Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

YTHDF1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 54915 YTH domain family, member 1 chr20 - 61847038 - 61852538 61847538 Transcription Factor Binding Sites   Download all TFBS in the YTHDF1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Egr1_MA0162.1 JASPAR - 61847761 61847771 9.0E-06 TGTGTGGGCGG 11 NFIA_NFI_full_dimeric_15_1 SELEX + 61849320 61849334 4.0E-06 TTGGCGTCAGGCCAG 15 ZNF435_C2H2_full_dimeric_18_1 SELEX - 61849332 61849349 0.0E+00 AGTGTTGACAGAGCCCTG 18 NFIX_NFI_full_dimeric_15_2 SELEX - 61849320 61849334 8.0E-06 CTGGCCTGACGCCAA 15 ETV2_ETS_DBD_monomeric_11_1 SELEX - 61846838 61846848 4.0E-06 AACCGGAAACT 11 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX + 61846492 61846505 1.0E-05 AAGCCATAATGTCA 14 MGA_TBX_DBD_dimeric_18_1 SELEX + 61846443 61846460 2.0E-06 AAGTGTCACTTAACAGTT 18 MGA_TBX_DBD_dimeric_18_1 SELEX - 61846443 61846460 3.0E-06 AACTGTTAAGTGACACTT 18 ELK1_MA0028.1 JASPAR - 61846840 61846849 1.0E-06 GAACCGGAAA 10 Evi1_MA0029.1 JASPAR - 61846932 61846945 0.0E+00 AGGACAAGATAATA 14 NFIB_NFI_full_dimeric_15_1 SELEX + 61849320 61849334 4.0E-06 TTGGCGTCAGGCCAG 15 JDP2_bZIP_full_dimeric_9_1 SELEX + 61844317 61844325 7.0E-06 ATGACTCAC 9 REST_MA0138.2 JASPAR + 61846566 61846586 3.0E-06 TGCAGAACCTTGGACTGCCCC 21 ETV6_ETS_full_dimeric_15_1 SELEX - 61846838 61846852 3.0E-06 CTGGAACCGGAAACT 15 ELF5_MA0136.1 JASPAR + 61846118 61846126 5.0E-06 AATTTCCTT 9 BHLHB3_bHLH_full_dimeric_10_1 SELEX - 61847074 61847083 6.0E-06 CGCACGTGAC 10 V_HNF3B_01_M00131 TRANSFAC - 61844299 61844313 6.0E-06 TGCCCTGTTTTCTTA 15 V_MEIS1_02_M01419 TRANSFAC + 61846764 61846779 1.0E-06 TTCGACCTGTCAAATC 16 V_ZSCAN4_03_M02838 TRANSFAC - 61844358 61844374 6.0E-06 AGATGGTGCACATAAAG 17 V_PREP1_01_M01459 TRANSFAC + 61846764 61846779 1.0E-06 TTCGACCTGTCAAATC 16 V_EVI1_05_M00082 TRANSFAC - 61846934 61846944 7.0E-06 GGACAAGATAA 11 V_ZFX_01_M01593 TRANSFAC - 61847711 61847726 7.0E-06 CGCCAGGCCCCGCGGC 16 V_NF1A_Q6_M02103 TRANSFAC - 61849319 61849334 3.0E-06 CTGGCCTGACGCCAAG 16 V_RORA1_01_M00156 TRANSFAC - 61848133 61848145 1.0E-05 AAATCGGGGTCAA 13 V_EVI1_04_M00081 TRANSFAC - 61846152 61846166 2.0E-06 AGACAAAAAAAGTTA 15 V_BCL6_01_M01183 TRANSFAC - 61846422 61846437 3.0E-06 TTACTTGGAACACTTT 16 V_EBOX_Q6_01_M01034 TRANSFAC - 61847686 61847695 4.0E-06 CCACGTGACT 10 V_MEIS1AHOXA9_01_M00420 TRANSFAC - 61846762 61846775 5.0E-06 TGACAGGTCGAAGA 14 V_EVI1_02_M00079 TRANSFAC - 61846934 61846944 1.0E-06 GGACAAGATAA 11 V_SOX11_04_M02899 TRANSFAC - 61844384 61844397 7.0E-06 AGAATTGTTGGGAG 14 V_GABPA_04_M02858 TRANSFAC - 61846605 61846620 8.0E-06 CCTTTTTCCGCCCAGC 16 V_EGR1_02_M01972 TRANSFAC - 61847761 61847771 7.0E-06 TGTGTGGGCGG 11 V_SP1_02_M01303 TRANSFAC + 61847639 61847649 8.0E-06 GGGGCGGGGAC 11 V_TGIF2_01_M01407 TRANSFAC + 61846764 61846779 4.0E-06 TTCGACCTGTCAAATC 16 V_BACH1_01_M00495 TRANSFAC - 61844314 61844328 8.0E-06 CCAGTGAGTCATAGC 15 V_MEIS2_01_M01488 TRANSFAC + 61846764 61846779 1.0E-06 TTCGACCTGTCAAATC 16 V_RXRA_03_M02791 TRANSFAC + 61848129 61848145 4.0E-06 ATTCTTGACCCCGATTT 17 V_ZBED6_01_M01598 TRANSFAC + 61848093 61848104 7.0E-06 GAGGCTCGCCGG 12 V_ELF5_01_M01197 TRANSFAC - 61846118 61846128 4.0E-06 ACAAGGAAATT 11 V_HOX13_01_M00023 TRANSFAC + 61846920 61846949 8.0E-06 TCCGCTCACCTTTATTATCTTGTCCTTTTG 30 V_REST_01_M01256 TRANSFAC + 61846091 61846112 4.0E-06 TCTGAGTTCTGTCCTTTGTCCA 22 V_EVI1_Q3_M02002 TRANSFAC + 61846935 61846943 2.0E-06 TATCTTGTC 9 V_ZBRK1_01_M01105 TRANSFAC - 61847917 61847931 4.0E-06 GGCGGGCAGGTGTTT 15 V_ATF3_Q6_M00513 TRANSFAC + 61844371 61844384 2.0E-06 ATCTGATGTCATCC 14 V_AP1_01_M00517 TRANSFAC - 61844315 61844327 9.0E-06 CAGTGAGTCATAG 13 V_AP1_Q2_01_M00924 TRANSFAC + 61844318 61844329 8.0E-06 TGACTCACTGGG 12 V_EVI1_06_M00011 TRANSFAC - 61846934 61846942 2.0E-06 ACAAGATAA 9 V_GR_Q6_02_M01836 TRANSFAC + 61846943 61846955 6.0E-06 CCTTTTGTTCTCT 13 V_LRH1_Q5_M01142 TRANSFAC + 61846569 61846580 1.0E-05 AGAACCTTGGAC 12 V_AP1_Q4_01_M00926 TRANSFAC - 61844317 61844324 1.0E-05 TGAGTCAT 8 V_RARA_04_M02891 TRANSFAC - 61848130 61848145 3.0E-06 AAATCGGGGTCAAGAA 16 V_MYF6_04_M02885 TRANSFAC + 61847778 61847792 1.0E-05 GGCCACAGCCGCACC 15 V_MRG2_01_M01395 TRANSFAC + 61846764 61846779 2.0E-06 TTCGACCTGTCAAATC 16 V_PKNOX2_01_M01411 TRANSFAC + 61846764 61846779 5.0E-06 TTCGACCTGTCAAATC 16 V_STRA13_01_M00985 TRANSFAC - 61847072 61847085 6.0E-06 GTCGCACGTGACCG 14 V_DMRT7_01_M01151 TRANSFAC + 61846149 61846162 9.0E-06 ATGTAACTTTTTTT 14 V_ZFP206_01_M01742 TRANSFAC - 61847578 61847588 4.0E-06 CGCGCAGGCGC 11 V_FRA1_Q5_M01267 TRANSFAC - 61844317 61844324 1.0E-05 TGAGTCAT 8 V_NRSF_01_M00256 TRANSFAC + 61846566 61846586 5.0E-06 TGCAGAACCTTGGACTGCCCC 21 V_REST_02_M02256 TRANSFAC + 61846566 61846586 3.0E-06 TGCAGAACCTTGGACTGCCCC 21 V_E47_01_M00002 TRANSFAC - 61847915 61847929 2.0E-06 CGGGCAGGTGTTTGC 15 V_DMRT2_01_M01147 TRANSFAC + 61846145 61846160 8.0E-06 AAGTATGTAACTTTTT 16 V_SRF_06_M02916 TRANSFAC - 61846153 61846169 3.0E-06 CTAAGACAAAAAAAGTT 17 V_CTF1_01_M01196 TRANSFAC - 61849320 61849333 5.0E-06 TGGCCTGACGCCAA 14 V_UF1H3BETA_Q6_M01068 TRANSFAC - 61847900 61847913 4.0E-06 CGCGGGGGAAGGGC 14 V_TFE_Q6_M01029 TRANSFAC - 61846462 61846469 1.0E-05 TCATGTGA 8 V_ELF5_04_M02241 TRANSFAC + 61846118 61846126 5.0E-06 AATTTCCTT 9 V_SOX5_07_M02909 TRANSFAC - 61844384 61844400 6.0E-06 TGTAGAATTGTTGGGAG 17 TLX1_NFIC_MA0119.1 JASPAR - 61849320 61849333 5.0E-06 TGGCCTGACGCCAA 14 V_PAX4_04_M00380 TRANSFAC - 61846135 61846164 3.0E-06 ACAAAAAAAGTTACATACTTCCCCCACAGT 30 V_DMRT5_01_M01150 TRANSFAC + 61846147 61846161 7.0E-06 GTATGTAACTTTTTT 15 V_NANOG_02_M01247 TRANSFAC - 61846939 61846958 8.0E-06 TGCAGAGAACAAAAGGACAA 20

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.