Search TFs or Genes

Construction and Validation

Optimal Promoter Size

Download

Citation and Contact

ATAD2B Entrez Description Chrom. Strand Promoter (Start - Stop) TSS 54454 ATPase family, AAA domain containing 2B chr2 - 24149436 - 24154936 24149936 Transcription Factor Binding Sites   Download all TFBS in the ATAD2B promoter   Motif Source Strand Start Stop PValue Match Sequence Overlap w/ Footprints HOXD12_homeodomain_DBD_monomeric_9_1 SELEX + 24150445 24150453 6.0E-06 GTGATAAAA 9 NF-kappaB_MA0061.1 JASPAR - 24150366 24150375 9.0E-06 GGGGATTCCC 10 SOX4_HMG_DBD_dimeric_16_1 SELEX - 24148723 24148738 7.0E-06 AAACAAGTGGAATGTT 16 POU2F1_POU_DBD_dimeric_14_1 SELEX + 24150739 24150752 8.0E-06 AATTCATATGAAAA 14 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX + 24150437 24150448 1.0E-06 TGACAGCTGTGA 12 PKNOX1_MEIS_DBD_dimeric_12_1 SELEX - 24150437 24150448 1.0E-06 TCACAGCTGTCA 12 KLF16_C2H2_DBD_monomeric_11_1 SELEX + 24150081 24150091 1.0E-05 GCCCCGCCCCC 11 FOXL1_forkhead_full_dimeric_13_1 SELEX + 24147521 24147533 7.0E-06 GAAAAACAAATAT 13 SOX8_HMG_full_dimeric_15_1 SELEX - 24148723 24148737 9.0E-06 AACAAGTGGAATGTT 15 NFKB1_MA0105.1 JASPAR - 24150365 24150375 9.0E-06 GGGGATTCCCA 11 Pknox2_MEIS_DBD_dimeric_12_1 SELEX + 24150437 24150448 2.0E-06 TGACAGCTGTGA 12 Pknox2_MEIS_DBD_dimeric_12_1 SELEX - 24150437 24150448 4.0E-06 TCACAGCTGTCA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX + 24150437 24150448 2.0E-06 TGACAGCTGTGA 12 TGIF2_MEIS_DBD_dimeric_12_1 SELEX - 24150437 24150448 4.0E-06 TCACAGCTGTCA 12 Pax4_MA0068.1 JASPAR + 24149046 24149075 1.0E-06 GAAAACTTTCACTTCTCCAACCCTTCCACC 30 Pax4_MA0068.1 JASPAR + 24150656 24150685 1.0E-05 GAAGAATTAAGAATACAAAAAGCTGAACCC 30 Pax4_MA0068.1 JASPAR + 24150721 24150750 3.0E-06 AAAAAAATTAAGCCACACAATTCATATGAA 30 Spz1_MA0111.1 JASPAR - 24149417 24149427 3.0E-06 AGGGTAAGAGC 11 TCF7L1_HMG_full_monomeric_12_1 SELEX - 24148829 24148840 5.0E-06 AGAGATCAAACA 12 TEAD1_TEA_full_monomeric_10_1 SELEX + 24148723 24148732 9.0E-06 AACATTCCAC 10 Tcfcp2l1_MA0145.1 JASPAR - 24150291 24150304 7.0E-06 CCTGCTCCATCCAG 14 Meis3_MEIS_DBD_dimeric_12_1 SELEX + 24150437 24150448 0.0E+00 TGACAGCTGTGA 12 Meis3_MEIS_DBD_dimeric_12_1 SELEX - 24150437 24150448 1.0E-06 TCACAGCTGTCA 12 NFATC1_NFAT_full_dimeric_14_1 SELEX + 24148022 24148035 3.0E-06 GTTTCCACCGAAAG 14 NFATC1_NFAT_full_dimeric_14_1 SELEX - 24148022 24148035 6.0E-06 CTTTCGGTGGAAAC 14 Foxc1_forkhead_DBD_dimeric_11_1 SELEX + 24147522 24147532 4.0E-06 AAAAACAAATA 11 SP1_MA0079.2 JASPAR + 24150082 24150091 7.0E-06 CCCCGCCCCC 10 FOXI1_MA0042.1 JASPAR - 24147524 24147535 3.0E-06 AAATATTTGTTT 12 YY2_C2H2_full_monomeric_11_1 SELEX + 24149913 24149923 8.0E-06 GCCGCCATTTC 11 FOXC2_forkhead_DBD_dimeric_11_1 SELEX + 24147522 24147532 3.0E-06 AAAAACAAATA 11 Foxd3_MA0041.1 JASPAR - 24147524 24147535 0.0E+00 AAATATTTGTTT 12 Foxd3_MA0041.1 JASPAR - 24150451 24150462 7.0E-06 GAATTTTTTTTT 12 TEAD3_TEA_DBD_monomeric_8_1 SELEX + 24148724 24148731 1.0E-05 ACATTCCA 8 PRDM1_C2H2_full_monomeric-or-dimeric_15_1 SELEX - 24149048 24149062 1.0E-06 GAGAAGTGAAAGTTT 15 TGIF2LX_MEIS_full_dimeric_12_1 SELEX + 24150437 24150448 2.0E-06 TGACAGCTGTGA 12 TGIF2LX_MEIS_full_dimeric_12_1 SELEX - 24150437 24150448 2.0E-06 TCACAGCTGTCA 12 Meis2_MEIS_DBD_dimeric_12_1 SELEX + 24150437 24150448 0.0E+00 TGACAGCTGTGA 12 Meis2_MEIS_DBD_dimeric_12_1 SELEX - 24150437 24150448 3.0E-06 TCACAGCTGTCA 12 MEIS2_MEIS_DBD_dimeric_14_1 SELEX + 24150436 24150449 2.0E-06 ATGACAGCTGTGAT 14 MEIS2_MEIS_DBD_dimeric_14_1 SELEX - 24150436 24150449 2.0E-06 ATCACAGCTGTCAT 14 TEAD4_TEA_DBD_monomeric_10_1 SELEX + 24148723 24148732 8.0E-06 AACATTCCAC 10 HSFY2_HSF_DBD_dimeric_9_1 SELEX - 24149153 24149161 8.0E-06 ATTCGAACG 9 TP53_MA0106.1 JASPAR - 24147998 24148017 1.0E-06 CCAAACATGTTCAAGCTTCT 20 TP53_MA0106.1 JASPAR + 24148004 24148023 2.0E-06 TTGAACATGTTTGGAATAGT 20 POU3F3_POU_DBD_dimeric_12_1 SELEX + 24150740 24150751 7.0E-06 ATTCATATGAAA 12 Tcfap2a_TFAP_DBD_dimeric_11_1 SELEX + 24149548 24149558 1.0E-05 CGCCCCAGGCT 11 TGIF1_MEIS_DBD_dimeric_12_1 SELEX + 24150437 24150448 1.0E-06 TGACAGCTGTGA 12 TGIF1_MEIS_DBD_dimeric_12_1 SELEX - 24150437 24150448 2.0E-06 TCACAGCTGTCA 12 IRF2_MA0051.1 JASPAR - 24149045 24149062 9.0E-06 GAGAAGTGAAAGTTTTCT 18 Zfx_MA0146.1 JASPAR - 24149571 24149584 1.0E-06 CGGGCCTGGGCCTG 14 V_AP2ALPHA_Q6_M01857 TRANSFAC + 24150641 24150651 6.0E-06 TGCCCCCGGCC 11 V_HNF3B_01_M00131 TRANSFAC - 24147523 24147537 0.0E+00 TGAAATATTTGTTTT 15 V_MEIS1_02_M01419 TRANSFAC - 24150433 24150448 6.0E-06 TCACAGCTGTCATTCT 16 V_PREP1_01_M01459 TRANSFAC - 24150433 24150448 6.0E-06 TCACAGCTGTCATTCT 16 V_BCL6_Q3_01_M02085 TRANSFAC + 24149021 24149030 3.0E-06 CTTTCAAGAA 10 V_SOX14_05_M02902 TRANSFAC + 24149213 24149227 3.0E-06 TTCACACAAAAGAGC 15 V_ZFX_01_M01593 TRANSFAC + 24149568 24149583 9.0E-06 CCCCAGGCCCAGGCCC 16 V_HMGIY_Q3_M01010 TRANSFAC - 24150452 24150466 1.0E-06 AGATGAATTTTTTTT 15 V_EVI1_04_M00081 TRANSFAC + 24150446 24150460 4.0E-06 TGATAAAAAAAAAAT 15 V_FOXD3_01_M00130 TRANSFAC - 24147524 24147535 0.0E+00 AAATATTTGTTT 12 V_FOXD3_01_M00130 TRANSFAC - 24150450 24150461 9.0E-06 AATTTTTTTTTT 12 V_FOXD3_01_M00130 TRANSFAC - 24150451 24150462 9.0E-06 GAATTTTTTTTT 12 V_NKX29_01_M01352 TRANSFAC + 24148043 24148059 1.0E-06 TTCAAAGTACTTATTCT 17 V_BCL6_01_M01183 TRANSFAC - 24147528 24147543 6.0E-06 TTACTTTGAAATATTT 16 V_BCL6_01_M01183 TRANSFAC - 24150715 24150730 1.0E-06 TAATTTTTTTTTCTTT 16 V_PROP1_01_M01294 TRANSFAC - 24150720 24150730 5.0E-06 TAATTTTTTTT 11 V_SP1_Q6_01_M00931 TRANSFAC - 24150081 24150090 4.0E-06 GGGGCGGGGC 10 V_IRF_Q6_01_M00972 TRANSFAC - 24149051 24149061 3.0E-06 AGAAGTGAAAG 11 V_ZFP740_03_M02834 TRANSFAC - 24150500 24150515 6.0E-06 TTCCCCCCCCCCTTCT 16 V_ZFP740_03_M02834 TRANSFAC - 24150501 24150516 0.0E+00 TTTCCCCCCCCCCTTC 16 V_IRF2_Q6_M01882 TRANSFAC - 24149048 24149063 5.0E-06 GGAGAAGTGAAAGTTT 16 V_CEBP_01_M00159 TRANSFAC + 24148011 24148023 7.0E-06 TGTTTGGAATAGT 13 V_FOXO3A_Q1_M01137 TRANSFAC + 24147521 24147532 7.0E-06 GAAAAACAAATA 12 V_AP2_Q6_01_M00915 TRANSFAC + 24149564 24149576 2.0E-06 CCGGCCCCAGGCC 13 V_HNF3_Q6_01_M01012 TRANSFAC - 24147520 24147537 6.0E-06 TGAAATATTTGTTTTTCA 18 V_SP1_03_M02281 TRANSFAC + 24150082 24150091 7.0E-06 CCCCGCCCCC 10 V_HFH4_01_M00742 TRANSFAC - 24147523 24147535 1.0E-06 AAATATTTGTTTT 13 V_PRX2_Q2_M02115 TRANSFAC + 24147535 24147543 7.0E-06 TCAAAGTAA 9 V_PU1_Q4_M01172 TRANSFAC + 24149049 24149067 9.0E-06 AACTTTCACTTCTCCAACC 19 V_TCFAP2E_04_M02926 TRANSFAC + 24150446 24150459 1.0E-06 TGATAAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 24150713 24150726 9.0E-06 CCAAAGAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 24150714 24150727 2.0E-06 CAAAGAAAAAAAAA 14 V_TCFAP2E_04_M02926 TRANSFAC + 24150715 24150728 4.0E-06 AAAGAAAAAAAAAT 14 V_REX1_01_M01695 TRANSFAC - 24149528 24149537 4.0E-06 GCAGCCATTT 10 V_ELF4_04_M02850 TRANSFAC - 24148865 24148881 6.0E-06 ACTTTAAAAACAAAATC 17 V_ELF4_04_M02850 TRANSFAC + 24150444 24150460 4.0E-06 TGTGATAAAAAAAAAAT 17 V_ELF4_04_M02850 TRANSFAC + 24150445 24150461 1.0E-06 GTGATAAAAAAAAAATT 17 V_ELF4_04_M02850 TRANSFAC + 24150446 24150462 0.0E+00 TGATAAAAAAAAAATTC 17 V_ELF4_04_M02850 TRANSFAC + 24150447 24150463 1.0E-06 GATAAAAAAAAAATTCA 17 V_SOX13_03_M02797 TRANSFAC + 24147520 24147535 5.0E-06 TGAAAAACAAATATTT 16 V_SOX7_03_M02807 TRANSFAC + 24147518 24147539 4.0E-06 ACTGAAAAACAAATATTTCAAA 22 V_MTERF_01_M01245 TRANSFAC - 24148957 24148970 0.0E+00 TGGTTCAAGTTGGT 14 V_TCF3_04_M02816 TRANSFAC + 24147529 24147545 2.0E-06 AATATTTCAAAGTAAAT 17 V_MEIS2_01_M01488 TRANSFAC - 24150433 24150448 4.0E-06 TCACAGCTGTCATTCT 16 V_POU3F2_01_M00463 TRANSFAC - 24150451 24150464 2.0E-06 ATGAATTTTTTTTT 14 V_TGIF_02_M01346 TRANSFAC + 24150432 24150448 0.0E+00 GAGAATGACAGCTGTGA 17 V_SPI1_03_M02078 TRANSFAC - 24148948 24148957 4.0E-06 TGAGGAAGTG 10 V_ZFP105_03_M02827 TRANSFAC + 24150447 24150461 2.0E-06 GATAAAAAAAAAATT 15 V_ZFP105_03_M02827 TRANSFAC + 24150448 24150462 8.0E-06 ATAAAAAAAAAATTC 15 V_ZFP105_03_M02827 TRANSFAC + 24150449 24150463 5.0E-06 TAAAAAAAAAATTCA 15 V_ZFP105_03_M02827 TRANSFAC + 24150716 24150730 3.0E-06 AAGAAAAAAAAATTA 15 V_ZFP105_03_M02827 TRANSFAC + 24150717 24150731 3.0E-06 AGAAAAAAAAATTAA 15 V_ARID5A_03_M02736 TRANSFAC + 24147527 24147540 6.0E-06 CAAATATTTCAAAG 14 V_SOX1_04_M02906 TRANSFAC - 24148658 24148672 8.0E-06 ACATTTTTGTTATGG 15 V_MRF2_01_M00454 TRANSFAC + 24150661 24150674 1.0E-05 ATTAAGAATACAAA 14 V_IRF2_01_M00063 TRANSFAC - 24149050 24149062 2.0E-06 GAGAAGTGAAAGT 13 V_P53_03_M01651 TRANSFAC + 24148006 24148025 9.0E-06 GAACATGTTTGGAATAGTTT 20 V_P53_03_M01651 TRANSFAC - 24148006 24148025 9.0E-06 AAACTATTCCAAACATGTTC 20 V_HNF3_Q6_M00791 TRANSFAC + 24147522 24147534 0.0E+00 AAAAACAAATATT 13 V_HNF3ALPHA_Q6_M00724 TRANSFAC - 24147522 24147532 0.0E+00 TATTTGTTTTT 11 V_EGR1_Q6_M01873 TRANSFAC + 24149840 24149849 4.0E-06 GCGGGGGCGG 10 V_SOX_Q6_M01014 TRANSFAC - 24150539 24150551 6.0E-06 CGCTTTGTTTAAA 13 V_HNF1_Q6_01_M01011 TRANSFAC + 24150716 24150736 5.0E-06 AAGAAAAAAAAATTAAGCCAC 21 V_TATA_C_M00216 TRANSFAC - 24148872 24148881 6.0E-06 ACTTTAAAAA 10 V_REX1_03_M01744 TRANSFAC + 24149527 24149538 4.0E-06 GAAATGGCTGCT 12 V_REX1_03_M01744 TRANSFAC - 24149912 24149923 7.0E-06 GAAATGGCGGCT 12 V_SP1SP3_Q4_M01219 TRANSFAC - 24150501 24150511 7.0E-06 CCCCCCCCTTC 11 V_SP1SP3_Q4_M01219 TRANSFAC + 24150633 24150643 8.0E-06 CCGCCCCCTGC 11 V_SOX12_04_M02900 TRANSFAC + 24150684 24150699 2.0E-06 CCACAGATAAAGCATT 16 V_NFKAPPAB50_01_M00051 TRANSFAC - 24150366 24150375 2.0E-06 GGGGATTCCC 10 V_ERBETA_Q5_M01875 TRANSFAC - 24149227 24149241 6.0E-06 TTCAAGCTGGCCCGG 15 V_TCF7_03_M02817 TRANSFAC + 24147529 24147545 4.0E-06 AATATTTCAAAGTAAAT 17 V_NKX3A_01_M00451 TRANSFAC - 24148047 24148058 3.0E-06 GAATAAGTACTT 12 V_TGIF1_01_M03111 TRANSFAC + 24150432 24150448 0.0E+00 GAGAATGACAGCTGTGA 17 V_OCT4_02_M01124 TRANSFAC + 24150740 24150754 9.0E-06 ATTCATATGAAAAGC 15 V_NKX23_01_M01457 TRANSFAC + 24148043 24148058 2.0E-06 TTCAAAGTACTTATTC 16 V_FOXO1_Q5_M01216 TRANSFAC + 24147522 24147530 1.0E-06 AAAAACAAA 9 V_SP4_Q5_M01273 TRANSFAC + 24150081 24150091 1.0E-06 GCCCCGCCCCC 11 V_MYOD_Q6_02_M02100 TRANSFAC - 24150437 24150445 4.0E-06 CAGCTGTCA 9 V_MTF1_06_M02882 TRANSFAC + 24150446 24150459 1.0E-06 TGATAAAAAAAAAA 14 V_T3R_01_M00239 TRANSFAC - 24148754 24148769 8.0E-06 CTTTCAGGTCACAGAA 16 V_MAZR_01_M00491 TRANSFAC + 24150504 24150516 1.0E-06 GGGGGGGGGGAAA 13 V_GABPBETA_Q3_M01876 TRANSFAC + 24149800 24149810 1.0E-05 AGAGGAAGGGA 11 V_PKNOX2_01_M01411 TRANSFAC - 24150433 24150448 5.0E-06 TCACAGCTGTCATTCT 16 V_NKX3A_02_M01383 TRANSFAC - 24148042 24148058 0.0E+00 GAATAAGTACTTTGAAG 17 V_NKX3A_02_M01383 TRANSFAC + 24148043 24148059 2.0E-06 TTCAAAGTACTTATTCT 17 V_TEF1_Q6_03_M01817 TRANSFAC - 24148724 24148732 6.0E-06 GTGGAATGT 9 V_NKX22_01_M00485 TRANSFAC - 24148047 24148056 3.0E-06 ATAAGTACTT 10 V_FOXO3_01_M00477 TRANSFAC + 24148866 24148879 8.0E-06 ATTTTGTTTTTAAA 14 V_SPIC_02_M02077 TRANSFAC - 24148948 24148957 5.0E-06 TGAGGAAGTG 10 V_P53_05_M01655 TRANSFAC + 24148006 24148025 2.0E-06 GAACATGTTTGGAATAGTTT 20 V_PBX1_03_M01017 TRANSFAC - 24148827 24148838 9.0E-06 AGATCAAACATG 12 V_PLZF_02_M01075 TRANSFAC + 24150437 24150465 9.0E-06 TGACAGCTGTGATAAAAAAAAAATTCATC 29 V_PLZF_02_M01075 TRANSFAC - 24150692 24150720 1.0E-05 TTCTTTGGAAGTTAAATTGCAAATGCTTT 29 V_EGR1_06_M02744 TRANSFAC - 24149837 24149850 2.0E-06 ACCGCCCCCGCTTC 14 V_IRF1_Q6_01_M01881 TRANSFAC + 24149049 24149062 2.0E-06 AACTTTCACTTCTC 14 V_P63_01_M01656 TRANSFAC - 24148006 24148025 9.0E-06 AAACTATTCCAAACATGTTC 20 V_NFKAPPAB_01_M00054 TRANSFAC - 24150366 24150375 9.0E-06 GGGGATTCCC 10 V_ZFP281_04_M02831 TRANSFAC - 24150501 24150515 0.0E+00 TTCCCCCCCCCCTTC 15 V_SRF_06_M02916 TRANSFAC + 24147519 24147535 8.0E-06 CTGAAAAACAAATATTT 17 V_SRF_06_M02916 TRANSFAC - 24148864 24148880 0.0E+00 CTTTAAAAACAAAATCA 17 V_SRF_06_M02916 TRANSFAC + 24150444 24150460 6.0E-06 TGTGATAAAAAAAAAAT 17 V_SRF_06_M02916 TRANSFAC + 24150445 24150461 0.0E+00 GTGATAAAAAAAAAATT 17 V_SRF_06_M02916 TRANSFAC + 24150446 24150462 0.0E+00 TGATAAAAAAAAAATTC 17 V_SRF_06_M02916 TRANSFAC + 24150447 24150463 0.0E+00 GATAAAAAAAAAATTCA 17 V_SRF_06_M02916 TRANSFAC + 24150448 24150464 3.0E-06 ATAAAAAAAAAATTCAT 17 V_SRF_06_M02916 TRANSFAC + 24150713 24150729 1.0E-06 CCAAAGAAAAAAAAATT 17 V_SRF_06_M02916 TRANSFAC + 24150714 24150730 0.0E+00 CAAAGAAAAAAAAATTA 17 V_SRF_06_M02916 TRANSFAC + 24150715 24150731 2.0E-06 AAAGAAAAAAAAATTAA 17 V_HFH3_01_M00289 TRANSFAC - 24147523 24147535 3.0E-06 AAATATTTGTTTT 13 V_FOXJ2_01_M00422 TRANSFAC + 24147520 24147537 0.0E+00 TGAAAAACAAATATTTCA 18 V_COREBINDINGFACTOR_Q6_M00722 TRANSFAC - 24148684 24148691 1.0E-05 TGTGGTTT 8 V_SOX2_Q6_M01272 TRANSFAC - 24148658 24148673 1.0E-06 TACATTTTTGTTATGG 16 V_PAX4_02_M00377 TRANSFAC + 24150722 24150732 2.0E-06 AAAAAATTAAG 11 V_SOX12_03_M02796 TRANSFAC + 24148866 24148879 1.0E-05 ATTTTGTTTTTAAA 14 V_PIT1_Q6_M00802 TRANSFAC - 24150653 24150670 2.0E-06 TATTCTTAATTCTTCAGC 18 V_SP1_Q2_01_M00933 TRANSFAC + 24150082 24150091 4.0E-06 CCCCGCCCCC 10 V_FOXO4_01_M00472 TRANSFAC + 24147522 24147532 5.0E-06 AAAAACAAATA 11 V_TCFAP2E_03_M02822 TRANSFAC - 24149546 24149560 7.0E-06 AGAGCCTGGGGCGAC 15 V_SP1_Q4_01_M00932 TRANSFAC - 24150080 24150092 9.0E-06 CGGGGGCGGGGCA 13 V_TAACC_B_M00331 TRANSFAC + 24150718 24150740 7.0E-06 GAAAAAAAAATTAAGCCACACAA 23 V_TCF3_05_M02920 TRANSFAC + 24147495 24147509 3.0E-06 AGCCGAACATAAATC 15 V_TCF3_05_M02920 TRANSFAC + 24150445 24150459 9.0E-06 GTGATAAAAAAAAAA 15 V_TCF3_05_M02920 TRANSFAC + 24150715 24150729 1.0E-06 AAAGAAAAAAAAATT 15 V_PAX4_04_M00380 TRANSFAC + 24150719 24150748 2.0E-06 AAAAAAAAATTAAGCCACACAATTCATATG 30 V_SPIB_03_M02076 TRANSFAC - 24148948 24148957 5.0E-06 TGAGGAAGTG 10 V_NANOG_02_M01247 TRANSFAC + 24150425 24150444 8.0E-06 TAGAAATGAGAATGACAGCT 20 V_T3RALPHA_Q6_M01724 TRANSFAC - 24148758 24148768 6.0E-06 TTTCAGGTCAC 11 V_OCT4_01_M01125 TRANSFAC + 24150739 24150753 8.0E-06 AATTCATATGAAAAG 15

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.