAGTC 10 V_HELIOSA_02_M01004 TRANSFAC + 53685807 53685817 6.0E-06 ACTAGGAAAAC 11 V_PR_01_M00954 TRANSFAC + 53685965 53685991 3.0E-06 GCCGGAGGTTGGTGATGTTCTCCAGCG 27 V_SAP1A_02_M01983 TRANSFAC + 53685944 53685953 7.0E-06 ACCGGAAGTC 10 V_HNF1_Q6_M00790 TRANSFAC - 53686677 53686694 8.0E-06 TGGTTTATCTTTATTTGG 18 V_CREL_01_M00053 TRANSFAC - 53685811 53685820 9.0E-06 GGGGTTTTCC 10 V_ERG_01_M01752 TRANSFAC + 53685944 53685952 4.0E-06 ACCGGAAGT 9 V_HNF1_Q6_01_M01011 TRANSFAC - 53685835 53685855 0.0E+00 ATGAGAAAATATTTAACCAGG 21 V_HNF1_Q6_01_M01011 TRANSFAC + 53686676 53686696 2.0E-06 GCCAAATAAAGATAAACCAAT 21 V_CETS2_01_M01989 TRANSFAC + 53685944 53685953 7.0E-06 ACCGGAAGTC 10 Tal1_Gata1_MA0140.1 JASPAR + 53685752 53685769 1.0E-06 CTGCCAATTAGAGATAAA 18 Tal1_Gata1_MA0140.1 JASPAR + 53686674 53686691 2.0E-06 CTGCCAAATAAAGATAAA 18 V_ELK1_02_M00025 TRANSFAC + 53685941 53685954 4.0E-06 ACCACCGGAAGTCC 14 V_CETS1P54_01_M00032 TRANSFAC + 53685944 53685953 5.0E-06 ACCGGAAGTC 10 V_SRF_Q5_02_M01007 TRANSFAC - 53686673 53686691 4.0E-06 TTTATCTTTATTTGGCAGT 19 V_CREB_Q2_01_M00916 TRANSFAC + 53686618 53686631 1.0E-05 GATCACGTCAGCTC 14 V_PEA3_02_M02066 TRANSFAC + 53685944 53685953 8.0E-06 ACCGGAAGTC 10 V_SP4_Q5_M01273 TRANSFAC + 53685915 53685925 2.0E-06 GCCCCGCCCCG 11 V_ZFP105_04_M02931 TRANSFAC + 53685836 53685852 7.0E-06 CTGGTTAAATATTTTCT 17 V_ERM_02_M02069 TRANSFAC + 53685944 53685953 8.0E-06 ACCGGAAGTC 10 V_ISX_01_M01331 TRANSFAC + 53685751 53685766 5.0E-06 ACTGCCAATTAGAGAT 16 V_ISX_01_M01331 TRANSFAC - 53685751 53685766 9.0E-06 ATCTCTAATTGGCAGT 16 V_NFYC_Q5_M02107 TRANSFAC + 53685752 53685765 3.0E-06 CTGCCAATTAGAGA 14 V_HNF1_01_M00132 TRANSFAC + 53685838 53685852 9.0E-06 GGTTAAATATTTTCT 15 V_ATF2_Q5_M01862 TRANSFAC - 53686619 53686630 1.0E-05 AGCTGACGTGAT 12 V_NRF2_01_M00108 TRANSFAC + 53685944 53685953 5.0E-06 ACCGGAAGTC 10 V_MYB_Q3_M00773 TRANSFAC + 53686507 53686517 4.0E-06 ACAGACAGTTA 11 V_T3RBETA_Q6_01_M02119 TRANSFAC + 53686427 53686443 0.0E+00 GGGCCAGTGGAGGTCAG 17 V_CETS1_02_M02063 TRANSFAC + 53685944 53685953 8.0E-06 ACCGGAAGTC 10 V_HNF1A_Q5_M02013 TRANSFAC + 53685838 53685848 9.0E-06 GGTTAAATATT 11 V_NET_02_M02060 TRANSFAC + 53685944 53685953 8.0E-06 ACCGGAAGTC 10 V_S8_02_M01376 TRANSFAC + 53685751 53685767 9.0E-06 ACTGCCAATTAGAGATA 17 V_HNF1A_01_M02162 TRANSFAC + 53685838 53685851 3.0E-06 GGTTAAATATTTTC 14 V_ETV3_02_M02068 TRANSFAC + 53685944 53685953 9.0E-06 ACCGGAAGTC 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.