Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

MTRF1L Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 54516 mitochondrial translational release factor 1-like chr6 - 153323425 - 153328925 153323925 Transcription Factor Binding Sites   Download all TFBS in the MTRF1L promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints POU4F2_POU_full_monomeric_16_1 SELEX - 153324508 153324523 5.0E-06 GTGAATAATAAAGTCC 16 HOXD12_homeodomain_DBD_monomeric_9_1 SELEX - 153324323 153324331 5.0E-06 ATAATAAAA 9 Hoxc10_homeodomain_DBD_monomeric_10_2 SELEX - 153324322 153324331 6.0E-06 ATAATAAAAC 10 FLI1_ETS_full_monomeric_10_1 SELEX + 153323852 153323861 5.0E-06 ACCGGAAGTT 10 ETV5_ETS_DBD_monomeric_10_1 SELEX + 153323852 153323861 3.0E-06 ACCGGAAGTT 10 ERG_ETS_full_monomeric_10_1 SELEX + 153323852 153323861 4.0E-06 ACCGGAAGTT 10 ETV3_ETS_DBD_monomeric_10_1 SELEX + 153323852 153323861 5.0E-06 ACCGGAAGTT 10 ELF4_ETS_full_monomeric_12_1 SELEX + 153323850 153323861 5.0E-06 GAACCGGAAGTT 12 FEV_ETS_DBD_monomeric_10_1 SELEX + 153323852 153323861 3.0E-06 ACCGGAAGTT 10 Mafb_bZIP_DBD_monomeric_12_1 SELEX - 153324556 153324567 7.0E-06 AAAAAGCTGACG 12 ETV1_ETS_DBD_monomeric_10_1 SELEX + 153323852 153323861 3.0E-06 ACCGGAAGTT 10 RARA_nuclearreceptor_DBD_dimeric_18_2 SELEX + 153324017 153324034 3.0E-06 GAGGCCAAAAGTTGAGGG 18 BARHL2_homeodomain_full_dimeric_16_1 SELEX - 153324539 153324554 1.0E-05 TAAGTGGGACTAAGTG 16 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX - 153324539 153324554 8.0E-06 TAAGTGGGACTAAGTG 16 ETV2_ETS_DBD_monomeric_11_1 SELEX + 153323851 153323861 3.0E-06 AACCGGAAGTT 11 HOXC12_homeodomain_DBD_monomeric_9_1 SELEX - 153324323 153324331 3.0E-06 ATAATAAAA 9 GRHL1_CP2_DBD_dimer-of-dimers_17_1 SELEX - 153323851 153323867 7.0E-06 GTCCGGAACTTCCGGTT 17 E2F8_E2F_DBD_dimeric_12_1 SELEX - 153324132 153324143 1.0E-06 TTTCCGGCCAAA 12 ETS1_ETS_full_monomeric_10_1 SELEX + 153323852 153323861 9.0E-06 ACCGGAAGTT 10 Pou2f2_POU_DBD_dimeric_14_1 SELEX + 153324446 153324459 4.0E-06 AATGAATTTGCACA 14 ETV4_ETS_DBD_monomeric_10_1 SELEX + 153323852 153323861 4.0E-06 ACCGGAAGTT 10 ELK4_ETS_DBD_monomeric_10_1 SELEX + 153323852 153323861 4.0E-06 ACCGGAAGTT 10 ELK4_MA0076.1 JASPAR + 153323852 153323860 4.0E-06 ACCGGAAGT 9 MAFK_bZIP_full_dimeric_15_1 SELEX - 153324301 153324315 6.0E-06 TTGAAGACTCAGCGG 15 HOXA13_homeodomain_full_monomeric_10_1 SELEX - 153324322 153324331 8.0E-06 ATAATAAAAC 10 ELK1_MA0028.1 JASPAR + 153323850 153323859 5.0E-06 GAACCGGAAG 10 ERF_ETS_DBD_monomeric_10_1 SELEX + 153323852 153323861 4.0E-06 ACCGGAAGTT 10 ELK1_ETS_full_monomeric_10_1 SELEX + 153323852 153323861 3.0E-06 ACCGGAAGTT 10 EHF_ETS_full_monomeric_12_1 SELEX + 153323850 153323861 9.0E-06 GAACCGGAAGTT 12 Pou5f1_MA0142.1 JASPAR - 153323339 153323353 6.0E-06 CTTTTACATGCTTAT 15 ELF5_ETS_full_monomeric_11_1 SELEX + 153323851 153323861 2.0E-06 AACCGGAAGTT 11 GABPA_ETS_full_monomeric_10_1 SELEX + 153323852 153323861 3.0E-06 ACCGGAAGTT 10 Elk3_ETS_DBD_monomeric_10_1 SELEX + 153323852 153323861 3.0E-06 ACCGGAAGTT 10 CPEB1_RRM_full_monomeric_8_1 SELEX + 153323444 153323451 4.0E-06 AATAAAAA 8 ETV6_ETS_full_dimeric_15_1 SELEX + 153323847 153323861 0.0E+00 CCGGAACCGGAAGTT 15 RARG_nuclearreceptor_full_dimeric_16_1 SELEX + 153324017 153324032 5.0E-06 GAGGCCAAAAGTTGAG 16 CDX2_homeodomain_DBD_monomeric_9_1 SELEX - 153324323 153324331 3.0E-06 ATAATAAAA 9 Foxj3_forkhead_DBD_dimeric_13_1 SELEX - 153324367 153324379 8.0E-06 AGAAACATAAGCA 13 Foxj3_forkhead_DBD_dimeric_13_1 SELEX + 153324769 153324781 7.0E-06 ATAAACACAACCA 13 CDX1_homeodomain_DBD_monomeric_9_1 SELEX - 153324323 153324331 3.0E-06 ATAATAAAA 9 POU4F1_POU_DBD_monomeric_14_1 SELEX - 153324510 153324523 8.0E-06 GTGAATAATAAAGT 14 V_ERG_03_M02062 TRANSFAC + 153323852 153323861 3.0E-06 ACCGGAAGTT 10 V_ERM_01_M01992 TRANSFAC + 153323852 153323861 2.0E-06 ACCGGAAGTT 10 V_ELK1_04_M01165 TRANSFAC + 153323851 153323861 2.0E-06 AACCGGAAGTT 11 V_HSF1_Q6_M01023 TRANSFAC - 153324004 153324020 6.0E-06 CCTCCGGGAAGTTCGCA 17 V_GABPA_02_M02074 TRANSFAC + 153323852 153323861 1.0E-05 ACCGGAAGTT 10 V_CETS1_01_M01986 TRANSFAC + 153323852 153323861 5.0E-06 ACCGGAAGTT 10 V_POU5F1_02_M02245 TRANSFAC - 153323339 153323353 6.0E-06 CTTTTACATGCTTAT 15 V_HOXA13_02_M01297 TRANSFAC + 153323443 153323451 4.0E-06 AAATAAAAA 9 V_AR_Q6_01_M01996 TRANSFAC - 153321129 153321143 8.0E-06 GTGCTTCCTGTACTT 15 V_ETV3_01_M01990 TRANSFAC + 153323852 153323861 6.0E-06 ACCGGAAGTT 10 V_NKX25_Q6_M02108 TRANSFAC - 153323455 153323465 3.0E-06 CTCACTTGCAG 11 V_GKLF_02_M01588 TRANSFAC + 153323924 153323935 5.0E-06 GCCCCGCCCAGC 12 V_NERF_Q2_M00531 TRANSFAC + 153321131 153321148 4.0E-06 GTACAGGAAGCACTGCTG 18 V_AIRE_02_M01000 TRANSFAC + 153324357 153324381 0.0E+00 CCTTTTTTCCTGCTTATGTTTCTCT 25 V_BRN2_01_M00145 TRANSFAC + 153323435 153323450 5.0E-06 CTGATCCAAAATAAAA 16 V_CDX_Q5_M00991 TRANSFAC + 153323334 153323351 5.0E-06 AACTAATAAGCATGTAAA 18 V_CDX_Q5_M00991 TRANSFAC + 153324553 153324570 7.0E-06 TATCGTCAGCTTTTTAAA 18 V_CETS2_02_M02064 TRANSFAC + 153323852 153323861 4.0E-06 ACCGGAAGTT 10 V_PEA3_01_M01991 TRANSFAC + 153323852 153323861 4.0E-06 ACCGGAAGTT 10 V_CETS1P54_02_M00074 TRANSFAC + 153323850 153323862 5.0E-06 GAACCGGAAGTTC 13 V_NRSE_B_M00325 TRANSFAC - 153324393 153324413 7.0E-06 CTTATTACCACGAACCTCACC 21 V_ELF4_04_M02850 TRANSFAC - 153324320 153324336 7.0E-06 TGTCCATAATAAAACTC 17 V_HMBOX1_01_M01456 TRANSFAC - 153323064 153323080 9.0E-06 GAAAAATAGTTAAGAAC 17 V_FLI1_01_M02038 TRANSFAC + 153323852 153323861 7.0E-06 ACCGGAAGTT 10 V_ELK1_06_M02059 TRANSFAC + 153323852 153323861 2.0E-06 ACCGGAAGTT 10 V_ELK1_05_M01981 TRANSFAC + 153323852 153323861 2.0E-06 ACCGGAAGTT 10 V_SAP1A_02_M01983 TRANSFAC + 153323852 153323861 3.0E-06 ACCGGAAGTT 10 V_FLI1_02_M02073 TRANSFAC + 153323852 153323861 2.0E-06 ACCGGAAGTT 10 V_PET1_02_M02072 TRANSFAC + 153323852 153323861 4.0E-06 ACCGGAAGTT 10 V_NKX31_02_M02782 TRANSFAC - 153324416 153324432 7.0E-06 ATAATACACTTATCAAG 17 V_ERF_01_M01984 TRANSFAC + 153323852 153323861 3.0E-06 ACCGGAAGTT 10 V_ER81_02_M02065 TRANSFAC + 153323852 153323861 5.0E-06 ACCGGAAGTT 10 V_IRF3_Q3_M01279 TRANSFAC + 153324532 153324544 2.0E-06 TCATTTTCACTTA 13 V_MAZ_Q6_01_M02023 TRANSFAC + 153324053 153324066 9.0E-06 TGGGGAGGGGCGGG 14 V_ERG_01_M01752 TRANSFAC + 153323852 153323860 4.0E-06 ACCGGAAGT 9 V_GABPA_01_M02039 TRANSFAC + 153323852 153323861 7.0E-06 ACCGGAAGTT 10 V_CETS2_01_M01989 TRANSFAC + 153323852 153323861 5.0E-06 ACCGGAAGTT 10 V_EGR1_04_M02848 TRANSFAC - 153324542 153324557 9.0E-06 CGATAAGTGGGACTAA 16 V_TATA_C_M00216 TRANSFAC - 153323947 153323956 6.0E-06 CCTTTAAAAA 10 V_TATA_C_M00216 TRANSFAC - 153324563 153324572 3.0E-06 TCTTTAAAAA 10 V_GADP_01_M01258 TRANSFAC - 153323850 153323861 5.0E-06 AACTTCCGGTTC 12 V_PET1_01_M02037 TRANSFAC + 153323852 153323861 4.0E-06 ACCGGAAGTT 10 V_HBP1_03_M02762 TRANSFAC + 153324440 153324455 2.0E-06 CCACTGAATGAATTTG 16 V_ELK1_02_M00025 TRANSFAC + 153323849 153323862 4.0E-06 GGAACCGGAAGTTC 14 V_PEA3_02_M02066 TRANSFAC + 153323852 153323861 4.0E-06 ACCGGAAGTT 10 V_ERF_02_M02061 TRANSFAC + 153323852 153323861 8.0E-06 ACCGGAAGTT 10 V_ER71_01_M01988 TRANSFAC + 153323852 153323861 7.0E-06 ACCGGAAGTT 10 V_ELK1_01_M00007 TRANSFAC - 153323976 153323991 6.0E-06 TTGGCAGGAAGTTCCC 16 V_NKX32_02_M01482 TRANSFAC - 153324416 153324432 8.0E-06 ATAATACACTTATCAAG 17 V_NET_01_M01982 TRANSFAC + 153323852 153323861 6.0E-06 ACCGGAAGTT 10 V_ER81_01_M01987 TRANSFAC + 153323852 153323861 6.0E-06 ACCGGAAGTT 10 V_SOX15_03_M02799 TRANSFAC - 153324509 153324525 9.0E-06 AGGTGAATAATAAAGTC 17 V_ERM_02_M02069 TRANSFAC + 153323852 153323861 2.0E-06 ACCGGAAGTT 10 V_GABPBETA_Q3_M01876 TRANSFAC + 153323852 153323862 7.0E-06 ACCGGAAGTTC 11 V_AP4_01_M00005 TRANSFAC - 153324294 153324311 2.0E-06 AGACTCAGCGGCAGCCCT 18 V_EHF_06_M02745 TRANSFAC + 153323848 153323862 5.0E-06 CGGAACCGGAAGTTC 15 V_TAL1_01_M01591 TRANSFAC - 153323899 153323911 6.0E-06 CACCCTTATCTCC 13 V_TCF4_Q5_M00671 TRANSFAC - 153324502 153324509 1.0E-05 CCTTTGAA 8 V_SAP1A_03_M02058 TRANSFAC + 153323852 153323861 4.0E-06 ACCGGAAGTT 10 V_IRF1_Q6_01_M01881 TRANSFAC + 153324533 153324546 8.0E-06 CATTTTCACTTAGT 14 V_CETS1_02_M02063 TRANSFAC + 153323852 153323861 2.0E-06 ACCGGAAGTT 10 V_NET_02_M02060 TRANSFAC + 153323852 153323861 2.0E-06 ACCGGAAGTT 10 V_FOXO1_01_M00473 TRANSFAC - 153324341 153324350 7.0E-06 AATAAACACA 10 V_ERG_02_M01985 TRANSFAC + 153323852 153323861 9.0E-06 ACCGGAAGTT 10 V_SOX15_04_M02903 TRANSFAC + 153324443 153324457 9.0E-06 CTGAATGAATTTGCA 15 V_SRY_05_M02917 TRANSFAC + 153324450 153324466 4.0E-06 AATTTGCACAATAGACG 17 V_HOXA10_01_M01464 TRANSFAC - 153324319 153324334 7.0E-06 TCCATAATAAAACTCG 16 V_SOX5_07_M02909 TRANSFAC - 153323065 153323081 7.0E-06 AGAAAAATAGTTAAGAA 17 V_GATA1_02_M00126 TRANSFAC + 153323897 153323910 1.0E-06 TTGGAGATAAGGGT 14 V_GATA6_04_M02757 TRANSFAC + 153323896 153323912 8.0E-06 TTTGGAGATAAGGGTGA 17 V_TCF11MAFG_01_M00284 TRANSFAC - 153324476 153324497 7.0E-06 AGTAAATGACGCGGCAGATGAA 22 V_ELK1_03_M01163 TRANSFAC + 153323851 153323861 1.0E-06 AACCGGAAGTT 11 V_TCF3_05_M02920 TRANSFAC + 153323437 153323451 9.0E-06 GATCCAAAATAAAAA 15 V_TCF3_05_M02920 TRANSFAC + 153323438 153323452 7.0E-06 ATCCAAAATAAAAAC 15 V_ER71_02_M02067 TRANSFAC + 153323852 153323861 5.0E-06 ACCGGAAGTT 10 V_AR_Q2_M00447 TRANSFAC - 153321130 153321144 3.0E-06 AGTGCTTCCTGTACT 15 V_CEBPA_Q6_M01866 TRANSFAC - 153324451 153324463 6.0E-06 CTATTGTGCAAAT 13 V_OCT4_01_M01125 TRANSFAC - 153323339 153323353 1.0E-05 CTTTTACATGCTTAT 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.