Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

PPEF1 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 5475 protein phosphatase, EF-hand calcium binding domain 1 chrX + 18704044 - 18709544 18709044 Transcription Factor Binding Sites   Download all TFBS in the PPEF1 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints Foxk1_forkhead_DBD_putatively-multimeric_11_1 SELEX - 18705164 18705174 3.0E-06 AGGACACAATG 11 Foxj3_forkhead_DBD_putatively-multimeric_11_1 SELEX - 18705165 18705175 4.0E-06 CAGGACACAAT 11 GMEB2_SAND_DBD_dimer-of-dimers_14_1 SELEX + 18709807 18709820 9.0E-06 AACGTAAGCACATA 14 OTX2_homeodomain_DBD_dimeric_15_1 SELEX + 18710849 18710863 6.0E-06 TCTAATCAGCTTACC 15 FOXK1_forkhead_DBD_putatively-multimeric_10_1 SELEX - 18705165 18705174 5.0E-06 AGGACACAAT 10 FOXG1_forkhead_DBD_putatively-multimeric_12_1 SELEX - 18705164 18705175 4.0E-06 CAGGACACAATG 12 NFAT5_NFAT_DBD_dimeric_14_1 SELEX + 18711188 18711201 1.0E-06 TTGGAAAATTACAT 14 Otx1_homeodomain_DBD_dimeric_15_1 SELEX + 18710849 18710863 4.0E-06 TCTAATCAGCTTACC 15 BCL6B_C2H2_DBD_monomeric_17_1 SELEX - 18711218 18711234 8.0E-06 TGCTATCCAGAAATCGC 17 TFAP2C_TFAP_full_dimeric_11_1 SELEX + 18710861 18710871 8.0E-06 ACCCTCAGGCT 11 DUXA_homeodomain_DBD_dimeric_13_1 SELEX + 18710845 18710857 3.0E-06 TGAATCTAATCAG 13 V_NFAT_Q4_01_M00935 TRANSFAC + 18711188 18711197 1.0E-06 TTGGAAAATT 10 V_NFAT3_Q3_M01734 TRANSFAC - 18711189 18711198 7.0E-06 TAATTTTCCA 10 V_ATF3_Q6_01_M01863 TRANSFAC + 18711195 18711205 4.0E-06 ATTACATCAGG 11 V_NFAT_Q6_M00302 TRANSFAC + 18711186 18711197 7.0E-06 TCTTGGAAAATT 12 V_IRX4_01_M01410 TRANSFAC + 18709794 18709810 1.0E-06 GAGATACATGTAAAACG 17 V_IRX3_01_M01318 TRANSFAC - 18709793 18709809 4.0E-06 GTTTTACATGTATCTCA 17 V_IRX3_01_M01318 TRANSFAC + 18709794 18709810 1.0E-06 GAGATACATGTAAAACG 17 V_IRX5_01_M01472 TRANSFAC - 18709793 18709809 7.0E-06 GTTTTACATGTATCTCA 17 V_IRX5_01_M01472 TRANSFAC + 18709794 18709810 1.0E-06 GAGATACATGTAAAACG 17 V_IRX3_02_M01485 TRANSFAC - 18709793 18709809 6.0E-06 GTTTTACATGTATCTCA 17 V_IRX3_02_M01485 TRANSFAC + 18709794 18709810 0.0E+00 GAGATACATGTAAAACG 17 V_OSR2_04_M02889 TRANSFAC - 18711251 18711266 3.0E-06 AGCTGCTACTTACTGG 16 V_IRX2_01_M01405 TRANSFAC - 18709793 18709809 3.0E-06 GTTTTACATGTATCTCA 17 V_IRX2_01_M01405 TRANSFAC + 18709794 18709810 2.0E-06 GAGATACATGTAAAACG 17 V_IRXB3_01_M01377 TRANSFAC + 18709794 18709810 2.0E-06 GAGATACATGTAAAACG 17

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.