Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PPOX Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 5498 protoporphyrinogen oxidase chr1 + 161131180 - 161136680 161136180 Transcription Factor Binding Sites   Download all TFBS in the PPOX promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints ZNF238_C2H2_full_monomeric_13_1 SELEX + 161136166 161136178 6.0E-06 AATCCAGATGTAG 13 Klf4_MA0039.2 JASPAR + 161136361 161136370 3.0E-06 AGGGTGTGGC 10 MYBL1_MYB_DBD_dimeric_12_2 SELEX + 161136070 161136081 7.0E-06 ACGGTTAACCTC 12 TEAD1_TEA_full_monomeric_10_1 SELEX - 161131920 161131929 2.0E-06 CACATTCCTT 10 HOXD11_homeodomain_DBD_monomeric_10_2 SELEX - 161136125 161136134 1.0E-05 ACCAATAAAA 10 HOXD13_homeodomain_DBD_monomeric_10_1 SELEX - 161136124 161136133 2.0E-06 CCAATAAAAC 10 HOXC11_homeodomain_full_monomeric_11_2 SELEX - 161136124 161136134 8.0E-06 ACCAATAAAAC 11 FOXI1_MA0042.1 JASPAR + 161135520 161135531 4.0E-06 GCTTATTTGTAT 12 SPDEF_ETS_full_putative-multimer_15_1 SELEX - 161136139 161136153 5.0E-06 AAGGCCCCGGATCAC 15 Gata1_MA0035.2 JASPAR - 161136370 161136380 8.0E-06 GCAGATAAGGG 11 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 161136124 161136133 1.0E-06 CCAATAAAAC 10 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX - 161136125 161136133 6.0E-06 CCAATAAAA 9 HOXC13_homeodomain_DBD_monomeric_10_1 SELEX - 161136124 161136133 1.0E-06 CCAATAAAAC 10 FOXO3_forkhead_full_putatively-multimeric_11_1 SELEX - 161131942 161131952 1.0E-06 TTTCCCCACCC 11 TEAD4_TEA_DBD_monomeric_10_1 SELEX - 161131920 161131929 2.0E-06 CACATTCCTT 10 IRF3_IRF_full_trimeric_21_1 SELEX + 161131915 161131935 6.0E-06 TCTAAAAGGAATGTGAAATGG 21 FOXO1_forkhead_DBD_putatively-multimeric_12_1 SELEX - 161131941 161131952 8.0E-06 TTTCCCCACCCC 12 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 161135519 161135531 8.0E-06 ATACAAATAAGCA 13 FOXC1_forkhead_DBD_dimeric_13_1 SELEX - 161135523 161135535 8.0E-06 AAAAATACAAATA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 161135523 161135535 8.0E-06 AAAAATACAAATA 13 HOXB13_homeodomain_DBD_monomeric_10_1 SELEX - 161136124 161136133 1.0E-06 CCAATAAAAC 10 V_FOXP1_01_M00987 TRANSFAC + 161135516 161135535 7.0E-06 ATGTGCTTATTTGTATTTTT 20 V_FOXP1_01_M00987 TRANSFAC + 161135522 161135541 0.0E+00 TTATTTGTATTTTTGCTTAG 20 V_STAT5A_Q6_M01890 TRANSFAC - 161141116 161141128 6.0E-06 TATTTTCTAATAA 13 V_FREAC7_01_M00293 TRANSFAC - 161135519 161135534 7.0E-06 AAAATACAAATAAGCA 16 V_GEN_INI_B_M00315 TRANSFAC + 161136432 161136439 1.0E-05 CCTCATTT 8 V_GATA1_Q6_M02004 TRANSFAC - 161136369 161136383 2.0E-06 GGTGCAGATAAGGGC 15 V_GATA2_02_M00348 TRANSFAC + 161132027 161132036 2.0E-06 AGAGATAACA 10 V_MTF1_Q4_M00650 TRANSFAC + 161136376 161136389 4.0E-06 TCTGCACCCAGCAG 14 V_AR_Q6_01_M01996 TRANSFAC - 161136205 161136219 4.0E-06 GTCCACTCTGTTCTC 15 V_HNF3_Q6_01_M01012 TRANSFAC + 161135518 161135535 4.0E-06 GTGCTTATTTGTATTTTT 18 V_PU1_Q4_M01172 TRANSFAC - 161135698 161135716 3.0E-06 AGTATGCCTTTCCTCTTTT 19 V_HOXD13_01_M01404 TRANSFAC - 161136121 161136136 1.0E-06 TCACCAATAAAACATT 16 V_RHOX11_02_M01384 TRANSFAC + 161135846 161135862 8.0E-06 AAGGAGCTGTTTATGGA 17 V_TAL1_GATA1_01_M02243 TRANSFAC + 161132018 161132035 3.0E-06 GTGGTCTGGAGAGATAAC 18 V_TAL1_GATA1_01_M02243 TRANSFAC - 161136372 161136389 0.0E+00 CTGCTGGGTGCAGATAAG 18 V_GEN_INI3_B_M00314 TRANSFAC + 161136432 161136439 1.0E-05 CCTCATTT 8 V_FKLF_Q5_M01837 TRANSFAC + 161136247 161136256 2.0E-06 GGGGTGGGAG 10 V_HOXB13_01_M01467 TRANSFAC - 161136121 161136136 4.0E-06 TCACCAATAAAACATT 16 V_IRF3_Q3_M01279 TRANSFAC + 161135528 161135540 6.0E-06 GTATTTTTGCTTA 13 V_HNF3_Q6_M00791 TRANSFAC - 161135521 161135533 9.0E-06 AAATACAAATAAG 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC + 161135523 161135533 3.0E-06 TATTTGTATTT 11 Tal1_Gata1_MA0140.1 JASPAR + 161132018 161132035 3.0E-06 GTGGTCTGGAGAGATAAC 18 Tal1_Gata1_MA0140.1 JASPAR - 161136372 161136389 0.0E+00 CTGCTGGGTGCAGATAAG 18 V_GR_Q6_M00192 TRANSFAC - 161136204 161136222 5.0E-06 TCCGTCCACTCTGTTCTCG 19 V_GATA1_09_M02254 TRANSFAC - 161136370 161136380 8.0E-06 GCAGATAAGGG 11 V_ELK1_02_M00025 TRANSFAC - 161132128 161132141 9.0E-06 CTTGCCGGAAGTCC 14 V_STAT4_Q5_M02117 TRANSFAC + 161141116 161141125 6.0E-06 TTATTAGAAA 10 V_BLIMP1_Q6_M01066 TRANSFAC + 161131921 161131936 6.0E-06 AGGAATGTGAAATGGT 16 V_NKX23_01_M01457 TRANSFAC + 161136264 161136279 4.0E-06 TTTGAAGCACTTGTTG 16 V_TFIII_Q6_M00706 TRANSFAC + 161136180 161136188 1.0E-05 AGAGGTAGG 9 V_GR_Q6_02_M01836 TRANSFAC - 161136204 161136216 3.0E-06 CACTCTGTTCTCG 13 V_GATA1_04_M00128 TRANSFAC - 161136369 161136381 6.0E-06 TGCAGATAAGGGC 13 V_OCT1_Q6_M00195 TRANSFAC - 161135521 161135535 0.0E+00 AAAAATACAAATAAG 15 V_GATA3_02_M00350 TRANSFAC + 161132027 161132036 2.0E-06 AGAGATAACA 10 V_GEN_INI2_B_M00313 TRANSFAC + 161136432 161136439 1.0E-05 CCTCATTT 8 V_RHOX11_05_M03099 TRANSFAC + 161135846 161135862 8.0E-06 AAGGAGCTGTTTATGGA 17 V_AIRE_01_M00999 TRANSFAC - 161131896 161131921 5.0E-06 TTTTAGAGAGGAAAGATAGGAGAATA 26 V_TCF7_04_M02921 TRANSFAC + 161141114 161141128 0.0E+00 CTTTATTAGAAAATA 15 V_NKX22_01_M00485 TRANSFAC - 161136268 161136277 1.0E-05 ACAAGTGCTT 10 V_FPM315_01_M01587 TRANSFAC - 161132194 161132205 2.0E-06 GAGGGAGCAGGA 12 V_LMO2COM_02_M00278 TRANSFAC - 161136371 161136379 3.0E-06 CAGATAAGG 9 V_ZFP281_01_M01597 TRANSFAC + 161131939 161131949 1.0E-06 TGGGGGTGGGG 11 V_BBX_03_M02739 TRANSFAC - 161136115 161136129 4.0E-06 TAAAACATTGAACTG 15 V_TITF1_Q3_M00432 TRANSFAC - 161135712 161135721 1.0E-06 ACTCAAGTAT 10 V_GATA2_03_M00349 TRANSFAC + 161132027 161132036 2.0E-06 AGAGATAACA 10 V_HFH3_01_M00289 TRANSFAC + 161135520 161135532 3.0E-06 GCTTATTTGTATT 13 V_EKLF_Q5_M01874 TRANSFAC - 161136360 161136369 5.0E-06 CCACACCCTC 10 V_UF1H3BETA_Q6_M01068 TRANSFAC + 161131937 161131950 5.0E-06 GCTGGGGGTGGGGA 14 V_TCF3_05_M02920 TRANSFAC - 161135525 161135539 1.0E-05 AAGCAAAAATACAAA 15 V_COUP_DR1_Q6_M00765 TRANSFAC + 161135657 161135669 8.0E-06 GGACCTGTGTCCC 13 V_GLIS2_04_M02863 TRANSFAC + 161141115 161141128 2.0E-06 TTTATTAGAAAATA 14 V_STAT1_05_M01260 TRANSFAC - 161141106 161141127 6.0E-06 ATTTTCTAATAAAGGACTTTGT 22 V_GATA1_06_M00347 TRANSFAC + 161132027 161132036 8.0E-06 AGAGATAACA 10

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.