Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RHBDL2 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 54933 rhomboid, veinlet-like 2 (Drosophila) chr1 - 39406956 - 39412456 39407456 Transcription Factor Binding Sites   Download all TFBS in the RHBDL2 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints FOXB1_forkhead_DBD_dimeric_18_1 SELEX + 39404597 39404614 2.0E-06 TCAGTAAATATTTGTCAA 18 FOXB1_forkhead_DBD_dimeric_18_1 SELEX - 39404597 39404614 2.0E-06 TTGACAAATATTTACTGA 18 LBX2_homeodomain_DBD_dimeric_13_1 SELEX - 39409712 39409724 5.0E-06 ATCAACCTAGTTA 13 NF-kappaB_MA0061.1 JASPAR - 39407540 39407549 4.0E-06 GGGGATTTCC 10 SPIC_ETS_full_monomeric_14_1 SELEX + 39409749 39409762 1.0E-06 GAAATCAGGAAGAA 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX + 39404599 39404612 2.0E-06 AGTAAATATTTGTC 14 FOXD2_forkhead_DBD_dimeric_14_1 SELEX - 39404599 39404612 0.0E+00 GACAAATATTTACT 14 Pax4_MA0068.1 JASPAR + 39404602 39404631 7.0E-06 AAATATTTGTCAAATTCATTTACTCACAAA 30 REL_MA0101.1 JASPAR - 39407540 39407549 1.0E-06 GGGGATTTCC 10 FOXD3_forkhead_DBD_dimeric_14_1 SELEX + 39404599 39404612 4.0E-06 AGTAAATATTTGTC 14 FOXD3_forkhead_DBD_dimeric_14_1 SELEX - 39404599 39404612 0.0E+00 GACAAATATTTACT 14 RELA_MA0107.1 JASPAR - 39407540 39407549 2.0E-06 GGGGATTTCC 10 FOXI1_MA0042.1 JASPAR - 39402940 39402951 3.0E-06 TAGTATTTGTTT 12 FOXC1_forkhead_DBD_dimeric_14_1 SELEX + 39404599 39404612 2.0E-06 AGTAAATATTTGTC 14 FOXC1_forkhead_DBD_dimeric_14_1 SELEX - 39404599 39404612 1.0E-06 GACAAATATTTACT 14 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 39402938 39402948 1.0E-05 TAAAACAAATA 11 Foxd3_MA0041.1 JASPAR - 39402936 39402947 6.0E-06 ATTTGTTTTATT 12 FOXC2_forkhead_DBD_dimeric_14_1 SELEX + 39404599 39404612 3.0E-06 AGTAAATATTTGTC 14 FOXC2_forkhead_DBD_dimeric_14_1 SELEX - 39404599 39404612 2.0E-06 GACAAATATTTACT 14 FOXC1_forkhead_DBD_dimeric_13_1 SELEX + 39402936 39402948 1.0E-06 AATAAAACAAATA 13 FOXB1_forkhead_DBD_monomeric_11_1 SELEX + 39404597 39404607 9.0E-06 TCAGTAAATAT 11 V_CEBPG_Q6_M00622 TRANSFAC - 39402929 39402941 0.0E+00 TTTATTTAAGAAT 13 V_CEBPG_Q6_M00622 TRANSFAC - 39409744 39409756 6.0E-06 CTGATTTCTCAAT 13 V_NFKAPPAB65_01_M00052 TRANSFAC - 39407540 39407549 3.0E-06 GGGGATTTCC 10 V_HNF3B_01_M00131 TRANSFAC - 39402939 39402953 1.0E-06 CGTAGTATTTGTTTT 15 V_AML_Q6_M00769 TRANSFAC - 39409728 39409742 4.0E-06 TTGTTTGTGGTCACC 15 V_FXR_Q3_M00631 TRANSFAC + 39409699 39409712 4.0E-06 CAGCTGGAATAACT 14 V_OSF2_Q6_M00731 TRANSFAC + 39409732 39409739 1.0E-05 ACCACAAA 8 V_FOXD3_01_M00130 TRANSFAC - 39402936 39402947 5.0E-06 ATTTGTTTTATT 12 V_MMEF2_Q6_M00405 TRANSFAC + 39402929 39402944 9.0E-06 ATTCTTAAATAAAACA 16 V_HOXA13_02_M01297 TRANSFAC + 39402935 39402943 1.0E-06 AAATAAAAC 9 V_RELBP52_01_M01239 TRANSFAC - 39407540 39407549 1.0E-06 GGGGATTTCC 10 V_ZFP740_03_M02834 TRANSFAC - 39409594 39409609 8.0E-06 CTCCCACCCCCACTCC 16 V_P50P50_Q3_M01223 TRANSFAC - 39407538 39407550 8.0E-06 AGGGGATTTCCTC 13 V_HNF3_Q6_01_M01012 TRANSFAC - 39402936 39402953 3.0E-06 CGTAGTATTTGTTTTATT 18 V_HFH4_01_M00742 TRANSFAC - 39402939 39402951 1.0E-06 TAGTATTTGTTTT 13 V_CEBPB_01_M00109 TRANSFAC + 39409742 39409755 4.0E-06 AGATTGAGAAATCA 14 V_FKLF_Q5_M01837 TRANSFAC + 39409600 39409609 2.0E-06 GGGGTGGGAG 10 V_XFD3_01_M00269 TRANSFAC + 39404597 39404610 4.0E-06 TCAGTAAATATTTG 14 V_CREL_01_M00053 TRANSFAC - 39407540 39407549 1.0E-06 GGGGATTTCC 10 V_KROX_Q6_M00982 TRANSFAC - 39409594 39409607 1.0E-05 CCCACCCCCACTCC 14 V_HNF3_Q6_M00791 TRANSFAC + 39402938 39402950 3.0E-06 TAAAACAAATACT 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 39402938 39402948 0.0E+00 TATTTGTTTTA 11 V_NFKAPPAB50_01_M00051 TRANSFAC - 39407540 39407549 6.0E-06 GGGGATTTCC 10 V_PEBP_Q6_M00984 TRANSFAC + 39409728 39409742 1.0E-06 GGTGACCACAAACAA 15 V_SPIB_01_M01204 TRANSFAC + 39409749 39409765 7.0E-06 GAAATCAGGAAGAATGG 17 V_RREB1_01_M00257 TRANSFAC + 39407478 39407491 4.0E-06 CCCCAAACAAAAAT 14 V_AP1_C_M00199 TRANSFAC + 39409546 39409554 3.0E-06 ATGAGTCAG 9 V_MEF2_Q6_01_M00941 TRANSFAC - 39402933 39402944 4.0E-06 TGTTTTATTTAA 12 V_ARID3A_04_M02735 TRANSFAC - 39402928 39402944 8.0E-06 TGTTTTATTTAAGAATA 17 V_ARID3A_04_M02735 TRANSFAC + 39402929 39402945 4.0E-06 ATTCTTAAATAAAACAA 17 V_GATA4_Q3_M00632 TRANSFAC + 39409748 39409759 7.0E-06 AGAAATCAGGAA 12 V_MTF1_06_M02882 TRANSFAC + 39402935 39402948 6.0E-06 AAATAAAACAAATA 14 V_FAC1_01_M00456 TRANSFAC + 39402935 39402948 9.0E-06 AAATAAAACAAATA 14 V_HNF1_01_M00132 TRANSFAC + 39404599 39404613 5.0E-06 AGTAAATATTTGTCA 15 V_FOXL1_02_M02857 TRANSFAC + 39402929 39402944 2.0E-06 ATTCTTAAATAAAACA 16 V_FOXL1_02_M02857 TRANSFAC + 39402934 39402949 1.0E-06 TAAATAAAACAAATAC 16 V_TBX15_02_M01264 TRANSFAC - 39404564 39404581 9.0E-06 AGGTAATAGGGAGTCAAA 18 V_FOX_Q2_M00809 TRANSFAC - 39402939 39402951 2.0E-06 TAGTATTTGTTTT 13 V_STAT6_02_M00500 TRANSFAC - 39407539 39407546 1.0E-05 GATTTCCT 8 V_PLZF_02_M01075 TRANSFAC + 39404589 39404617 9.0E-06 GGAATGCATCAGTAAATATTTGTCAAATT 29 V_NFKAPPAB_01_M00054 TRANSFAC - 39407540 39407549 4.0E-06 GGGGATTTCC 10 V_SRF_06_M02916 TRANSFAC + 39402932 39402948 5.0E-06 CTTAAATAAAACAAATA 17 V_HFH3_01_M00289 TRANSFAC - 39402939 39402951 3.0E-06 TAGTATTTGTTTT 13 V_FOXJ2_01_M00422 TRANSFAC + 39402936 39402953 1.0E-06 AATAAAACAAATACTACG 18 V_SOX18_04_M02905 TRANSFAC + 39404608 39404623 9.0E-06 TTGTCAAATTCATTTA 16 V_SOX12_03_M02796 TRANSFAC - 39402935 39402948 5.0E-06 TATTTGTTTTATTT 14 V_PIT1_Q6_M00802 TRANSFAC + 39402928 39402945 0.0E+00 TATTCTTAAATAAAACAA 18 V_GLIS2_04_M02863 TRANSFAC + 39402926 39402939 6.0E-06 AGTATTCTTAAATA 14 V_GLIS2_04_M02863 TRANSFAC - 39402931 39402944 1.0E-05 TGTTTTATTTAAGA 14 V_CEBPG_Q6_01_M01869 TRANSFAC + 39409743 39409754 6.0E-06 GATTGAGAAATC 12

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.