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ATRX Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 546 alpha thalassemia/mental retardation syndrome X-linked chrX - 77041219 - 77046719 77041719 Transcription Factor Binding Sites   Download all TFBS in the ATRX promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints MSX2_homeodomain_DBD_dimeric_18_1 SELEX + 77041870 77041887 4.0E-06 CCAATTTAGTCCCAATTG 18 NR2E1_nuclearreceptor_full_monomeric_9_1 SELEX - 77041912 77041920 3.0E-06 TAAAGTCAA 9 YY1_C2H2_full_monomeric_11_1 SELEX + 77041681 77041691 5.0E-06 GCCGCCATTTT 11 NFYA_MA0060.1 JASPAR + 77043692 77043707 0.0E+00 AGCAACCAATCAGAGG 16 NFYA_MA0060.1 JASPAR + 77043755 77043770 0.0E+00 TGCAACCAATCAGAGA 16 ZNF238_C2H2_full_monomeric_13_1 SELEX - 77043741 77043753 8.0E-06 AAAGCAGATGTTT 13 TCF7L1_HMG_full_monomeric_12_1 SELEX + 77041615 77041626 9.0E-06 ACAGCTCAAAGG 12 GBX2_homeodomain_full_monomeric_10_1 SELEX - 77043675 77043684 8.0E-06 ACCAATTAGA 10 IRF1_MA0050.1 JASPAR - 77043772 77043783 3.0E-06 AAAACTGAAAGT 12 POU6F2_POU_DBD_dimeric_16_1 SELEX - 77041966 77041981 1.0E-05 GTTATTACTTCGTTAA 16 NR2E1_nuclearreceptor_full_dimeric_14_1 SELEX + 77043716 77043729 2.0E-06 AAGTTACAAAGTTA 14 SP1_MA0079.2 JASPAR + 77041048 77041057 3.0E-06 CCCCTCCCCC 10 FOXI1_MA0042.1 JASPAR - 77043737 77043748 3.0E-06 AGATGTTTGTAT 12 YY2_C2H2_full_monomeric_11_1 SELEX + 77041681 77041691 1.0E-06 GCCGCCATTTT 11 Msx3_homeodomain_DBD_dimeric_18_1 SELEX + 77041870 77041887 4.0E-06 CCAATTTAGTCCCAATTG 18 EN1_homeodomain_full_dimeric_14_1 SELEX - 77041967 77041980 7.0E-06 TTATTACTTCGTTA 14 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 77043770 77043784 2.0E-06 GAAAACTGAAAGTAT 15 LBX2_homeodomain_DBD_monomeric_10_1 SELEX - 77043675 77043684 3.0E-06 ACCAATTAGA 10 IRF3_IRF_full_trimeric_21_1 SELEX - 77043771 77043791 3.0E-06 GCAGATGGAAAACTGAAAGTA 21 MSX1_homeodomain_DBD_dimeric_18_1 SELEX + 77041870 77041887 3.0E-06 CCAATTTAGTCCCAATTG 18 Nobox_MA0125.1 JASPAR + 77043677 77043684 7.0E-06 TAATTGGT 8 IRF2_MA0051.1 JASPAR - 77043767 77043784 4.0E-06 GAAAACTGAAAGTATCTC 18 V_FOXP1_01_M00987 TRANSFAC - 77042390 77042409 5.0E-06 GTGTGTGTGTGTGTGTGTAT 20 V_MEIS1BHOXA9_02_M00421 TRANSFAC + 77041959 77041972 1.0E-06 TGACATATTAACGA 14 V_MSX3_01_M01341 TRANSFAC - 77043673 77043688 1.0E-06 CACAACCAATTAGATG 16 V_TCFE2A_04_M02927 TRANSFAC - 77043738 77043754 7.0E-06 GAAAGCAGATGTTTGTA 17 V_ATF5_01_M01295 TRANSFAC - 77043800 77043810 2.0E-06 CCTCTTCCTTT 11 TAL1_TCF3_MA0091.1 JASPAR + 77043740 77043751 1.0E-05 CAAACATCTGCT 12 V_NFY_Q6_M00185 TRANSFAC - 77041781 77041791 6.0E-06 TAGCCAATAAG 11 V_NFY_Q6_M00185 TRANSFAC + 77043694 77043704 6.0E-06 CAACCAATCAG 11 V_NFY_Q6_M00185 TRANSFAC + 77043757 77043767 6.0E-06 CAACCAATCAG 11 V_CEBP_Q3_M00770 TRANSFAC + 77041918 77041929 7.0E-06 TTATTTTGAAAA 12 V_BCL6_01_M01183 TRANSFAC - 77041104 77041119 5.0E-06 ATTTTTGCTAATCTTT 16 V_MAFB_03_M02879 TRANSFAC - 77041917 77041931 5.0E-06 CATTTTCAAAATAAA 15 V_FOXJ1_04_M02854 TRANSFAC - 77043827 77043841 1.0E-05 AAGTAACAAAAAGAC 15 V_ISL2_01_M01328 TRANSFAC - 77043673 77043688 7.0E-06 CACAACCAATTAGATG 16 V_IRF_Q6_01_M00972 TRANSFAC - 77041734 77041744 3.0E-06 GAAAGAGAAAG 11 V_IRF_Q6_01_M00972 TRANSFAC - 77043773 77043783 1.0E-06 AAAACTGAAAG 11 V_IRF2_Q6_M01882 TRANSFAC - 77041731 77041746 8.0E-06 CGGAAAGAGAAAGAGG 16 V_IRF2_Q6_M01882 TRANSFAC - 77043770 77043785 1.0E-06 GGAAAACTGAAAGTAT 16 V_RFX4_03_M02789 TRANSFAC - 77041815 77041829 8.0E-06 CGCCTTAGCAACAGG 15 V_HNF3_Q6_01_M01012 TRANSFAC - 77041173 77041190 5.0E-06 TCCTCTGTTTATTCTTTG 18 V_SP1_03_M02281 TRANSFAC + 77041048 77041057 3.0E-06 CCCCTCCCCC 10 V_PU1_Q4_M01172 TRANSFAC - 77043797 77043815 9.0E-06 CAAATCCTCTTCCTTTTCC 19 V_NFY_Q6_01_M00775 TRANSFAC + 77043691 77043703 6.0E-06 CAGCAACCAATCA 13 V_K2B_01_M01348 TRANSFAC - 77043671 77043687 7.0E-06 ACAACCAATTAGATGCT 17 V_CDX_Q5_M00991 TRANSFAC + 77041964 77041981 0.0E+00 TATTAACGAAGTAATAAC 18 V_LHX8_01_M01440 TRANSFAC + 77043672 77043688 8.0E-06 GCATCTAATTGGTTGTG 17 V_REX1_01_M01695 TRANSFAC + 77041747 77041756 7.0E-06 TCAGCCATTG 10 V_NFY_C_M00209 TRANSFAC - 77043692 77043705 0.0E+00 TCTGATTGGTTGCT 14 V_NFY_C_M00209 TRANSFAC - 77043755 77043768 0.0E+00 TCTGATTGGTTGCA 14 V_TAL1_Q6_M00993 TRANSFAC + 77043783 77043792 8.0E-06 TCCATCTGCC 10 V_SOX7_03_M02807 TRANSFAC - 77043823 77043844 8.0E-06 CCTAAGTAACAAAAAGACTACT 22 V_FKLF_Q5_M01837 TRANSFAC - 77041042 77041051 5.0E-06 GGGGTGGGCG 10 V_POLY_C_M00212 TRANSFAC - 77041770 77041787 7.0E-06 CAATAAGACTCTGTGCTT 18 V_IRF2_01_M00063 TRANSFAC - 77043772 77043784 0.0E+00 GAAAACTGAAAGT 13 V_SP1_Q6_M00196 TRANSFAC - 77041046 77041058 8.0E-06 AGGGGGAGGGGTG 13 V_MAZ_Q6_01_M02023 TRANSFAC - 77041044 77041057 1.0E-06 GGGGGAGGGGTGGG 14 V_HNF3_Q6_M00791 TRANSFAC + 77041175 77041187 1.0E-06 AAGAATAAACAGA 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 77041175 77041185 4.0E-06 TGTTTATTCTT 11 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 77043735 77043745 8.0E-06 TGTTTGTATAG 11 V_IRF_Q6_M00772 TRANSFAC + 77041730 77041744 5.0E-06 CCCTCTTTCTCTTTC 15 V_IRF_Q6_M00772 TRANSFAC + 77043769 77043783 0.0E+00 GATACTTTCAGTTTT 15 V_LHX2_01_M01325 TRANSFAC - 77043671 77043687 6.0E-06 ACAACCAATTAGATGCT 17 V_RFXDC2_03_M02790 TRANSFAC - 77041815 77041829 9.0E-06 CGCCTTAGCAACAGG 15 V_ISRE_01_M00258 TRANSFAC + 77043771 77043785 8.0E-06 TACTTTCAGTTTTCC 15 V_YY1_Q6_02_M01035 TRANSFAC + 77041681 77041691 0.0E+00 GCCGCCATTTT 11 V_OCT1_04_M00138 TRANSFAC - 77041950 77041972 7.0E-06 TCGTTAATATGTCAAAGAAAAAA 23 V_REX1_03_M01744 TRANSFAC - 77041680 77041691 1.0E-06 AAAATGGCGGCG 12 V_XFD2_01_M00268 TRANSFAC + 77041176 77041189 3.0E-06 AGAATAAACAGAGG 14 V_BRACH_01_M00150 TRANSFAC + 77043830 77043853 7.0E-06 TTTTTGTTACTTAGGTGTGGAAAG 24 V_TBX5_01_M01019 TRANSFAC + 77043840 77043851 7.0E-06 TTAGGTGTGGAA 12 V_ICSBP_Q6_M00699 TRANSFAC + 77041887 77041898 6.0E-06 GACCTGAAAGTG 12 V_ICSBP_Q6_M00699 TRANSFAC - 77043771 77043782 2.0E-06 AAACTGAAAGTA 12 V_IRF7_01_M00453 TRANSFAC - 77043769 77043786 3.0E-06 TGGAAAACTGAAAGTATC 18 V_TFIII_Q6_M00706 TRANSFAC - 77041727 77041735 6.0E-06 AGAGGGAGG 9 V_HFH8_01_M00294 TRANSFAC - 77043736 77043748 4.0E-06 AGATGTTTGTATA 13 V_YY1_03_M02044 TRANSFAC + 77041681 77041692 0.0E+00 GCCGCCATTTTG 12 V_CAAT_01_M00254 TRANSFAC - 77041782 77041793 7.0E-06 CGTAGCCAATAA 12 V_CAAT_01_M00254 TRANSFAC + 77043692 77043703 5.0E-06 AGCAACCAATCA 12 V_CAAT_01_M00254 TRANSFAC + 77043755 77043766 6.0E-06 TGCAACCAATCA 12 V_ALPHACP1_01_M00687 TRANSFAC + 77043694 77043704 3.0E-06 CAACCAATCAG 11 V_ALPHACP1_01_M00687 TRANSFAC + 77043757 77043767 3.0E-06 CAACCAATCAG 11 V_ISX_01_M01331 TRANSFAC + 77043672 77043687 7.0E-06 GCATCTAATTGGTTGT 16 V_NFYC_Q5_M02107 TRANSFAC + 77043694 77043707 3.0E-06 CAACCAATCAGAGG 14 V_NFYC_Q5_M02107 TRANSFAC + 77043757 77043770 2.0E-06 CAACCAATCAGAGA 14 V_BARHL1_01_M01332 TRANSFAC - 77043673 77043688 1.0E-06 CACAACCAATTAGATG 16 V_FOXL1_02_M02857 TRANSFAC - 77041914 77041929 4.0E-06 TTTTCAAAATAAAGTC 16 V_DELTAEF1_01_M00073 TRANSFAC + 77041325 77041335 2.0E-06 TCTCACCTAAA 11 V_NFY_01_M00287 TRANSFAC + 77043692 77043707 0.0E+00 AGCAACCAATCAGAGG 16 V_NFY_01_M00287 TRANSFAC + 77043755 77043770 0.0E+00 TGCAACCAATCAGAGA 16 V_FPM315_01_M01587 TRANSFAC - 77041723 77041734 7.0E-06 GAGGGAGGACGC 12 V_PLZF_02_M01075 TRANSFAC - 77041904 77041932 5.0E-06 GCATTTTCAAAATAAAGTCAAACTATGTC 29 V_ZFP281_01_M01597 TRANSFAC - 77041048 77041058 3.0E-06 AGGGGGAGGGG 11 V_IRF1_Q6_01_M01881 TRANSFAC + 77041732 77041745 2.0E-06 CTCTTTCTCTTTCC 14 V_IRF1_Q6_01_M01881 TRANSFAC + 77043771 77043784 0.0E+00 TACTTTCAGTTTTC 14 V_ZFP281_04_M02831 TRANSFAC + 77041063 77041077 7.0E-06 TCACCCTCCCCCCGC 15 V_HFH3_01_M00289 TRANSFAC - 77043736 77043748 1.0E-06 AGATGTTTGTATA 13 V_FOXJ2_01_M00422 TRANSFAC + 77041173 77041190 9.0E-06 CAAAGAATAAACAGAGGA 18 V_HOMEZ_01_M01429 TRANSFAC - 77041962 77041978 5.0E-06 ATTACTTCGTTAATATG 17 V_IRF1_01_M00062 TRANSFAC - 77043772 77043784 0.0E+00 GAAAACTGAAAGT 13 V_BARHL2_01_M01446 TRANSFAC - 77043673 77043688 3.0E-06 CACAACCAATTAGATG 16 V_LHX4_01_M01421 TRANSFAC + 77043672 77043688 2.0E-06 GCATCTAATTGGTTGTG 17 V_NFYA_Q5_M02106 TRANSFAC + 77043694 77043707 0.0E+00 CAACCAATCAGAGG 14 V_NFYA_Q5_M02106 TRANSFAC + 77043757 77043770 0.0E+00 CAACCAATCAGAGA 14 V_SP1_Q4_01_M00932 TRANSFAC - 77041046 77041058 8.0E-06 AGGGGGAGGGGTG 13 V_GBX1_01_M01371 TRANSFAC + 77043671 77043687 3.0E-06 AGCATCTAATTGGTTGT 17 V_DMRT5_01_M01150 TRANSFAC + 77043831 77043845 4.0E-06 TTTTGTTACTTAGGT 15 V_CEBPA_Q6_M01866 TRANSFAC + 77041918 77041930 9.0E-06 TTATTTTGAAAAT 13 V_NANOG_02_M01247 TRANSFAC - 77041950 77041969 3.0E-06 TTAATATGTCAAAGAAAAAA 20 V_T3RALPHA_Q6_M01724 TRANSFAC - 77041885 77041895 5.0E-06 TTTCAGGTCAA 11 V_OCT4_01_M01125 TRANSFAC + 77041916 77041930 6.0E-06 CTTTATTTTGAAAAT 15 V_TCF11_01_M00285 TRANSFAC - 77041110 77041122 6.0E-06 GTCATTTTTGCTA 13

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.