Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

TMX3 Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 54495 thioredoxin-related transmembrane protein 3 chr18 - 66381853 - 66387353 66382353 Transcription Factor Binding Sites   Download all TFBS in the TMX3 promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints ESRRA_nuclearreceptor_DBD_dimeric_19_1 SELEX - 66381741 66381759 1.0E-06 CGAGGACAGATCAGGGTCA 19 BARX1_homeodomain_DBD_dimeric_17_1 SELEX - 66381621 66381637 8.0E-06 CACTTAACAACCTTTTA 17 KLF16_C2H2_DBD_monomeric_11_1 SELEX - 66382348 66382358 1.0E-05 GCCCCGCCCCC 11 SOX9_HMG_full_dimeric_16_1 SELEX - 66382721 66382736 3.0E-06 AGCAATCCGCAGTCTT 16 Zfp423_MA0116.1 JASPAR + 66381982 66381996 1.0E-06 GGACCCCAAGGTGTC 15 SOX8_HMG_DBD_dimeric_16_1 SELEX - 66382746 66382761 9.0E-06 AAAAATACGGAGTGTC 16 STAT1_MA0137.2 JASPAR - 66382553 66382567 7.0E-06 ACCTTCCCGGAAACG 15 STAT1_MA0137.2 JASPAR + 66382696 66382710 9.0E-06 AAATTCCTGGAAAGA 15 STAT1_MA0137.2 JASPAR - 66382696 66382710 2.0E-06 TCTTTCCAGGAATTT 15 E2F2_E2F_DBD_dimeric_16_1 SELEX - 66382706 66382721 3.0E-06 TAATGCGCGCCTCTTT 16 BARHL2_homeodomain_full_dimeric_16_1 SELEX + 66381785 66381800 3.0E-06 TAAAAATCCTTAAACG 16 RARG_nuclearreceptor_full_dimeric_18_1 SELEX - 66381741 66381758 5.0E-06 GAGGACAGATCAGGGTCA 18 Barhl1_homeodomain_DBD_dimeric_16_1 SELEX + 66381785 66381800 2.0E-06 TAAAAATCCTTAAACG 16 ESRRG_nuclearreceptor_full_dimeric_18_1 SELEX - 66381741 66381758 4.0E-06 GAGGACAGATCAGGGTCA 18 SP1_MA0079.2 JASPAR - 66382348 66382357 7.0E-06 CCCCGCCCCC 10 HIC2_C2H2_DBD_monomeric_9_1 SELEX - 66382056 66382064 1.0E-05 ATGCCCACC 9 NFAT5_NFAT_DBD_dimeric_14_1 SELEX - 66382752 66382765 7.0E-06 TTGGAAAAATACGG 14 RARA_nuclearreceptor_full_dimeric_17_1 SELEX - 66381741 66381757 5.0E-06 AGGACAGATCAGGGTCA 17 SP4_C2H2_full_monomeric_17_1 SELEX - 66382345 66382361 1.0E-06 GTAGCCCCGCCCCCGTA 17 BCL6B_C2H2_DBD_monomeric_17_1 SELEX - 66382695 66382711 2.0E-06 CTCTTTCCAGGAATTTG 17 Stat3_MA0144.1 JASPAR + 66382556 66382565 3.0E-06 TTCCGGGAAG 10 Stat3_MA0144.1 JASPAR + 66382699 66382708 4.0E-06 TTCCTGGAAA 10 SPDEF_ETS_full_putative-multimer_16_1 SELEX - 66382642 66382657 8.0E-06 GGAGTAACAAGTAAAT 16 SOX21_HMG_DBD_dimeric_16_1 SELEX - 66382721 66382736 7.0E-06 AGCAATCCGCAGTCTT 16 SOX21_HMG_DBD_dimeric_16_1 SELEX - 66382746 66382761 9.0E-06 AAAAATACGGAGTGTC 16 POU2F1_POU_DBD_monomeric_12_1 SELEX - 66382792 66382803 1.0E-05 ATTATGCAAACA 12 RORA_nuclearreceptor_DBD_dimeric_20_1 SELEX - 66381741 66381760 1.0E-06 TCGAGGACAGATCAGGGTCA 20 MAFK_bZIP_full_monomeric_12_1 SELEX + 66382581 66382592 6.0E-06 AGTTATGCTGAG 12 NRF1_NRF_full_dimeric_12_1 SELEX - 66382431 66382442 1.0E-05 TGCGCAGGCGCT 12 IRF2_MA0051.1 JASPAR + 66382295 66382312 6.0E-06 GGAAAGGGAAACGGAGCC 18 Zfx_MA0146.1 JASPAR - 66382079 66382092 7.0E-06 TGGGGCGAGGCCTG 14 V_NFAT_Q4_01_M00935 TRANSFAC - 66382756 66382765 7.0E-06 TTGGAAAAAT 10 V_FOXP1_01_M00987 TRANSFAC - 66381914 66381933 1.0E-06 TGCCTTGTGTTTGTGTTTTT 20 V_STAT3_01_M00225 TRANSFAC + 66382550 66382570 2.0E-06 GCGCGTTTCCGGGAAGGTGAA 21 V_STAT3_01_M00225 TRANSFAC - 66382550 66382570 6.0E-06 TTCACCTTCCCGGAAACGCGC 21 V_AREB6_03_M00414 TRANSFAC + 66382668 66382679 1.0E-05 GTGCACCTGTGG 12 V_BCL6B_03_M02740 TRANSFAC - 66382695 66382710 0.0E+00 TCTTTCCAGGAATTTG 16 V_ZFX_01_M01593 TRANSFAC + 66382076 66382091 1.0E-06 CCGCAGGCCTCGCCCC 16 V_SP1_Q6_01_M00931 TRANSFAC + 66382349 66382358 4.0E-06 GGGGCGGGGC 10 V_IRF_Q6_01_M00972 TRANSFAC + 66382296 66382306 1.0E-05 GAAAGGGAAAC 11 V_IRF2_Q6_M01882 TRANSFAC + 66382294 66382309 4.0E-06 CGGAAAGGGAAACGGA 16 V_STAT5B_01_M00459 TRANSFAC + 66382696 66382710 5.0E-06 AAATTCCTGGAAAGA 15 V_STAT5B_01_M00459 TRANSFAC - 66382696 66382710 1.0E-06 TCTTTCCAGGAATTT 15 V_SP1_03_M02281 TRANSFAC - 66382348 66382357 7.0E-06 CCCCGCCCCC 10 V_CACCCBINDINGFACTOR_Q6_M00721 TRANSFAC + 66382584 66382599 4.0E-06 TATGCTGAGGGTGAGG 16 V_PAX3_B_M00327 TRANSFAC - 66381791 66381811 8.0E-06 GAGTCTTGTCACGTTTAAGGA 21 V_BCL6_02_M01185 TRANSFAC - 66382698 66382711 6.0E-06 CTCTTTCCAGGAAT 14 V_WT1_Q6_01_M02036 TRANSFAC - 66382026 66382035 4.0E-06 CGCCCCCGCC 10 V_PAX5_02_M00144 TRANSFAC + 66381783 66381810 6.0E-06 GGTAAAAATCCTTAAACGTGACAAGACT 28 V_ETV7_01_M02071 TRANSFAC - 66382553 66382562 1.0E-05 CCCGGAAACG 10 V_HELIOSA_02_M01004 TRANSFAC - 66382757 66382767 2.0E-06 TTTTGGAAAAA 11 V_NFAT_Q6_M00302 TRANSFAC - 66382756 66382767 4.0E-06 TTTTGGAAAAAT 12 V_STAT1_01_M00224 TRANSFAC - 66382550 66382570 3.0E-06 TTCACCTTCCCGGAAACGCGC 21 V_KROX_Q6_M00982 TRANSFAC - 66382024 66382037 2.0E-06 GCCGCCCCCGCCGC 14 V_SP1_Q6_M00196 TRANSFAC + 66382347 66382359 2.0E-06 CGGGGGCGGGGCT 13 V_IRF3_Q3_M01279 TRANSFAC - 66382297 66382309 1.0E-06 TCCGTTTCCCTTT 13 V_AP2BETA_Q3_M01858 TRANSFAC - 66382074 66382089 8.0E-06 GGCGAGGCCTGCGGGG 16 V_EGR1_Q6_M01873 TRANSFAC + 66382027 66382036 4.0E-06 GCGGGGGCGG 10 V_IRF_Q6_M00772 TRANSFAC - 66382296 66382310 6.0E-06 CTCCGTTTCCCTTTC 15 V_STAT5A_02_M00460 TRANSFAC + 66382556 66382579 6.0E-06 TTCCGGGAAGGTGAATACCGGTGA 24 V_STAT3_03_M01595 TRANSFAC + 66382554 66382569 4.0E-06 GTTTCCGGGAAGGTGA 16 V_BLIMP1_Q6_M01066 TRANSFAC + 66382294 66382309 0.0E+00 CGGAAAGGGAAACGGA 16 V_SP4_Q5_M01273 TRANSFAC - 66382348 66382358 1.0E-06 GCCCCGCCCCC 11 V_HBP1_04_M02866 TRANSFAC - 66382794 66382810 6.0E-06 ATGTCCCATTATGCAAA 17 V_TCFE2A_03_M02823 TRANSFAC - 66382665 66382681 3.0E-06 ACCCACAGGTGCACTCA 17 V_ZFP206_01_M01742 TRANSFAC - 66382432 66382442 1.0E-06 TGCGCAGGCGC 11 V_RBPJK_01_M01112 TRANSFAC + 66382494 66382504 2.0E-06 AGCGTGGGAAC 11 V_E2_Q6_01_M00928 TRANSFAC - 66382529 66382544 9.0E-06 TGAACCAGCACCGTTT 16 V_VDR_Q6_M00961 TRANSFAC - 66382538 66382549 6.0E-06 CCCAGTGAACCA 12 V_STAT_01_M00223 TRANSFAC - 66382556 66382564 7.0E-06 TTCCCGGAA 9 V_STAT5A_01_M00457 TRANSFAC - 66382696 66382710 3.0E-06 TCTTTCCAGGAATTT 15 V_SOX14_04_M02901 TRANSFAC + 66382050 66382066 3.0E-06 GGAATGGGTGGGCATCT 17 V_VMAF_01_M00035 TRANSFAC + 66382238 66382256 0.0E+00 AGAAGCTGACTGTGCAAAA 19 V_SP1_Q2_01_M00933 TRANSFAC - 66382348 66382357 4.0E-06 CCCCGCCCCC 10 V_SP1_Q4_01_M00932 TRANSFAC + 66382347 66382359 2.0E-06 CGGGGGCGGGGCT 13 V_STAT1_Q6_M01823 TRANSFAC + 66382556 66382565 8.0E-06 TTCCGGGAAG 10 V_STAT1_05_M01260 TRANSFAC + 66382553 66382574 8.0E-06 CGTTTCCGGGAAGGTGAATACC 22 V_STAT1_05_M01260 TRANSFAC + 66382696 66382717 5.0E-06 AAATTCCTGGAAAGAGGCGCGC 22

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.