Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

RNF43 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 54894 ring finger protein 43 chr17 - 56494431 - 56499931 56494931 Transcription Factor Binding Sites   Download all TFBS in the RNF43 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX - 56492238 56492253 1.0E-06 GAGCATATTTGATTAC 16 POU4F2_POU_full_monomeric_16_1 SELEX - 56492438 56492453 5.0E-06 TTGCATAACTACTTAG 16 PAX6_PAX_DBD_monomeric_19_1 SELEX + 56492207 56492225 5.0E-06 ATTCAAGCTTGACTGAATT 19 SOX10_HMG_full_dimeric_14_1 SELEX - 56492216 56492229 4.0E-06 TTAAAATTCAGTCA 14 SOX10_HMG_full_dimeric_14_1 SELEX + 56492220 56492233 9.0E-06 TGAATTTTAAGTGA 14 NFIA_NFI_full_dimeric_15_1 SELEX + 56495366 56495380 6.0E-06 ATGGCAGAAAGCCAG 15 MEF2D_MADS_DBD_dimeric_12_1 SELEX + 56495359 56495370 8.0E-06 TCTATAAATGGC 12 PDX1_homeodomain_DBD_dimeric_18_1 SELEX - 56491381 56491398 7.0E-06 GGAATTAGGAATACTTAA 18 EBF1_EBF_full_dimeric_14_1 SELEX + 56494943 56494956 8.0E-06 CCTCCCCTGGGACT 14 TBP_MA0108.2 JASPAR + 56495360 56495374 7.0E-06 CTATAAATGGCAGAA 15 RARG_nuclearreceptor_full_dimeric_17_1 SELEX - 56499255 56499271 4.0E-06 AAAGGCATGTGAGGTCA 17 NFIX_NFI_full_dimeric_15_2 SELEX - 56495366 56495380 2.0E-06 CTGGCTTTCTGCCAT 15 SOX8_HMG_DBD_dimeric_14_1 SELEX - 56492216 56492229 3.0E-06 TTAAAATTCAGTCA 14 POU2F2_POU_DBD_monomeric_11_1 SELEX + 56495181 56495191 9.0E-06 ACATGCAAATC 11 PAX2_PAX_DBD_monomeric_18_1 SELEX + 56492207 56492224 8.0E-06 ATTCAAGCTTGACTGAAT 18 NR2F1_MA0017.1 JASPAR - 56490411 56490424 6.0E-06 TGAACTTTAGCTTT 14 LEF1_HMG_DBD_monomeric_15_1 SELEX + 56495320 56495334 8.0E-06 TAAGTTCAAAAGGAT 15 SP1_MA0079.2 JASPAR + 56495027 56495036 9.0E-06 CCCCTCCTCC 10 FOXI1_MA0042.1 JASPAR - 56490445 56490456 8.0E-06 TTCTGTTTATAT 12 NFATC1_NFAT_full_dimeric_20_1 SELEX + 56494343 56494362 5.0E-06 GGGGGAAAAAGGAATTTCAA 20 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX + 56490418 56490434 8.0E-06 AAGTTCAGCAAAGCACA 17 RARG_nuclearreceptor_DBD_dimeric_17_1 SELEX - 56499255 56499271 9.0E-06 AAAGGCATGTGAGGTCA 17 Hoxd9_homeodomain_DBD_monomeric_9_1 SELEX + 56494782 56494790 9.0E-06 CACATAAAA 9 NFIB_NFI_full_dimeric_15_1 SELEX + 56495366 56495380 7.0E-06 ATGGCAGAAAGCCAG 15 SPDEF_ETS_full_putative-multimer_16_1 SELEX - 56495398 56495413 1.0E-05 TCAGTAAGTACTAAAA 16 LHX6_homeodomain_full_dimeric_12_1 SELEX - 56494952 56494963 7.0E-06 TGATTGCAGTCC 12 RUNX1_MA0002.2 JASPAR + 56494907 56494917 2.0E-06 GCCTGTGGTTT 11 Nobox_MA0125.1 JASPAR + 56494919 56494926 7.0E-06 TAATTGGT 8 ELF5_MA0136.1 JASPAR - 56491325 56491333 9.0E-06 AACTTCCTT 9 V_FREAC7_01_M00293 TRANSFAC + 56490442 56490457 2.0E-06 AAGATATAAACAGAAC 16 V_NFKB_Q6_01_M00774 TRANSFAC - 56493222 56493237 7.0E-06 AAGTTGGAAATTCCAA 16 V_LEF1_04_M02774 TRANSFAC - 56495319 56495335 1.0E-05 AATCCTTTTGAACTTAT 17 V_AML_Q6_M00769 TRANSFAC + 56494905 56494919 1.0E-06 AAGCCTGTGGTTTGT 15 V_EBF_Q6_M00977 TRANSFAC + 56494944 56494954 1.0E-05 CTCCCCTGGGA 11 V_AR_02_M00953 TRANSFAC + 56494911 56494937 5.0E-06 GTGGTTTGTAATTGGTGTTCTAGCTCT 27 V_GATA1_Q6_M02004 TRANSFAC + 56490513 56490527 2.0E-06 TAATCTGATAAGGAA 15 V_NRSF_Q4_M01028 TRANSFAC + 56495027 56495045 4.0E-06 CCCCTCCTCCTGGTGCTCA 19 V_OBOX1_01_M01450 TRANSFAC + 56491297 56491313 1.0E-06 TTCAGGGTATTAACTAG 17 V_NF1A_Q6_M02103 TRANSFAC - 56495365 56495380 3.0E-06 CTGGCTTTCTGCCATT 16 V_HMGIY_Q3_M01010 TRANSFAC - 56494350 56494364 1.0E-05 TTTTGAAATTCCTTT 15 V_ETS_B_M00340 TRANSFAC + 56494899 56494912 8.0E-06 AGCAGGAAGCCTGT 14 V_AR_Q6_01_M01996 TRANSFAC + 56492800 56492814 6.0E-06 TAGCTTTCTGTTCTG 15 V_FOXJ2_02_M00423 TRANSFAC - 56492418 56492431 0.0E+00 ATAATAATACCTTT 14 V_OCT1_Q5_01_M00930 TRANSFAC - 56495182 56495192 2.0E-06 TGATTTGCATG 11 V_NKX25_Q6_M02108 TRANSFAC - 56492224 56492234 1.0E-05 GTCACTTAAAA 11 V_NKX25_Q6_M02108 TRANSFAC + 56492406 56492416 2.0E-06 ATCACTTGAAA 11 V_POU2F3_01_M01476 TRANSFAC + 56495179 56495194 1.0E-05 CCACATGCAAATCAGG 16 V_IRF3_05_M02767 TRANSFAC - 56491329 56491342 2.0E-06 TGGAAAGGAAACTT 14 V_MAF_Q6_M00648 TRANSFAC + 56491322 56491337 0.0E+00 AGGAAGGAAGTTTCCT 16 V_GABPA_04_M02858 TRANSFAC - 56494339 56494354 3.0E-06 CCTTTTTCCCCCCTCC 16 V_SP1_03_M02281 TRANSFAC + 56495027 56495036 9.0E-06 CCCCTCCTCC 10 V_OCT_C_M00210 TRANSFAC - 56495181 56495193 0.0E+00 CTGATTTGCATGT 13 V_NERF_Q2_M00531 TRANSFAC + 56491318 56491335 1.0E-06 GGCCAGGAAGGAAGTTTC 18 V_NKX24_01_M01350 TRANSFAC - 56492222 56492237 9.0E-06 TGTGTCACTTAAAATT 16 V_PU1_Q4_M01172 TRANSFAC - 56495247 56495265 1.0E-06 TCTGTTTATTTCCTCATAC 19 V_TCFAP2E_04_M02926 TRANSFAC + 56492408 56492421 0.0E+00 CACTTGAAAAAAAG 14 V_HOXA13_03_M01430 TRANSFAC - 56491361 56491376 8.0E-06 TGAACTCATAAATCAT 16 V_CDX_Q5_M00991 TRANSFAC - 56491365 56491382 8.0E-06 AAAAGCTGAACTCATAAA 18 V_HOXC13_01_M01317 TRANSFAC - 56491361 56491376 9.0E-06 TGAACTCATAAATCAT 16 V_ZNF219_01_M01122 TRANSFAC + 56495083 56495094 1.0E-06 CTCCCCCCTCCC 12 V_HELIOSA_02_M01004 TRANSFAC + 56490520 56490530 8.0E-06 ATAAGGAACAA 11 V_TCF3_04_M02816 TRANSFAC + 56495319 56495335 3.0E-06 ATAAGTTCAAAAGGATT 17 V_PR_01_M00954 TRANSFAC + 56494911 56494937 1.0E-06 GTGGTTTGTAATTGGTGTTCTAGCTCT 27 V_HNF3G_Q4_M02015 TRANSFAC - 56490526 56490533 7.0E-06 TGTTTGTT 8 V_RUNX1_01_M02257 TRANSFAC + 56494907 56494917 2.0E-06 GCCTGTGGTTT 11 V_COUP_01_M00158 TRANSFAC - 56490411 56490424 6.0E-06 TGAACTTTAGCTTT 14 V_NFAT_Q6_M00302 TRANSFAC - 56492757 56492768 5.0E-06 CACAGGAAAACT 12 V_NKX31_02_M02782 TRANSFAC - 56492434 56492450 8.0E-06 CATAACTACTTAGATAG 17 V_POLY_C_M00212 TRANSFAC + 56495380 56495397 2.0E-06 GAATAAAGTGATCCTGTG 18 V_TATA_01_M00252 TRANSFAC + 56495360 56495374 7.0E-06 CTATAAATGGCAGAA 15 V_NKX61_01_M00424 TRANSFAC + 56494915 56494927 4.0E-06 TTTGTAATTGGTG 13 V_RSRFC4_Q2_M00407 TRANSFAC + 56492790 56492806 6.0E-06 ACTCTGATAATAGCTTT 17 V_NFKB_Q6_M00194 TRANSFAC + 56493221 56493234 3.0E-06 TTTGGAATTTCCAA 14 V_OCT1_05_M00161 TRANSFAC - 56495180 56495193 1.0E-06 CTGATTTGCATGTG 14 V_OBOX2_01_M01364 TRANSFAC + 56491297 56491313 6.0E-06 TTCAGGGTATTAACTAG 17 V_MEF2_03_M00232 TRANSFAC + 56492786 56492807 1.0E-05 GATCACTCTGATAATAGCTTTC 22 V_ISRE_01_M00258 TRANSFAC + 56491329 56491343 4.0E-06 AAGTTTCCTTTCCAA 15 V_ELF5_01_M01197 TRANSFAC + 56495249 56495259 4.0E-06 ATGAGGAAATA 11 V_NFE4_Q5_M02105 TRANSFAC + 56494940 56494951 9.0E-06 CTCCCTCCCCTG 12 V_OCT1_04_M00138 TRANSFAC + 56492422 56492444 3.0E-06 GTATTATTATGTCTATCTAAGTA 23 V_GR_01_M00955 TRANSFAC + 56494911 56494937 3.0E-06 GTGGTTTGTAATTGGTGTTCTAGCTCT 27 V_SP1SP3_Q4_M01219 TRANSFAC + 56495026 56495036 1.0E-05 CCCCCTCCTCC 11 V_MEF2_04_M00233 TRANSFAC + 56495353 56495374 8.0E-06 TGAGTGTCTATAAATGGCAGAA 22 V_PEBP_Q6_M00984 TRANSFAC - 56494905 56494919 8.0E-06 ACAAACCACAGGCTT 15 V_TCF7_03_M02817 TRANSFAC + 56495319 56495335 2.0E-06 ATAAGTTCAAAAGGATT 17 V_OCAB_Q6_M02113 TRANSFAC + 56494368 56494378 7.0E-06 ATCTGCAAACC 11 V_OCAB_Q6_M02113 TRANSFAC + 56495181 56495191 1.0E-06 ACATGCAAATC 11 V_HFH1_01_M00129 TRANSFAC - 56490445 56490456 3.0E-06 TTCTGTTTATAT 12 V_NKX3A_01_M00451 TRANSFAC + 56491379 56491390 3.0E-06 TTTTAAGTATTC 12 V_HB24_01_M01399 TRANSFAC - 56492237 56492251 1.0E-06 GCATATTTGATTACT 15 V_HNF4_DR1_Q3_M00764 TRANSFAC - 56490412 56490424 1.0E-05 TGAACTTTAGCTT 13 V_GATA5_04_M02860 TRANSFAC + 56495199 56495215 8.0E-06 CTCAAAGATATCTAAGC 17 V_HOXA11_01_M01378 TRANSFAC - 56491361 56491376 5.0E-06 TGAACTCATAAATCAT 16 V_SP1_01_M00008 TRANSFAC - 56495019 56495028 7.0E-06 GGGGCAGGGT 10 V_OCT4_02_M01124 TRANSFAC - 56494866 56494880 1.0E-06 ATTGTCTTTCTGAAA 15 V_SRF_03_M01304 TRANSFAC + 56495358 56495370 8.0E-06 GTCTATAAATGGC 13 V_OCT1_B_M00342 TRANSFAC + 56495182 56495191 4.0E-06 CATGCAAATC 10 V_OCT_Q6_M00795 TRANSFAC - 56495182 56495192 2.0E-06 TGATTTGCATG 11 V_PAX8_B_M00328 TRANSFAC - 56491287 56491304 3.0E-06 ACCCTGAAGCATGAATTG 18 V_NKX32_02_M01482 TRANSFAC - 56492434 56492450 3.0E-06 CATAACTACTTAGATAG 17 V_HOXD9_Q2_M01834 TRANSFAC - 56491364 56491373 8.0E-06 ACTCATAAAT 10 V_HOXD9_Q2_M01834 TRANSFAC + 56494781 56494790 1.0E-06 ACACATAAAA 10 V_TFIII_Q6_M00706 TRANSFAC + 56494335 56494343 6.0E-06 AGAGGGAGG 9 V_GR_Q6_02_M01836 TRANSFAC + 56492803 56492815 4.0E-06 CTTTCTGTTCTGC 13 V_ELF1_Q6_M00746 TRANSFAC + 56495247 56495258 2.0E-06 GTATGAGGAAAT 12 V_T3R_01_M00239 TRANSFAC - 56499250 56499265 9.0E-06 ATGTGAGGTCACCAGC 16 V_OBOX2_02_M03064 TRANSFAC + 56491297 56491313 6.0E-06 TTCAGGGTATTAACTAG 17 V_FAC1_01_M00456 TRANSFAC + 56495045 56495058 2.0E-06 ACACACAACACTTA 14 V_TAL1_01_M01591 TRANSFAC - 56494799 56494811 1.0E-06 CTGCCTTCTCTCT 13 V_OCT2_01_M01368 TRANSFAC + 56495179 56495194 9.0E-06 CCACATGCAAATCAGG 16 V_GATA1_04_M00128 TRANSFAC + 56490515 56490527 0.0E+00 ATCTGATAAGGAA 13 V_OCT1_Q6_M00195 TRANSFAC + 56495179 56495193 2.0E-06 CCACATGCAAATCAG 15 V_ZSCAN4_04_M02942 TRANSFAC + 56494777 56494792 8.0E-06 AGAAACACATAAAATC 16 V_NKX3A_02_M01383 TRANSFAC - 56491378 56491394 8.0E-06 TTAGGAATACTTAAAAG 17 V_NKX3A_02_M01383 TRANSFAC - 56492435 56492451 1.0E-05 GCATAACTACTTAGATA 17 V_PLAG1_01_M01778 TRANSFAC + 56494330 56494345 8.0E-06 GAGGCAGAGGGAGGGG 16 V_MYOGNF1_01_M00056 TRANSFAC - 56495364 56495392 4.0E-06 GATCACTTTATTCTGGCTTTCTGCCATTT 29 V_NCX_01_M00484 TRANSFAC + 56494916 56494925 1.0E-05 TTGTAATTGG 10 V_TFIIA_Q6_M00707 TRANSFAC - 56494861 56494872 8.0E-06 TCTGAAAGGAAG 12 V_ZBTB12_03_M02824 TRANSFAC + 56494922 56494938 1.0E-05 TTGGTGTTCTAGCTCTG 17 V_T3RBETA_Q6_01_M02119 TRANSFAC - 56499254 56499270 1.0E-06 AAGGCATGTGAGGTCAC 17 V_BBX_03_M02739 TRANSFAC - 56490455 56490469 1.0E-05 CATTTAACTGAAGTT 15 V_SRF_02_M01257 TRANSFAC + 56495358 56495375 1.0E-05 GTCTATAAATGGCAGAAA 18 V_DMRT2_01_M01147 TRANSFAC - 56491274 56491289 1.0E-05 TTGTGTGCTCCATTTT 16 V_DMRT2_01_M01147 TRANSFAC - 56499292 56499307 7.0E-06 CAGTGTGATCCTTTTA 16 V_SIX6_01_M01345 TRANSFAC + 56492416 56492432 6.0E-06 AAAAAGGTATTATTATG 17 V_VDR_Q3_M00444 TRANSFAC - 56495082 56495096 5.0E-06 GAGGGAGGGGGGAGA 15 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC + 56494910 56494917 1.0E-05 TGTGGTTT 8 V_EKLF_Q5_M01874 TRANSFAC + 56495015 56495024 9.0E-06 CCCCACCCTG 10 V_PR_02_M00957 TRANSFAC + 56494911 56494937 1.0E-06 GTGGTTTGTAATTGGTGTTCTAGCTCT 27 V_HOXC10_01_M01361 TRANSFAC - 56491361 56491376 9.0E-06 TGAACTCATAAATCAT 16 V_SOX15_04_M02903 TRANSFAC + 56492215 56492229 5.0E-06 TTGACTGAATTTTAA 15 V_CTF1_01_M01196 TRANSFAC + 56495367 56495380 2.0E-06 TGGCAGAAAGCCAG 14 V_MEF2A_05_M01301 TRANSFAC + 56492420 56492431 6.0E-06 AGGTATTATTAT 12 V_GATA5_03_M02756 TRANSFAC + 56490513 56490529 0.0E+00 TAATCTGATAAGGAACA 17 V_HMEF2_Q6_M00406 TRANSFAC + 56492287 56492302 3.0E-06 CATTAAAATCAACCTT 16 V_ELF5_04_M02241 TRANSFAC - 56491325 56491333 9.0E-06 AACTTCCTT 9 V_HNF4_01_M00134 TRANSFAC + 56490409 56490427 8.0E-06 AGAAAGCTAAAGTTCAGCA 19 TLX1_NFIC_MA0119.1 JASPAR + 56495367 56495380 2.0E-06 TGGCAGAAAGCCAG 14 V_FOXK1_03_M02752 TRANSFAC + 56490442 56490458 7.0E-06 AAGATATAAACAGAACT 17 V_PAX6_01_M00097 TRANSFAC + 56491286 56491306 8.0E-06 ACAATTCATGCTTCAGGGTAT 21 V_PAX6_01_M00097 TRANSFAC - 56492203 56492223 9.0E-06 TTCAGTCAAGCTTGAATGCTA 21 V_PAX6_01_M00097 TRANSFAC + 56492204 56492224 1.0E-06 AGCATTCAAGCTTGACTGAAT 21 V_NANOG_02_M01247 TRANSFAC - 56499262 56499281 2.0E-06 TGTGAGAAACAAAGGCATGT 20 V_NKX21_01_M01312 TRANSFAC - 56492775 56492790 9.0E-06 TGATCCCCTTGAAAAT 16

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.