Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

C1orf27 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 54953 chromosome 1 open reading frame 27 chr1 + 186339889 - 186345389 186344889 Transcription Factor Binding Sites   Download all TFBS in the C1orf27 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints CTCF_MA0139.1 JASPAR + 186344744 186344762 3.0E-06 GAGCCACTAGAGGGCATCG 19 ZNF306_C2H2_full_monomeric_14_1 SELEX - 186344431 186344444 8.0E-06 AGGGATAGCCTCTG 14 CUX1_CUT_DBD_dimeric_17_1 SELEX - 186344050 186344066 2.0E-06 AGCAATCCGAGATCGAT 17 SOX8_HMG_full_dimeric_17_1 SELEX + 186344975 186344991 2.0E-06 ATTCAGTGGCAGTGAAT 17 Pax4_MA0068.1 JASPAR - 186344508 186344537 7.0E-06 AAAAGAATGAGAAAAACACTACATTTCCCA 30 SPIB_ETS_DBD_monomeric_14_1 SELEX - 186344567 186344580 6.0E-06 GAAAAACGGAAGCT 14 TCF4_bHLH_full_dimeric_10_1 SELEX + 186346913 186346922 3.0E-06 CACACCTGTA 10 SP1_MA0079.2 JASPAR - 186344824 186344833 7.0E-06 CCCCGCCCCC 10 NFATC1_NFAT_full_dimeric_20_1 SELEX + 186343756 186343775 6.0E-06 GAAGGAAAATAAGCGTCCCT 20 CTCF_C2H2_full_monomeric_17_1 SELEX - 186344745 186344761 3.0E-06 GATGCCCTCTAGTGGCT 17 SP1_C2H2_DBD_monomeric_11_1 SELEX - 186344824 186344834 4.0E-06 ACCCCGCCCCC 11 ZSCAN4_C2H2_full_monomeric_15_1 SELEX + 186345089 186345103 1.0E-06 TGCACATTCTGAAAA 15 ELK1_MA0028.1 JASPAR - 186344465 186344474 5.0E-06 AAGCCGGAAA 10 Hltf_MA0109.1 JASPAR + 186343682 186343691 1.0E-05 AAACATATAA 10 Hltf_MA0109.1 JASPAR - 186343686 186343695 2.0E-06 TACCTTATAT 10 VDR_nuclearreceptor_full_dimeric_16_1 SELEX - 186344410 186344425 8.0E-06 GGGTTCCCAGGGTTCG 16 SPI1_ETS_full_monomeric_14_1 SELEX - 186344567 186344580 6.0E-06 GAAAAACGGAAGCT 14 BHLHA15_bHLH_DBD_dimeric_10_1 SELEX + 186345193 186345202 3.0E-06 ACCATATGGA 10 BHLHA15_bHLH_DBD_dimeric_10_1 SELEX - 186345193 186345202 6.0E-06 TCCATATGGT 10 NFIA_NFI_full_monomeric_10_1 SELEX - 186343613 186343622 5.0E-06 TTTGCCAAAT 10 TBX1_TBX_DBD_dimeric_20_1 SELEX + 186344933 186344952 8.0E-06 GAGTGGGAAGTGAGGTGTGG 20 TBX1_TBX_DBD_dimeric_20_1 SELEX - 186346912 186346931 9.0E-06 TGCTGGGATTACAGGTGTGA 20 RREB1_MA0073.1 JASPAR - 186345261 186345280 7.0E-06 CTCCCCACCACCAAAAACCA 20 V_RUSH1A_02_M01107 TRANSFAC + 186343682 186343691 1.0E-05 AAACATATAA 10 V_RUSH1A_02_M01107 TRANSFAC - 186343686 186343695 2.0E-06 TACCTTATAT 10 V_FLI1_Q6_M01208 TRANSFAC + 186343898 186343908 2.0E-06 CAGGAAGTGAG 11 V_CEBP_Q3_M00770 TRANSFAC + 186343611 186343622 2.0E-06 CAATTTGGCAAA 12 V_ATF4_Q6_M01864 TRANSFAC + 186344888 186344896 6.0E-06 TACGTCATC 9 V_STAT_Q6_M00777 TRANSFAC + 186344531 186344543 6.0E-06 TTCTTTTCCGGGA 13 V_EBOX_Q6_01_M01034 TRANSFAC + 186344905 186344914 6.0E-06 CCACCTGACT 10 V_SP1_Q6_01_M00931 TRANSFAC + 186344825 186344834 7.0E-06 GGGGCGGGGT 10 V_CREB_Q4_01_M00917 TRANSFAC - 186344887 186344897 4.0E-06 TGATGACGTAA 11 V_NFAT3_Q3_M01734 TRANSFAC - 186343758 186343767 3.0E-06 TTATTTTCCT 10 V_PLAG1_02_M01973 TRANSFAC - 186344813 186344828 2.0E-06 CCCCCTTCTGGGCGCC 16 V_SP1_03_M02281 TRANSFAC - 186344824 186344833 7.0E-06 CCCCGCCCCC 10 V_CREB_01_M00039 TRANSFAC - 186344887 186344894 1.0E-05 TGACGTAA 8 V_AP2_Q6_M00189 TRANSFAC + 186344290 186344301 7.0E-06 CGCCCGCCGGAG 12 V_JUNDM2_03_M02772 TRANSFAC + 186344883 186344898 8.0E-06 GCTTTTACGTCATCAA 16 V_DLX2_01_M01468 TRANSFAC - 186345066 186345081 9.0E-06 CAGACAATTACCTCGG 16 V_PITX2_Q6_M02114 TRANSFAC + 186346919 186346928 1.0E-06 TGTAATCCCA 10 V_SP1_02_M01303 TRANSFAC + 186344825 186344835 3.0E-06 GGGGCGGGGTG 11 V_PU1_Q4_M01172 TRANSFAC - 186345169 186345187 7.0E-06 CACTGTCCCTTCCTTTTTC 19 V_GM497_04_M02864 TRANSFAC + 186343576 186343591 9.0E-06 CGACGCACACACTAAG 16 V_GM497_04_M02864 TRANSFAC + 186345210 186345225 2.0E-06 TCCGGCACACACTTCT 16 V_LDSPOLYA_B_M00317 TRANSFAC + 186345145 186345160 4.0E-06 TGTGTGTGTGCTCTCT 16 V_LDSPOLYA_B_M00317 TRANSFAC + 186345147 186345162 7.0E-06 TGTGTGTGCTCTCTTT 16 V_ETS_Q4_M00771 TRANSFAC - 186343898 186343909 7.0E-06 CCTCACTTCCTG 12 V_GC_01_M00255 TRANSFAC - 186344476 186344489 8.0E-06 AGTGGGTGGAGCTG 14 V_GC_01_M00255 TRANSFAC + 186344823 186344836 4.0E-06 AGGGGGCGGGGTGG 14 V_SOX7_03_M02807 TRANSFAC - 186346862 186346883 3.0E-06 TTTTGACAACAATAGACGTGAA 22 V_ETV7_01_M02071 TRANSFAC - 186344533 186344542 7.0E-06 CCCGGAAAAG 10 V_SP4_03_M02810 TRANSFAC - 186344819 186344835 1.0E-06 CACCCCGCCCCCTTCTG 17 V_HOXA3_07_M02869 TRANSFAC - 186345255 186345268 1.0E-06 AAAAACCATTTAGG 14 V_AP1_Q4_M00188 TRANSFAC + 186346906 186346916 1.0E-05 GGTGACTCACA 11 V_SP1_Q6_M00196 TRANSFAC + 186344823 186344835 1.0E-06 AGGGGGCGGGGTG 13 V_E4F1_Q6_01_M02091 TRANSFAC - 186344886 186344895 6.0E-06 ATGACGTAAA 10 V_JUNDM2_04_M02876 TRANSFAC + 186346903 186346918 2.0E-06 CATGGTGACTCACACC 16 V_JUNDM2_04_M02876 TRANSFAC - 186346904 186346919 4.0E-06 AGGTGTGAGTCACCAT 16 V_CREBATF_Q6_M00981 TRANSFAC - 186344887 186344895 9.0E-06 ATGACGTAA 9 V_SP1SP3_Q4_M01219 TRANSFAC - 186344821 186344831 4.0E-06 CCGCCCCCTTC 11 V_TEL2_Q6_M00678 TRANSFAC - 186343898 186343907 4.0E-06 TCACTTCCTG 10 V_STAT4_Q5_M02117 TRANSFAC + 186345344 186345353 2.0E-06 TTAAAAGAAA 10 V_AP1_01_M00517 TRANSFAC - 186346905 186346917 9.0E-06 GTGTGAGTCACCA 13 V_SP1_01_M00008 TRANSFAC + 186344825 186344834 3.0E-06 GGGGCGGGGT 10 V_CTCF_02_M01259 TRANSFAC + 186344741 186344760 1.0E-06 ACTGAGCCACTAGAGGGCAT 20 V_CTCF_02_M01259 TRANSFAC + 186344812 186344831 6.0E-06 TGGCGCCCAGAAGGGGGCGG 20 V_CTCF_01_M01200 TRANSFAC + 186344743 186344762 3.0E-06 TGAGCCACTAGAGGGCATCG 20 V_CTCF_01_M01200 TRANSFAC + 186344814 186344833 5.0E-06 GCGCCCAGAAGGGGGCGGGG 20 V_BLIMP1_Q6_M01066 TRANSFAC + 186344980 186344995 9.0E-06 GTGGCAGTGAATTGAG 16 V_ISGF4G_04_M02875 TRANSFAC - 186344514 186344527 1.0E-06 GAAAAACACTACAT 14 V_FAC1_01_M00456 TRANSFAC + 186343677 186343690 2.0E-06 CAACAAAACATATA 14 V_AREB6_02_M00413 TRANSFAC + 186346912 186346923 6.0E-06 TCACACCTGTAA 12 V_BARHL1_01_M01332 TRANSFAC - 186345253 186345268 0.0E+00 AAAAACCATTTAGGTA 16 V_FOXJ3_06_M02855 TRANSFAC + 186343675 186343691 0.0E+00 TGCAACAAAACATATAA 17 V_ATF1_03_M02738 TRANSFAC + 186344883 186344898 8.0E-06 GCTTTTACGTCATCAA 16 V_PITX2_Q2_M00482 TRANSFAC + 186346919 186346929 1.0E-06 TGTAATCCCAG 11 V_TBX5_Q5_M01044 TRANSFAC + 186346911 186346920 3.0E-06 CTCACACCTG 10 V_PUR1_Q4_M01721 TRANSFAC + 186345179 186345187 6.0E-06 GGGACAGTG 9 V_YY1_01_M00059 TRANSFAC - 186345252 186345268 9.0E-06 AAAAACCATTTAGGTAC 17 V_CREB_02_M00113 TRANSFAC - 186344887 186344898 0.0E+00 TTGATGACGTAA 12 V_BSX_01_M01442 TRANSFAC - 186345066 186345081 7.0E-06 CAGACAATTACCTCGG 16 V_BARHL2_01_M01446 TRANSFAC - 186345253 186345268 2.0E-06 AAAAACCATTTAGGTA 16 V_SP1_Q2_01_M00933 TRANSFAC - 186344824 186344833 4.0E-06 CCCCGCCCCC 10 V_GATA5_03_M02756 TRANSFAC - 186343840 186343856 9.0E-06 CAGTTTGATAAGAAGCC 17 V_SP1_Q4_01_M00932 TRANSFAC + 186344823 186344835 1.0E-06 AGGGGGCGGGGTG 13 V_HOXD10_01_M01375 TRANSFAC + 186343673 186343689 7.0E-06 AGTGCAACAAAACATAT 17 V_NANOG_02_M01247 TRANSFAC - 186344517 186344536 6.0E-06 AAAGAATGAGAAAAACACTA 20 V_NANOG_02_M01247 TRANSFAC - 186346864 186346883 8.0E-06 TTTTGACAACAATAGACGTG 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.